Modeling ecological niche of tree species in Brazilian tropical area

Detalhes bibliográficos
Autor(a) principal: Carvalho, Mônica Canaan
Data de Publicação: 2017
Outros Autores: Gomide, Lucas Rezende, Santos, Rubens Manoel dos, Scolforo, José Roberto Soares, Carvalho, Luís Marcelo Tavares de, Mello, José Márcio de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/14742
Resumo: Modeling of the ecological niche of vegetal species is useful for understanding the species-environment relationship, for prediction of responses to climate changes and for correct reforestation programs and establishment of plantation’s recommendation. The objective of this work was to establish a model for the distribution of four tree species (Casearia sylvestris, Copaifera langsdorffii, Croton floribundus and Tapirira guianensis), widely used in reforestation projects in the state of Minas Gerais, Brazil. In addition, we analyzed the relationship between environmental characteristics and the occurrence of species and tested the performance of Random Forest and Artificial Neural Networks as modeling methods. These methods were evaluated by their overall accuracy, sensitivity, specificity, Kappa, true skill statistic and the area under the receiver operating curve. The results showed the species Casearia sylvestris, Copaifera langsdorffii and Tapirira guianensis widely occurring in the state of Minas Gerais, including a broad range of environmental variables. Croton floribundus had restricted occurrence in the southern state, showing narrow environmental variation. The resulting algorithms demonstrated greater performance when modeling restricted geographic and environmental species, as well as species occurring with high prevalence in data. The algorithm Random Forest performed better for distribution modeling of all species, although the results varied for each metric and species. The maps generated had acceptable metrics and are supported by and ecological information obtained from other sources, constituting a useful tool to understand the ecology and biogeography of the target species.
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spelling Modeling ecological niche of tree species in Brazilian tropical areaModelagem do nicho ecológicos de espécies arbóreas em uma área tropical brasileiraArtificial neural networksPhytogeographyRandom forestFitogeografiaRandom forestRedes neurais artificiaisModeling of the ecological niche of vegetal species is useful for understanding the species-environment relationship, for prediction of responses to climate changes and for correct reforestation programs and establishment of plantation’s recommendation. The objective of this work was to establish a model for the distribution of four tree species (Casearia sylvestris, Copaifera langsdorffii, Croton floribundus and Tapirira guianensis), widely used in reforestation projects in the state of Minas Gerais, Brazil. In addition, we analyzed the relationship between environmental characteristics and the occurrence of species and tested the performance of Random Forest and Artificial Neural Networks as modeling methods. These methods were evaluated by their overall accuracy, sensitivity, specificity, Kappa, true skill statistic and the area under the receiver operating curve. The results showed the species Casearia sylvestris, Copaifera langsdorffii and Tapirira guianensis widely occurring in the state of Minas Gerais, including a broad range of environmental variables. Croton floribundus had restricted occurrence in the southern state, showing narrow environmental variation. The resulting algorithms demonstrated greater performance when modeling restricted geographic and environmental species, as well as species occurring with high prevalence in data. The algorithm Random Forest performed better for distribution modeling of all species, although the results varied for each metric and species. The maps generated had acceptable metrics and are supported by and ecological information obtained from other sources, constituting a useful tool to understand the ecology and biogeography of the target species.A modelagem de nicho ecológico de uma espécie é útil para a compreensão da relação espécie-ambiente, para a previsão do comportamento frente às alterações climáticas e para a indicação correta em reflorestamentos e estabelecimento de plantações. O objetivo foi modelar a distribuição de quatro espécies arbóreas amplamente utilizadas em projetos de reflorestamento no estado de Minas Gerais (Casearia sylvestris, Copaifera langsdorffii, Croton floribundus e Tapirira guianensis). Como complemento, o objetivo foi analisar a relação entre as características ambientais e a ocorrência de espécies e testar o desempenho das técnicas random forest e redes neurais artificiais como métodos de modelagem. Estes métodos foram avaliados pelas métricas de acurácia global, sensibilidade, especificidade, kappa, true skill statistic e área sob a curva. Verificou-se que as espécies Casearia sylvestris, Copaifera langsdorffii e Tapirira guianensis apresentaram ampla área de ocorrência no estado Minas Gerais, cobrindo ampla gama de variáveis ambientais. Já Croton floribundus demonstrou ocorrência restrita do sul do estado, mostrando estreita variação ambiental. Os resultados dos algoritmos demonstraram maior desempenho na modelagem de espécies geograficamente e ambientalmente restritas, bem como espécies com alta prevalência em dados de ocorrência. O algoritmo random forest alcançou melhor desempenho na modelagem da distribuição de todas as espécies, embora os resultados variem para cada métrica e espécie. Os mapas gerados possuem métricas aceitáveis e são apoiadas por informações ecológicas obtidas em outras fontes, constituindo uma ferramenta útil no entendimento de sua ecologia e biogeografia.Universidade Federal de Lavras (UFLA)2017-06-232017-08-01T20:16:03Z2017-08-01T20:16:03Z2017-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfCARVALHO, M. C. et al. Modeling ecological niche of tree species in Brazilian tropical area. CERNE, Lavras, v. 23, n. 2, p. 229-240, 2017. DOI: 10.1590/01047760201723022308.http://repositorio.ufla.br/jspui/handle/1/147422317-63420104-7760reponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAengCopyright (c) 2017 CERNEAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessCarvalho, Mônica CanaanGomide, Lucas RezendeSantos, Rubens Manoel dosScolforo, José Roberto SoaresCarvalho, Luís Marcelo Tavares deMello, José Márcio de2021-03-14T02:10:44Zoai:localhost:1/14742Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2021-03-14T02:10:44Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv Modeling ecological niche of tree species in Brazilian tropical area
Modelagem do nicho ecológicos de espécies arbóreas em uma área tropical brasileira
title Modeling ecological niche of tree species in Brazilian tropical area
spellingShingle Modeling ecological niche of tree species in Brazilian tropical area
Carvalho, Mônica Canaan
Artificial neural networks
Phytogeography
Random forest
Fitogeografia
Random forest
Redes neurais artificiais
title_short Modeling ecological niche of tree species in Brazilian tropical area
title_full Modeling ecological niche of tree species in Brazilian tropical area
title_fullStr Modeling ecological niche of tree species in Brazilian tropical area
title_full_unstemmed Modeling ecological niche of tree species in Brazilian tropical area
title_sort Modeling ecological niche of tree species in Brazilian tropical area
author Carvalho, Mônica Canaan
author_facet Carvalho, Mônica Canaan
Gomide, Lucas Rezende
Santos, Rubens Manoel dos
Scolforo, José Roberto Soares
Carvalho, Luís Marcelo Tavares de
Mello, José Márcio de
author_role author
author2 Gomide, Lucas Rezende
Santos, Rubens Manoel dos
Scolforo, José Roberto Soares
Carvalho, Luís Marcelo Tavares de
Mello, José Márcio de
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Carvalho, Mônica Canaan
Gomide, Lucas Rezende
Santos, Rubens Manoel dos
Scolforo, José Roberto Soares
Carvalho, Luís Marcelo Tavares de
Mello, José Márcio de
dc.subject.por.fl_str_mv Artificial neural networks
Phytogeography
Random forest
Fitogeografia
Random forest
Redes neurais artificiais
topic Artificial neural networks
Phytogeography
Random forest
Fitogeografia
Random forest
Redes neurais artificiais
description Modeling of the ecological niche of vegetal species is useful for understanding the species-environment relationship, for prediction of responses to climate changes and for correct reforestation programs and establishment of plantation’s recommendation. The objective of this work was to establish a model for the distribution of four tree species (Casearia sylvestris, Copaifera langsdorffii, Croton floribundus and Tapirira guianensis), widely used in reforestation projects in the state of Minas Gerais, Brazil. In addition, we analyzed the relationship between environmental characteristics and the occurrence of species and tested the performance of Random Forest and Artificial Neural Networks as modeling methods. These methods were evaluated by their overall accuracy, sensitivity, specificity, Kappa, true skill statistic and the area under the receiver operating curve. The results showed the species Casearia sylvestris, Copaifera langsdorffii and Tapirira guianensis widely occurring in the state of Minas Gerais, including a broad range of environmental variables. Croton floribundus had restricted occurrence in the southern state, showing narrow environmental variation. The resulting algorithms demonstrated greater performance when modeling restricted geographic and environmental species, as well as species occurring with high prevalence in data. The algorithm Random Forest performed better for distribution modeling of all species, although the results varied for each metric and species. The maps generated had acceptable metrics and are supported by and ecological information obtained from other sources, constituting a useful tool to understand the ecology and biogeography of the target species.
publishDate 2017
dc.date.none.fl_str_mv 2017-06-23
2017-08-01T20:16:03Z
2017-08-01T20:16:03Z
2017-08-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv CARVALHO, M. C. et al. Modeling ecological niche of tree species in Brazilian tropical area. CERNE, Lavras, v. 23, n. 2, p. 229-240, 2017. DOI: 10.1590/01047760201723022308.
http://repositorio.ufla.br/jspui/handle/1/14742
identifier_str_mv CARVALHO, M. C. et al. Modeling ecological niche of tree species in Brazilian tropical area. CERNE, Lavras, v. 23, n. 2, p. 229-240, 2017. DOI: 10.1590/01047760201723022308.
url http://repositorio.ufla.br/jspui/handle/1/14742
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv Copyright (c) 2017 CERNE
Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2017 CERNE
Attribution 4.0 International
http://creativecommons.org/licenses/by/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Lavras (UFLA)
publisher.none.fl_str_mv Universidade Federal de Lavras (UFLA)
dc.source.none.fl_str_mv 2317-6342
0104-7760
reponame:Repositório Institucional da UFLA
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Repositório Institucional da UFLA
collection Repositório Institucional da UFLA
repository.name.fl_str_mv Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv nivaldo@ufla.br || repositorio.biblioteca@ufla.br
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