Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador

Detalhes bibliográficos
Autor(a) principal: Souza, Felipe Amorim Caetano de
Data de Publicação: 2021
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/46182
Resumo: The Mangalarga Marchador (MM) breed originating in the southern region in the state of Minas Gerais is the largest breed of horses raised in Brazil. The objectives of this study were to estimate the effects of the environment and the genetic parameters of linear characteristics and score scores (gait, morphology and total) obtained at the time of the definitive registration of MM animals, as well as to identify the existence of possible lines in this breed, taking into account the allele frequency observed from information obtained by genotyping in microsatellite markers using discriminant analysis of principal components. To obtain the genetic parameters, data from 167,764 animals from 14,252 farms between 1967 and 2016 were evaluated. The characteristics evaluated were heights: withers (HW) and croup (HC); lengths: head (LH), neck (LN), shoulder (LS), back-loin (LBL), croup (LC), body (LB); widths: head (WH) and croup (WC); perimeters: thoracic (PT) and cannon (PC); scores: gait (SG), morphology (Morf) and total (Stotal). The components of (co) variance, heritability (h²), genetic and phenotypic correlations between the linear characteristics were obtained using the restricted maximum likelihood method using the AIREMLF90 program. The characteristics obtained by scoring scores were assessed by Bayesian analysis, using the THRGIBBSF90 program and the POSTGIBBSF90 application. For the identification of the lines, data from 60,795 MM horses (24,037 males and 36,758 females) were used, distributed throughout the national territory and in all states of the federation, genotyped in a paternity test by DNA examination for 13 microsatellite loci between years 2005 to 2016. For verification of the possible existence of lines the Discriminant Analysis of the Principal Components (DAPC) was carried out, using the program R. The Bayesian Information Criterion - BIC was used to identify the number optimal number of genetic (K) groups. To choose the ideal number of main components (PCs) to be retained in the analysis, the α-score was calculated using the adegenet package of the program R. The h2 obtained were: HW (0.46); HC (0.46); LH (0.20), LN (0.21), LBL (0.27), LC (0.23), LS (0.21); LB (0.35); WH (0.24); WC (0.25); PT (0.22); PC (0.18); SG (0.21), Morf (0.22) and Stotal (0.26). The genetic correlations ranged from zero, between CP and And, to 0.96 between AC and AG. The phenotypic correlations ranged from zero, between AG and Morf, to 0.85 between And and Morf. The ideal number of groups was 300 and the main components retained in the DAPC were 35, chosen from the lowest BIC value (300) and highest α-score value (35 and 0.8), respectively. Was not observed the existence of dispersion of values along the DAPC graph, demonstrating the non-formation of groups or any genetic distance between animals within the MM breed. The effects of sex, farm, year of birth and registration must be included in the analysis model to estimate genetic parameters for the morphofunctional characteristics of the MM breed. Withers and croup height characteristics must respond to selection, resulting in genetic progress in MM animals. The selection for withers height should result in correlated changes in the height of the croup and in the body length, as well as the selection for total score may lead to the improvement of the genetic merit of the morphology of animals of the MM breed. The existence of lines in the MM breed was not genetically identified, considering data from microsatellites of animals evaluated from the year 2005.
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spelling Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga MarchadorGenetic parameters of morphofunctional characteristics and identification of lines in the mangalarga marchador breedEquus caballusMangalarga MarchadorEstrutura da populaçãoHerdabilidadePopulation structureHeritabilityZootecniaThe Mangalarga Marchador (MM) breed originating in the southern region in the state of Minas Gerais is the largest breed of horses raised in Brazil. The objectives of this study were to estimate the effects of the environment and the genetic parameters of linear characteristics and score scores (gait, morphology and total) obtained at the time of the definitive registration of MM animals, as well as to identify the existence of possible lines in this breed, taking into account the allele frequency observed from information obtained by genotyping in microsatellite markers using discriminant analysis of principal components. To obtain the genetic parameters, data from 167,764 animals from 14,252 farms between 1967 and 2016 were evaluated. The characteristics evaluated were heights: withers (HW) and croup (HC); lengths: head (LH), neck (LN), shoulder (LS), back-loin (LBL), croup (LC), body (LB); widths: head (WH) and croup (WC); perimeters: thoracic (PT) and cannon (PC); scores: gait (SG), morphology (Morf) and total (Stotal). The components of (co) variance, heritability (h²), genetic and phenotypic correlations between the linear characteristics were obtained using the restricted maximum likelihood method using the AIREMLF90 program. The characteristics obtained by scoring scores were assessed by Bayesian analysis, using the THRGIBBSF90 program and the POSTGIBBSF90 application. For the identification of the lines, data from 60,795 MM horses (24,037 males and 36,758 females) were used, distributed throughout the national territory and in all states of the federation, genotyped in a paternity test by DNA examination for 13 microsatellite loci between years 2005 to 2016. For verification of the possible existence of lines the Discriminant Analysis of the Principal Components (DAPC) was carried out, using the program R. The Bayesian Information Criterion - BIC was used to identify the number optimal number of genetic (K) groups. To choose the ideal number of main components (PCs) to be retained in the analysis, the α-score was calculated using the adegenet package of the program R. The h2 obtained were: HW (0.46); HC (0.46); LH (0.20), LN (0.21), LBL (0.27), LC (0.23), LS (0.21); LB (0.35); WH (0.24); WC (0.25); PT (0.22); PC (0.18); SG (0.21), Morf (0.22) and Stotal (0.26). The genetic correlations ranged from zero, between CP and And, to 0.96 between AC and AG. The phenotypic correlations ranged from zero, between AG and Morf, to 0.85 between And and Morf. The ideal number of groups was 300 and the main components retained in the DAPC were 35, chosen from the lowest BIC value (300) and highest α-score value (35 and 0.8), respectively. Was not observed the existence of dispersion of values along the DAPC graph, demonstrating the non-formation of groups or any genetic distance between animals within the MM breed. The effects of sex, farm, year of birth and registration must be included in the analysis model to estimate genetic parameters for the morphofunctional characteristics of the MM breed. Withers and croup height characteristics must respond to selection, resulting in genetic progress in MM animals. The selection for withers height should result in correlated changes in the height of the croup and in the body length, as well as the selection for total score may lead to the improvement of the genetic merit of the morphology of animals of the MM breed. The existence of lines in the MM breed was not genetically identified, considering data from microsatellites of animals evaluated from the year 2005.A raça Mangalarga Marchador (MM) originária na região sul no estado de Minas Gerais é a maior raça de equinos criados no Brasil. Os objetivos deste estudo foram estimar os efeitos de ambiente e os parâmetros genéticos de características lineares e escores de pontuação (andamento, morfologia e total) obtidos no momento do registro definitivo de animais da raça MM, além de também identificar a existência de possíveis linhagens nesta raça, levando em consideração a frequência alélica observada a partir de informações obtidas por genotipagem em marcadores microssatélites utilizando análise discriminante de componentes principais. Para a obtenção dos parâmetros genéticos avaliaram-se 167.764 animais de 14.252 fazendas entre os anos de 1967 a 2016. As características avaliadas foram alturas: de cernelha (AC) e garupa (AG); comprimentos: de cabeça (Ccab), pescoço (CP), espádua (CE), dorso-lombo (CDL), garupa (CG), corporal (CC); larguras: de cabeça (LC) e garupa (LG); perímetros: torácico (PT) e de canela (PC); pontuações: andamento (And), morfologia (Morf) e total (Ptotal). Os componentes de (co)variância, herdabilidade (h²), correlações genéticas e fenotípicas entre as características lineares foram obtidos pelo método da máxima verossimilhança restrita utilizando o programa AIREMLF90. As características obtidas por escore de pontuação foram avaliadas por análise bayesiana, por meio do programa THRGIBBSF90 e aplicativo POSTGIBBSF90. Para a identificação das linhagens foram utilizados dados de 60.795 equinos da raça MM (24.037 machos e 36.758 fêmeas), distribuídos por todo o território nacional e em todos os estados da federação, genotipados em teste de paternidade por exame de DNA para 13 loci microssatélites entre os anos de 2005 a 2016. Para verificação da possível existência de linhagens foi realizada a análise discriminante dos componentes principais (DAPC), por meio do programa R. O critério de informação bayesiana (Bayesian Information Criterion – BIC) foi utilizado para identificar o número ótimo de grupos (K) genéticos. Para escolha do número ideal de componentes principais (PCs) a serem retidos na análise, foi calculado o α-score por meio do pacote adegenet do programa R. As estimativas de h² obtidas foram: AC (0,46), AG (0,46), Ccab (0,20), CP (0,21), CDL (0,27), CG (0,23), CE (0,21) e CC (0,35), LC (0,24), LG (0,25), PT (0,22), PC (0,18), And (0,21), Morf (0,22) e Ptotal (0,26). As correlações genéticas variaram de zero, entre CP e And, a 0,96 entre AC e AG. As correlações fenotípicas variaram de zero, entre AG e Morf, a 0,85 entre And e Morf. O número ideal de grupos foi de 300 e de componentes principais retidos na DAPC foram 35, escolhidos a partir do menor valor de BIC (300) e maior valor de α-score (35 e 0,8), respectivamente. Não foi observada a existência de dispersão dos valores ao longo do gráfico da DAPC, demonstrando a não formação de grupos ou qualquer distanciamento genético entre animais dentro da raça MM. Os efeitos de sexo, fazenda, ano de nascimento e de registro devem ser incluídos no modelo de análise para estimar parâmetros genéticos para as características morfofuncionais da raça MM. As características de altura de cernelha e garupa devem responder a seleção, resultando em progresso genético em animais MM. A seleção para altura de cernelha deve resultar em mudanças correlacionadas na altura da garupa e no comprimento corporal, assim como a seleção para pontuação total poderá levar a melhoria do mérito genético da morfologia de animais da raça MM. Não foi identificada geneticamente a existência de linhagens na raça MM, considerando dados de microssatélites de animais avaliados a partir do ano de 2005.Universidade Federal de LavrasPrograma de Pós-Graduação em ZootecniaUFLAbrasilDepartamento de ZootecniaFreitas, Rilke Tadeu Fonseca deMeirelles, Sarah Laguna ConceiçãoMoura, Raquel Silva deFreitas, Rilke Tadeu Fonseca deMeirelles, Sarah Laguna ConceiçãoToral, Fábio Luiz BuraneloProcópio, Alessandro MoreiraMuniz, Joel AugustoSouza, Felipe Amorim Caetano de2021-04-06T16:27:07Z2021-04-06T16:27:07Z2021-04-062021-02-10info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfSOUZA, F. A. C. de. Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador. 2021. 94 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021.http://repositorio.ufla.br/jspui/handle/1/46182porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLA2023-05-11T20:04:26Zoai:localhost:1/46182Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2023-05-11T20:04:26Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
Genetic parameters of morphofunctional characteristics and identification of lines in the mangalarga marchador breed
title Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
spellingShingle Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
Souza, Felipe Amorim Caetano de
Equus caballus
Mangalarga Marchador
Estrutura da população
Herdabilidade
Population structure
Heritability
Zootecnia
title_short Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
title_full Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
title_fullStr Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
title_full_unstemmed Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
title_sort Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador
author Souza, Felipe Amorim Caetano de
author_facet Souza, Felipe Amorim Caetano de
author_role author
dc.contributor.none.fl_str_mv Freitas, Rilke Tadeu Fonseca de
Meirelles, Sarah Laguna Conceição
Moura, Raquel Silva de
Freitas, Rilke Tadeu Fonseca de
Meirelles, Sarah Laguna Conceição
Toral, Fábio Luiz Buranelo
Procópio, Alessandro Moreira
Muniz, Joel Augusto
dc.contributor.author.fl_str_mv Souza, Felipe Amorim Caetano de
dc.subject.por.fl_str_mv Equus caballus
Mangalarga Marchador
Estrutura da população
Herdabilidade
Population structure
Heritability
Zootecnia
topic Equus caballus
Mangalarga Marchador
Estrutura da população
Herdabilidade
Population structure
Heritability
Zootecnia
description The Mangalarga Marchador (MM) breed originating in the southern region in the state of Minas Gerais is the largest breed of horses raised in Brazil. The objectives of this study were to estimate the effects of the environment and the genetic parameters of linear characteristics and score scores (gait, morphology and total) obtained at the time of the definitive registration of MM animals, as well as to identify the existence of possible lines in this breed, taking into account the allele frequency observed from information obtained by genotyping in microsatellite markers using discriminant analysis of principal components. To obtain the genetic parameters, data from 167,764 animals from 14,252 farms between 1967 and 2016 were evaluated. The characteristics evaluated were heights: withers (HW) and croup (HC); lengths: head (LH), neck (LN), shoulder (LS), back-loin (LBL), croup (LC), body (LB); widths: head (WH) and croup (WC); perimeters: thoracic (PT) and cannon (PC); scores: gait (SG), morphology (Morf) and total (Stotal). The components of (co) variance, heritability (h²), genetic and phenotypic correlations between the linear characteristics were obtained using the restricted maximum likelihood method using the AIREMLF90 program. The characteristics obtained by scoring scores were assessed by Bayesian analysis, using the THRGIBBSF90 program and the POSTGIBBSF90 application. For the identification of the lines, data from 60,795 MM horses (24,037 males and 36,758 females) were used, distributed throughout the national territory and in all states of the federation, genotyped in a paternity test by DNA examination for 13 microsatellite loci between years 2005 to 2016. For verification of the possible existence of lines the Discriminant Analysis of the Principal Components (DAPC) was carried out, using the program R. The Bayesian Information Criterion - BIC was used to identify the number optimal number of genetic (K) groups. To choose the ideal number of main components (PCs) to be retained in the analysis, the α-score was calculated using the adegenet package of the program R. The h2 obtained were: HW (0.46); HC (0.46); LH (0.20), LN (0.21), LBL (0.27), LC (0.23), LS (0.21); LB (0.35); WH (0.24); WC (0.25); PT (0.22); PC (0.18); SG (0.21), Morf (0.22) and Stotal (0.26). The genetic correlations ranged from zero, between CP and And, to 0.96 between AC and AG. The phenotypic correlations ranged from zero, between AG and Morf, to 0.85 between And and Morf. The ideal number of groups was 300 and the main components retained in the DAPC were 35, chosen from the lowest BIC value (300) and highest α-score value (35 and 0.8), respectively. Was not observed the existence of dispersion of values along the DAPC graph, demonstrating the non-formation of groups or any genetic distance between animals within the MM breed. The effects of sex, farm, year of birth and registration must be included in the analysis model to estimate genetic parameters for the morphofunctional characteristics of the MM breed. Withers and croup height characteristics must respond to selection, resulting in genetic progress in MM animals. The selection for withers height should result in correlated changes in the height of the croup and in the body length, as well as the selection for total score may lead to the improvement of the genetic merit of the morphology of animals of the MM breed. The existence of lines in the MM breed was not genetically identified, considering data from microsatellites of animals evaluated from the year 2005.
publishDate 2021
dc.date.none.fl_str_mv 2021-04-06T16:27:07Z
2021-04-06T16:27:07Z
2021-04-06
2021-02-10
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SOUZA, F. A. C. de. Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador. 2021. 94 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021.
http://repositorio.ufla.br/jspui/handle/1/46182
identifier_str_mv SOUZA, F. A. C. de. Parâmetros genéticos de características morfofuncionais e identificação de linhagens na raça Mangalarga Marchador. 2021. 94 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021.
url http://repositorio.ufla.br/jspui/handle/1/46182
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language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-Graduação em Zootecnia
UFLA
brasil
Departamento de Zootecnia
publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-Graduação em Zootecnia
UFLA
brasil
Departamento de Zootecnia
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instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Repositório Institucional da UFLA
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