Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia

Detalhes bibliográficos
Autor(a) principal: Mursyidin, Dindin Hidayatul
Data de Publicação: 2022
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Pesquisa Agropecuária Tropical (Online)
Texto Completo: https://revistas.ufg.br/pat/article/view/72568
Resumo: Durian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity.
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spelling Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, IndonesiaRelação filogenética de cultivares superiores de durian (Durio zibethinus) nativas de Kalimantan do Sul, IndonésiaDurian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity.O durian, especialmente Durio zibethinus, é uma commodity agrícola com alto valor econômico, tanto no mercado local quanto global. Objetivou-se determinar a diversidade genética, relações e correlação de cultivares superiores de D. zibethinus (‘Likol’, ‘Sahang’ e ‘Si Japang’) nativas de Kalimantan do Sul, Indonésia, usando o marcador rbcL, e compará-las com outras 48 cultivares do banco de dados GenBank. Todos os marcadores durian rbcL foram analisados ​​usando o software MEGA-X e filogeneticamente reconstruídos utilizando-se duas abordagens: máxima verossimilhança (ML) e agrupamentos vizinhos (NJ). A árvore filogenética do durian foi avaliada por análise de bootstrap, e suas relações pela correlação de Pearson e análise de componentes principais. O durian apresentou baixa diversidade genética (π% = 0,056); no entanto, relações únicas foram reveladas. Seguindo a região rbcL, esse germoplasma foi agrupado em cinco clados, utilizando-se ML e NJ. Nesse caso, ‘Si Japang’ e ‘Sahang’ mostraram-se intimamente relacionadas com ‘T16’ da Malásia, enquanto ‘Likol’ relacionou-se com ‘Monthong’ da Tailândia. No entanto, com base na análise de divergência genética, ‘Sahang’ apresentou o relacionamento mais distante com três durians da Tailândia (‘Metnai Kanyao’, ‘Chok Loi’ e ‘Malet Ar-Ri’). PALAVRAS-CHAVE: Programa de melhoramento, Ilha de Bornéu, diversidade genética, commodity hortícola.Escola de Agronomia - Universidade Federal de Goiás2022-09-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAvaliado por paresapplication/pdfhttps://revistas.ufg.br/pat/article/view/72568Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 52 (2022); e72568Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 52 (2022); e72568Pesquisa Agropecuária Tropical; v. 52 (2022); e725681983-4063reponame:Pesquisa Agropecuária Tropical (Online)instname:Universidade Federal de Goiás (UFG)instacron:UFGenghttps://revistas.ufg.br/pat/article/view/72568/38712Copyright (c) 2022 Pesquisa Agropecuária Tropicalinfo:eu-repo/semantics/openAccessMursyidin, Dindin Hidayatul2022-09-09T13:28:28Zoai:ojs.revistas.ufg.br:article/72568Revistahttps://revistas.ufg.br/patPUBhttps://revistas.ufg.br/pat/oaiaseleguini.pat@gmail.com||mgoes@agro.ufg.br1983-40631517-6398opendoar:2024-05-21T19:56:36.239116Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG)true
dc.title.none.fl_str_mv Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
Relação filogenética de cultivares superiores de durian (Durio zibethinus) nativas de Kalimantan do Sul, Indonésia
title Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
spellingShingle Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
Mursyidin, Dindin Hidayatul
title_short Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
title_full Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
title_fullStr Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
title_full_unstemmed Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
title_sort Phylogenetic relationship of superior durian (Durio zibethinus) cultivars native to South Kalimantan, Indonesia
author Mursyidin, Dindin Hidayatul
author_facet Mursyidin, Dindin Hidayatul
author_role author
dc.contributor.author.fl_str_mv Mursyidin, Dindin Hidayatul
description Durian, especially Durio zibethinus, is an agricultural commodity with high economic value, both in local and global markets. This study aimed to determine the genetic diversity, relationships and correlation of superior cultivars of D. zibethinus (‘Likol’, ‘Sahang’ and ‘Si Japang’) native to South Kalimantan, Indonesia, using the rbcL marker, and compare them with other 48 cultivars from the GenBank database. All durian rbcL markers were analyzed using the MEGA-X software and phylogenetically reconstructed using two approaches: maximum likelihood (ML) and neighbor-joining (NJ). The durian phylogenetic tree was assessed by bootstrap analysis, and their relationships by Pearson’s correlation and principal component analysis. The durian showed a low genetic diversity (π% = 0.056); however, unique relationships were revealed. Following the rbcL region, this germplasm was grouped into five clades using ML and NJ. In this case, ‘Si Japang’ and ‘Sahang’ showed to be closely related to ‘T16’ from Malaysia, whereas ‘Likol’ was related to ‘Monthong’ from Thailand. However, based on the genetic divergence analysis, ‘Sahang’ had the farthest relationship with three durians from Thailand (‘Metnai Kanyao’, ‘Chok Loi’ and ‘Malet Ar-Ri’). KEYWORDS: Breeding program, Borneo Island, genetic diversity, horticulture commodity.
publishDate 2022
dc.date.none.fl_str_mv 2022-09-09
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Avaliado por pares
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://revistas.ufg.br/pat/article/view/72568
url https://revistas.ufg.br/pat/article/view/72568
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistas.ufg.br/pat/article/view/72568/38712
dc.rights.driver.fl_str_mv Copyright (c) 2022 Pesquisa Agropecuária Tropical
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2022 Pesquisa Agropecuária Tropical
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Escola de Agronomia - Universidade Federal de Goiás
publisher.none.fl_str_mv Escola de Agronomia - Universidade Federal de Goiás
dc.source.none.fl_str_mv Pesquisa Agropecuária Tropical [Agricultural Research in the Tropics]; Vol. 52 (2022); e72568
Pesquisa Agropecuária Tropical (Agricultural Research in the Tropics); Vol. 52 (2022); e72568
Pesquisa Agropecuária Tropical; v. 52 (2022); e72568
1983-4063
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instname:Universidade Federal de Goiás (UFG)
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instname_str Universidade Federal de Goiás (UFG)
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reponame_str Pesquisa Agropecuária Tropical (Online)
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repository.name.fl_str_mv Pesquisa Agropecuária Tropical (Online) - Universidade Federal de Goiás (UFG)
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