Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Pesquisa Agropecuária Tropical (Online) |
Texto Completo: | https://revistas.ufg.br/pat/article/view/72568 |
Resumo: | Durian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity. |
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Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, IndonesiaRelação filogenética de cultivares superiores de durian (Durio zibethinus) nativas de Kalimantan do Sul, IndonésiaDurian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity.O durian, especialmente Durio zibethinus, é uma commodity agrícola com alto valor econômico, tanto no mercado local quanto global. Objetivou-se determinar a diversidade genética, relações e correlação de cultivares superiores de D. zibethinus (‘Likol’, ‘Sahang’ e ‘Si Japang’) nativas de Kalimantan do Sul, Indonésia, usando o marcador rbcL, e compará-las com outras 48 cultivares do banco de dados GenBank. Todos os marcadores durian rbcL foram analisados usando o software MEGA-X e filogeneticamente reconstruídos utilizando-se duas abordagens: máxima verossimilhança (ML) e agrupamentos vizinhos (NJ). A árvore filogenética do durian foi avaliada por análise de bootstrap, e suas relações pela correlação de Pearson e análise de componentes principais. O durian apresentou baixa diversidade genética (π% = 0,056); no entanto, relações únicas foram reveladas. Seguindo a região rbcL, esse germoplasma foi agrupado em cinco clados, utilizando-se ML e NJ. Nesse caso, ‘Si Japang’ e ‘Sahang’ mostraram-se intimamente relacionadas com ‘T16’ da Malásia, enquanto ‘Likol’ relacionou-se com ‘Monthong’ da Tailândia. No entanto, com base na análise de divergência genética, ‘Sahang’ apresentou o relacionamento mais distante com três durians da Tailândia (‘Metnai Kanyao’, ‘Chok Loi’ e ‘Malet Ar-Ri’). PALAVRAS-CHAVE: Programa de melhoramento, Ilha de Bornéu, diversidade genética, commodity hortícola.Escola de Agronomia - Universidade Federal de Goiás2022-09-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAvaliado por paresapplication/pdfhttps://revistas.ufg.br/pat/article/view/72568Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 52 (2022); e72568Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 52 (2022); e72568Pesquisa Agropecuária Tropical; v. 52 (2022); e725681983-4063reponame:Pesquisa Agropecuária Tropical (Online)instname:Universidade Federal de Goiás (UFG)instacron:UFGenghttps://revistas.ufg.br/pat/article/view/72568/38712Copyright (c) 2022 Pesquisa Agropecuária Tropicalinfo:eu-repo/semantics/openAccessMursyidin, Dindin Hidayatul2022-09-09T13:28:28Zoai:ojs.revistas.ufg.br:article/72568Revistahttps://revistas.ufg.br/patPUBhttps://revistas.ufg.br/pat/oaiaseleguini.pat@gmail.com||mgoes@agro.ufg.br1983-40631517-6398opendoar:2024-05-21T19:56:36.239116Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG)true |
dc.title.none.fl_str_mv |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia Relação filogenética de cultivares superiores de durian (Durio zibethinus) nativas de Kalimantan do Sul, Indonésia |
title |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
spellingShingle |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia Mursyidin, Dindin Hidayatul |
title_short |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
title_full |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
title_fullStr |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
title_full_unstemmed |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
title_sort |
Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia |
author |
Mursyidin, Dindin Hidayatul |
author_facet |
Mursyidin, Dindin Hidayatul |
author_role |
author |
dc.contributor.author.fl_str_mv |
Mursyidin, Dindin Hidayatul |
description |
Durian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-09-09 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Avaliado por pares |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://revistas.ufg.br/pat/article/view/72568 |
url |
https://revistas.ufg.br/pat/article/view/72568 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://revistas.ufg.br/pat/article/view/72568/38712 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2022 Pesquisa Agropecuária Tropical info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2022 Pesquisa Agropecuária Tropical |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Escola de Agronomia - Universidade Federal de Goiás |
publisher.none.fl_str_mv |
Escola de Agronomia - Universidade Federal de Goiás |
dc.source.none.fl_str_mv |
Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 52 (2022); e72568 Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 52 (2022); e72568 Pesquisa Agropecuária Tropical; v. 52 (2022); e72568 1983-4063 reponame:Pesquisa Agropecuária Tropical (Online) instname:Universidade Federal de Goiás (UFG) instacron:UFG |
instname_str |
Universidade Federal de Goiás (UFG) |
instacron_str |
UFG |
institution |
UFG |
reponame_str |
Pesquisa Agropecuária Tropical (Online) |
collection |
Pesquisa Agropecuária Tropical (Online) |
repository.name.fl_str_mv |
Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG) |
repository.mail.fl_str_mv |
aseleguini.pat@gmail.com||mgoes@agro.ufg.br |
_version_ |
1799874821479202816 |