Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides

Detalhes bibliográficos
Autor(a) principal: Oliveira, Gleicy Kelly de
Data de Publicação: 2017
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/13310
Resumo: In the genus Solanum, the genomes A, P, B, C, D and E are identified based on studies of compatibility and chromosomal homology in interspecific hybrids. Characterization of centromeric repetitive sequences in species with some of these genomes have been shown that the dynamic of centromeric DNA is very distinct in Solanum. The centromere is a chromosomal locus usually made up of large sets of satellite DNA and/or transposable elements, responsible for the accurate segregation of the genetic material during cell division. Centromeric satellite repeats were identified in the species Solanum tuberosum, Solanum verrucosum and Solanum chomatophilum (carriers of the A, A and P genomes, respectively) and the distribution of these sequences in wild diploid potato species with genomes A, P, B, E was described. However, these repeats have not yet been evaluated in genomes C and D, present only in polyploid species, in association with genome A. The aim of this study was to verify the distribution pattern and the organization of centromeric sequences in the genomes A and P of Solanum, in the chromosomes of alopoliploid species (carriers of the AC and AD genomes) using the FISH technique. The centromeric sequences used as probes were obtained from S. tuberosum (St49 and St18), S. verrucosum (Sv54, Sv123, Sv161.5) and S. chomatophilum (Sc83, Sc111, Sc9 / 108). The rDNA sequence 45S was used as a positive control in experiments with centromeric probes. In the AC genome, the St18 and St49 probes were absent. In the AD genome the St18 repeat was also absent and the St49 sequence was present in the centromeric region of multiple AD chromosomes. The Sv54 sequence generated 4 centric signals in the AD genome and was absent in the AC genome. Regarding the AD genome, Sv 161.5 revealed four centromeric signals on two chromosome pairs, while in the AC genome, Sv 161.5 showed two centromeric signals in one chromosomal pair. Sv 123, revealed in both AC and AD genomes two signals in the centromere in one chromosomal pair. In the AC genome, the Sc83 probe generated scattered, non-centromeric signals along the chromosomes. In the AD genome, this same probe revealed two centromeric signals in one chromosome pair of the complement. In the AD genome, Sc92/108 revealed four intense signals in the centromeric regions of two pairs of chromosomes, whereas in the AC genome there was no signal. In AC, the Sc 111 probe showed dispersed signals, with higher intensity in the centromere. In the AD genome, the Sc111 repeat showed scattered signals in all chromosomes, as well as seven signals with higher intensity in centromeric and noncentromeric regions, four of them co-localized with Sc92/108. In general, the identified sequences in alopoliploids belong mostly to chromosomes of genome A , with a patter similar either to the genome A of S. tuberosum or S. verrucosum. None of the analyzed sequences is candidate to belong to genome C, whereas for genome D the sequence Sc83 can belong to this genome, with pattern similar to the genome P.
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spelling Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploidesDistribution of centromeric sequences of Solanum in genomes A, C and D of alopoliploid speciesDNA centroméricoEspécies alopoliploidesDNA repetitivoSolanum - Sequências centrométricasCentromeric DNAAlopoliploid speciesRepetitive DNASolanum - Centrometric sequencesMelhoramento VegetalIn the genus Solanum, the genomes A, P, B, C, D and E are identified based on studies of compatibility and chromosomal homology in interspecific hybrids. Characterization of centromeric repetitive sequences in species with some of these genomes have been shown that the dynamic of centromeric DNA is very distinct in Solanum. The centromere is a chromosomal locus usually made up of large sets of satellite DNA and/or transposable elements, responsible for the accurate segregation of the genetic material during cell division. Centromeric satellite repeats were identified in the species Solanum tuberosum, Solanum verrucosum and Solanum chomatophilum (carriers of the A, A and P genomes, respectively) and the distribution of these sequences in wild diploid potato species with genomes A, P, B, E was described. However, these repeats have not yet been evaluated in genomes C and D, present only in polyploid species, in association with genome A. The aim of this study was to verify the distribution pattern and the organization of centromeric sequences in the genomes A and P of Solanum, in the chromosomes of alopoliploid species (carriers of the AC and AD genomes) using the FISH technique. The centromeric sequences used as probes were obtained from S. tuberosum (St49 and St18), S. verrucosum (Sv54, Sv123, Sv161.5) and S. chomatophilum (Sc83, Sc111, Sc9 / 108). The rDNA sequence 45S was used as a positive control in experiments with centromeric probes. In the AC genome, the St18 and St49 probes were absent. In the AD genome the St18 repeat was also absent and the St49 sequence was present in the centromeric region of multiple AD chromosomes. The Sv54 sequence generated 4 centric signals in the AD genome and was absent in the AC genome. Regarding the AD genome, Sv 161.5 revealed four centromeric signals on two chromosome pairs, while in the AC genome, Sv 161.5 showed two centromeric signals in one chromosomal pair. Sv 123, revealed in both AC and AD genomes two signals in the centromere in one chromosomal pair. In the AC genome, the Sc83 probe generated scattered, non-centromeric signals along the chromosomes. In the AD genome, this same probe revealed two centromeric signals in one chromosome pair of the complement. In the AD genome, Sc92/108 revealed four intense signals in the centromeric regions of two pairs of chromosomes, whereas in the AC genome there was no signal. In AC, the Sc 111 probe showed dispersed signals, with higher intensity in the centromere. In the AD genome, the Sc111 repeat showed scattered signals in all chromosomes, as well as seven signals with higher intensity in centromeric and noncentromeric regions, four of them co-localized with Sc92/108. In general, the identified sequences in alopoliploids belong mostly to chromosomes of genome A , with a patter similar either to the genome A of S. tuberosum or S. verrucosum. None of the analyzed sequences is candidate to belong to genome C, whereas for genome D the sequence Sc83 can belong to this genome, with pattern similar to the genome P.Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)No gênero Solanum, são conhecidos os genomas A, P, B, C, D e E, com base no estudo de compatibilidade e homologia cromossômica em híbridos interespecíficos. A caracterização das sequências repetitivas dos centrômeros de espécies de alguns desses genomas tem revelado uma dinâmica bastante particular do DNA centromérico no gênero. O centrômero é um loco cromossômico formado, geralmente, por grandes conjuntos de DNA satélite e/ou elementos transponíveis, responsável pela segregação fiel do material genético durante a divisão celular. Repetições satélite centroméricas foram identificadas nas espécies Solanum tuberosum, Solanum verrucosum e Solanum chomatophilum (portadoras dos genomas A, A e P, respectivamente) e observadas a distribuição dessas sequências em espécies selvagens diploides de batata, portadoras dos genomas A, P, B, E. Entretanto essas repetições ainda não foram avaliadas nos genomas C e D, presentes apenas em espécies poliploides, em associação com o genoma A. Com esse intuito, o objetivo deste estudo foi verificar o padrão de distribuição e organização de sequências centroméricas características dos genomas A e P de Solanum nos cromossomos de espécies alopoliploides (portadoras dos genomas AC e AD), utilizando a técnica de FISH. As sequências centroméricas utilizadas como sondas, foram obtidas da espécie S. tuberosum (St49 e St18), S. verrucosum (Sv54, Sv123, Sv161.5) e S. chomatophilum (Sc83, Sc111, Sc9/108) e a sequência de rDNA 45S foi usada como controle positivo nos experimentos com sondas centroméricas. No genoma AC, as sondas St18 e St49, foram ausentes. Já no genoma AD a repetição St18, também esteve ausente e a sequência St49 presente na região centromérica de múltiplos cromossomos de AD. A sequência Sv54 gerou 4 sinais centoméricos no genoma AD e foi ausente no genoma AC. No genoma AD, Sv 161.5 evidenciou quatro sinais centroméricos em dois pares de cromossomos, enquanto no genoma AC, Sv 161.5 revelou dois sinais centroméricos em um par cromossômico. Sv 123, tanto no genoma AC quanto no genoma AD revelou dois sinais nos centrômeros em um par cromossômico. No genoma AC, a sonda Sc83 gerou sinais dispersos, não centroméricos, ao longo dos cromossomos. No genoma AD, essa mesma sonda revelou dois sinais centroméricos, em um par de cromossomos do complemento. No genoma AD, Sc92/108 revelou quatro sinais intensos nas regiões centroméricas de dois pares de cromossomos, enquanto no genoma AC não produziu sinal. Em AC, a sonda Sc 111, demonstrou sinais dispersos, com maior intensidade nos centrômeros. Já no genoma AD, a repetição Sc111 mostrou sinais dispersos em todos os cromossomos, como também sete sinais com maior intensidade em regiões centroméricas e não centroméricas, sendo que 4 sinais eram co-localizados com Sc92/108. De um modo geral, as sequências identificadas nos alopoliploides pertencem, em sua maioria, aos cromossomos do genoma A, com padrão semelhante ora o genoma A de S. tuberosum, ora ao de S. verrucosum. Nenhuma das sequências analisadas é candidata a pertencer ao genoma C, enquanto que para o genoma D a sequência Sc83 pode pertencer a esse genoma, com padrão similar ao genoma P.Universidade Federal de LavrasPrograma de Pós-Graduação em Genética e Melhoramento de PlantasUFLAbrasilDepartamento de BiologiaTorres, Giovana AugustaOliveira, Ludmila CristinaSousa, Saulo Marçal dePinto, César Augusto Brasil PereiraOliveira, Gleicy Kelly de2017-07-07T18:54:26Z2017-07-07T18:54:26Z2017-07-072017-06-30info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfOLIVEIRA, G. K. de. Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides. 2017. 50 p. Dissertação (Mestrado em Genética e Melhoramento de Plantas)-Universidade Federal de Lavras, Lavras, 2017.http://repositorio.ufla.br/jspui/handle/1/13310porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLA2023-05-03T13:16:08Zoai:localhost:1/13310Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2023-05-03T13:16:08Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
Distribution of centromeric sequences of Solanum in genomes A, C and D of alopoliploid species
title Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
spellingShingle Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
Oliveira, Gleicy Kelly de
DNA centromérico
Espécies alopoliploides
DNA repetitivo
Solanum - Sequências centrométricas
Centromeric DNA
Alopoliploid species
Repetitive DNA
Solanum - Centrometric sequences
Melhoramento Vegetal
title_short Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
title_full Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
title_fullStr Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
title_full_unstemmed Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
title_sort Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides
author Oliveira, Gleicy Kelly de
author_facet Oliveira, Gleicy Kelly de
author_role author
dc.contributor.none.fl_str_mv Torres, Giovana Augusta
Oliveira, Ludmila Cristina
Sousa, Saulo Marçal de
Pinto, César Augusto Brasil Pereira
dc.contributor.author.fl_str_mv Oliveira, Gleicy Kelly de
dc.subject.por.fl_str_mv DNA centromérico
Espécies alopoliploides
DNA repetitivo
Solanum - Sequências centrométricas
Centromeric DNA
Alopoliploid species
Repetitive DNA
Solanum - Centrometric sequences
Melhoramento Vegetal
topic DNA centromérico
Espécies alopoliploides
DNA repetitivo
Solanum - Sequências centrométricas
Centromeric DNA
Alopoliploid species
Repetitive DNA
Solanum - Centrometric sequences
Melhoramento Vegetal
description In the genus Solanum, the genomes A, P, B, C, D and E are identified based on studies of compatibility and chromosomal homology in interspecific hybrids. Characterization of centromeric repetitive sequences in species with some of these genomes have been shown that the dynamic of centromeric DNA is very distinct in Solanum. The centromere is a chromosomal locus usually made up of large sets of satellite DNA and/or transposable elements, responsible for the accurate segregation of the genetic material during cell division. Centromeric satellite repeats were identified in the species Solanum tuberosum, Solanum verrucosum and Solanum chomatophilum (carriers of the A, A and P genomes, respectively) and the distribution of these sequences in wild diploid potato species with genomes A, P, B, E was described. However, these repeats have not yet been evaluated in genomes C and D, present only in polyploid species, in association with genome A. The aim of this study was to verify the distribution pattern and the organization of centromeric sequences in the genomes A and P of Solanum, in the chromosomes of alopoliploid species (carriers of the AC and AD genomes) using the FISH technique. The centromeric sequences used as probes were obtained from S. tuberosum (St49 and St18), S. verrucosum (Sv54, Sv123, Sv161.5) and S. chomatophilum (Sc83, Sc111, Sc9 / 108). The rDNA sequence 45S was used as a positive control in experiments with centromeric probes. In the AC genome, the St18 and St49 probes were absent. In the AD genome the St18 repeat was also absent and the St49 sequence was present in the centromeric region of multiple AD chromosomes. The Sv54 sequence generated 4 centric signals in the AD genome and was absent in the AC genome. Regarding the AD genome, Sv 161.5 revealed four centromeric signals on two chromosome pairs, while in the AC genome, Sv 161.5 showed two centromeric signals in one chromosomal pair. Sv 123, revealed in both AC and AD genomes two signals in the centromere in one chromosomal pair. In the AC genome, the Sc83 probe generated scattered, non-centromeric signals along the chromosomes. In the AD genome, this same probe revealed two centromeric signals in one chromosome pair of the complement. In the AD genome, Sc92/108 revealed four intense signals in the centromeric regions of two pairs of chromosomes, whereas in the AC genome there was no signal. In AC, the Sc 111 probe showed dispersed signals, with higher intensity in the centromere. In the AD genome, the Sc111 repeat showed scattered signals in all chromosomes, as well as seven signals with higher intensity in centromeric and noncentromeric regions, four of them co-localized with Sc92/108. In general, the identified sequences in alopoliploids belong mostly to chromosomes of genome A , with a patter similar either to the genome A of S. tuberosum or S. verrucosum. None of the analyzed sequences is candidate to belong to genome C, whereas for genome D the sequence Sc83 can belong to this genome, with pattern similar to the genome P.
publishDate 2017
dc.date.none.fl_str_mv 2017-07-07T18:54:26Z
2017-07-07T18:54:26Z
2017-07-07
2017-06-30
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv OLIVEIRA, G. K. de. Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides. 2017. 50 p. Dissertação (Mestrado em Genética e Melhoramento de Plantas)-Universidade Federal de Lavras, Lavras, 2017.
http://repositorio.ufla.br/jspui/handle/1/13310
identifier_str_mv OLIVEIRA, G. K. de. Distribuição de sequências centroméricas de Solanum nos genomas A, C e D de espécies alopoliploides. 2017. 50 p. Dissertação (Mestrado em Genética e Melhoramento de Plantas)-Universidade Federal de Lavras, Lavras, 2017.
url http://repositorio.ufla.br/jspui/handle/1/13310
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dc.publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-Graduação em Genética e Melhoramento de Plantas
UFLA
brasil
Departamento de Biologia
publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-Graduação em Genética e Melhoramento de Plantas
UFLA
brasil
Departamento de Biologia
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