Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.

Detalhes bibliográficos
Autor(a) principal: Rawat, Akhilesh
Data de Publicação: 2024
Outros Autores: Kumar, Rajeev
Tipo de documento: Artigo
Idioma: eng
Título da fonte: INFOCOMP: Jornal de Ciência da Computação
Texto Completo: https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927
Resumo: The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets  
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spelling Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets  Editora da UFLA2024-01-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927INFOCOMP Journal of Computer Science; Vol. 22 No. 2 (2023): December1982-33631807-4545reponame:INFOCOMP: Jornal de Ciência da Computaçãoinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAenghttps://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927/601Copyright (c) 2024 Akhilesh Rawat, Rajeevinfo:eu-repo/semantics/openAccessRawat, AkhileshKumar, Rajeev2024-01-07T17:18:01Zoai:infocomp.dcc.ufla.br:article/2927Revistahttps://infocomp.dcc.ufla.br/index.php/infocompPUBhttps://infocomp.dcc.ufla.br/index.php/infocomp/oaiinfocomp@dcc.ufla.br||apfreire@dcc.ufla.br1982-33631807-4545opendoar:2024-05-21T19:54:48.880903INFOCOMP: Jornal de Ciência da Computação - Universidade Federal de Lavras (UFLA)true
dc.title.none.fl_str_mv Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
title Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
spellingShingle Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
Rawat, Akhilesh
title_short Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
title_full Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
title_fullStr Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
title_full_unstemmed Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
title_sort Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
author Rawat, Akhilesh
author_facet Rawat, Akhilesh
Kumar, Rajeev
author_role author
author2 Kumar, Rajeev
author2_role author
dc.contributor.author.fl_str_mv Rawat, Akhilesh
Kumar, Rajeev
description The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets  
publishDate 2024
dc.date.none.fl_str_mv 2024-01-07
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927
url https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927/601
dc.rights.driver.fl_str_mv Copyright (c) 2024 Akhilesh Rawat, Rajeev
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2024 Akhilesh Rawat, Rajeev
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Editora da UFLA
publisher.none.fl_str_mv Editora da UFLA
dc.source.none.fl_str_mv INFOCOMP Journal of Computer Science; Vol. 22 No. 2 (2023): December
1982-3363
1807-4545
reponame:INFOCOMP: Jornal de Ciência da Computação
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str INFOCOMP: Jornal de Ciência da Computação
collection INFOCOMP: Jornal de Ciência da Computação
repository.name.fl_str_mv INFOCOMP: Jornal de Ciência da Computação - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv infocomp@dcc.ufla.br||apfreire@dcc.ufla.br
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