Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.
Autor(a) principal: | |
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Data de Publicação: | 2024 |
Outros Autores: | |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | INFOCOMP: Jornal de Ciência da Computação |
Texto Completo: | https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927 |
Resumo: | The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets |
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INFOCOMP: Jornal de Ciência da Computação |
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Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium.The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets Editora da UFLA2024-01-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927INFOCOMP Journal of Computer Science; Vol. 22 No. 2 (2023): December1982-33631807-4545reponame:INFOCOMP: Jornal de Ciência da Computaçãoinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAenghttps://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927/601Copyright (c) 2024 Akhilesh Rawat, Rajeevinfo:eu-repo/semantics/openAccessRawat, AkhileshKumar, Rajeev2024-01-07T17:18:01Zoai:infocomp.dcc.ufla.br:article/2927Revistahttps://infocomp.dcc.ufla.br/index.php/infocompPUBhttps://infocomp.dcc.ufla.br/index.php/infocomp/oaiinfocomp@dcc.ufla.br||apfreire@dcc.ufla.br1982-33631807-4545opendoar:2024-05-21T19:54:48.880903INFOCOMP: Jornal de Ciência da Computação - Universidade Federal de Lavras (UFLA)true |
dc.title.none.fl_str_mv |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
title |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
spellingShingle |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. Rawat, Akhilesh |
title_short |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
title_full |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
title_fullStr |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
title_full_unstemmed |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
title_sort |
Deep-CodecG*: A Generalized Deep Autoencoder for Robust Segmentation of Left Atrium in Cardiac MRIs: Deep-CodecG* for Robust Segmentation of Left Atrium. |
author |
Rawat, Akhilesh |
author_facet |
Rawat, Akhilesh Kumar, Rajeev |
author_role |
author |
author2 |
Kumar, Rajeev |
author2_role |
author |
dc.contributor.author.fl_str_mv |
Rawat, Akhilesh Kumar, Rajeev |
description |
The left atrium receives oxygenated blood from pulmonary veins and is a vital organ concerningcongestive heart failure. Several deep learning-based architectures and learning methodologies havebeen proposed for left atrium semantic segmentation. These studies have shown good performance inlearning known datasets. However, generalization remains challenging. In this work, we propose a deepauto-encoder architecture with generalization ability which we call Deep-CodecG*. The proposed modelutilized a CNN-based auto-encoder in which the standard convolution is replaced with a two-convolutionlayer block. This proposed model is generalization enabled with a proper parameterization for (near-)optimal performance. The proposed Deep-CodecG* improves performance on unseen test data, a dicescore of 0.95, which is 6.3% higher than that of a standard auto-encoder. The proposed model gave highersensitivity, specificity, Jaccard, and structural similarity values and lower Hausdorff distance indicatingimprovement over an autoencoder with similar two-convolution layer blocks. Though these quantitativeimprovements seem marginal, they are shown to have a significant impact. The segmented left atriumimages match the ground-truth data very closely. Thus, the proposed Deep-CodecG* architecture for leftatrium segmentation exhibits well-generalized and robust performance over various image datasets |
publishDate |
2024 |
dc.date.none.fl_str_mv |
2024-01-07 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927 |
url |
https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://infocomp.dcc.ufla.br/index.php/infocomp/article/view/2927/601 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2024 Akhilesh Rawat, Rajeev info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2024 Akhilesh Rawat, Rajeev |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Editora da UFLA |
publisher.none.fl_str_mv |
Editora da UFLA |
dc.source.none.fl_str_mv |
INFOCOMP Journal of Computer Science; Vol. 22 No. 2 (2023): December 1982-3363 1807-4545 reponame:INFOCOMP: Jornal de Ciência da Computação instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
instname_str |
Universidade Federal de Lavras (UFLA) |
instacron_str |
UFLA |
institution |
UFLA |
reponame_str |
INFOCOMP: Jornal de Ciência da Computação |
collection |
INFOCOMP: Jornal de Ciência da Computação |
repository.name.fl_str_mv |
INFOCOMP: Jornal de Ciência da Computação - Universidade Federal de Lavras (UFLA) |
repository.mail.fl_str_mv |
infocomp@dcc.ufla.br||apfreire@dcc.ufla.br |
_version_ |
1799874742711222272 |