Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | spa |
Título da fonte: | Repositório Institucional da UFLA |
Texto Completo: | http://repositorio.ufla.br/jspui/handle/1/12458 |
Resumo: | Gibberellins control various aspects of plants growing and development, including seed germination, stem elongation, leaves expansion, flower and seed development. They are also involved in phase changes in some species, as from vegetative transition to reproductive. Most of these aspects seem to be regulated by DELLA proteins, which are negative regulators of the induced growth by GAs. The asynchronism in flowering processes of coffee and pineapple plants is recognized. This is also directly associated with the low quality of productions of both species. Studies that allow understanding this process are very important. This article shows a characterization in silico of supposed DELLA proteins in the database of CAFEST genome, gene bank of pineapple and GenBank to understand the role of DELLA proteins in the coffee and pineapple flowering processes. Structural similarity and expression profile in silico showed by probable DELLA genes in coffee corroborated the classification of DELLA proteins and suggest the presence of two of them in this specie. In pineapple, after an exhausted search, none of the bank genes proteins from this specie and the GenBank showed DELLA motifs in the four domains with structural functions related to the control of GAs. Nevertheless, in the future these analyses should be repeated due to the possibility that the corresponding sequences of these genes may not be present in the analyzed database. |
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Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. MerrIn silico identification of DELLA proteins in plants of Coffea arabica L. and Ananas comosus L. MerrBioinformáticaCAFESTFloraciónGiberelinasBioinformaticsFlowering processGibberellinsGibberellins control various aspects of plants growing and development, including seed germination, stem elongation, leaves expansion, flower and seed development. They are also involved in phase changes in some species, as from vegetative transition to reproductive. Most of these aspects seem to be regulated by DELLA proteins, which are negative regulators of the induced growth by GAs. The asynchronism in flowering processes of coffee and pineapple plants is recognized. This is also directly associated with the low quality of productions of both species. Studies that allow understanding this process are very important. This article shows a characterization in silico of supposed DELLA proteins in the database of CAFEST genome, gene bank of pineapple and GenBank to understand the role of DELLA proteins in the coffee and pineapple flowering processes. Structural similarity and expression profile in silico showed by probable DELLA genes in coffee corroborated the classification of DELLA proteins and suggest the presence of two of them in this specie. In pineapple, after an exhausted search, none of the bank genes proteins from this specie and the GenBank showed DELLA motifs in the four domains with structural functions related to the control of GAs. Nevertheless, in the future these analyses should be repeated due to the possibility that the corresponding sequences of these genes may not be present in the analyzed database.Las giberelinas (GAs) controlan diversos aspectos del crecimiento y desarrollo de las plantas, incluidas la germinación de semillas, elongación de tallos, expansión de hojas, desarrollo de flores y semillas, y además en algunas especies están involucradas en cambios de fase como la transición vegetativa a reproductiva. Muchos de estos aspectos parecen estar regulados por las proteínas DELLA, que son reguladores negativos del crecimiento inducido por GAs. El asincronismo en los procesos de floración de las plantas de cafeto y piña es reconocido, y está directamente asociado con la baja calidad de las producciones de ambas especies, así estudios que permitan la mejor comprensión de este proceso son de gran importancia. Para entender el papel de proteínas DELLA en los procesos florales de cafeto y piña, este artículo muestra una caracterización in silico de supuestas proteínas DELLA en las bases de datos del genoma CAFEST, banco de genes de piña y el GenBank. La similitud estructural y el perfil de expresión in silico exhibido por los probables genes DELLA en cafeto corroboraron la clasificación de sus proteínas DELLA y sugieren la presencia de dos de ellas en esta especie. En piña a pesar de realizar una búsqueda exhaustiva, ninguna de las proteínas del banco de genes de esta especie y del GenBank mostró motivos DELLA en los cuatro dominios con funciones estructurales relacionadas con el control de las GAs. Sin embargo, en el futuro deben repetirse estos análisis pues esto puede deberse a que aún las secuencias correspondientes a estos genes no están presentes en las bases de datos analizadas.Instituto de Biotecnología de las Plantas2017-03-10T17:03:37Z2017-03-10T17:03:37Z2012-07info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfESPINOSA, M. A. et al. Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr. Biotecnología Vegetal, Santa Clara, CU, v. 12, n. 3, jul. 2012.http://repositorio.ufla.br/jspui/handle/1/12458Biotecnología Vegetalreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAEspinosa, Maita ÁvilaLima, Andre AlmeidaSágio, Solange AparecidaCoelho, Carla PriscilaAlemán, Elizabeth IsaacGonzález-Olmedo, JustoChalfun-Junior, Antônioinfo:eu-repo/semantics/openAccessspa2017-03-10T17:03:37Zoai:localhost:1/12458Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2017-03-10T17:03:37Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false |
dc.title.none.fl_str_mv |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr In silico identification of DELLA proteins in plants of Coffea arabica L. and Ananas comosus L. Merr |
title |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
spellingShingle |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr Espinosa, Maita Ávila Bioinformática CAFEST Floración Giberelinas Bioinformatics Flowering process Gibberellins |
title_short |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
title_full |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
title_fullStr |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
title_full_unstemmed |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
title_sort |
Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr |
author |
Espinosa, Maita Ávila |
author_facet |
Espinosa, Maita Ávila Lima, Andre Almeida Ságio, Solange Aparecida Coelho, Carla Priscila Alemán, Elizabeth Isaac González-Olmedo, Justo Chalfun-Junior, Antônio |
author_role |
author |
author2 |
Lima, Andre Almeida Ságio, Solange Aparecida Coelho, Carla Priscila Alemán, Elizabeth Isaac González-Olmedo, Justo Chalfun-Junior, Antônio |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Espinosa, Maita Ávila Lima, Andre Almeida Ságio, Solange Aparecida Coelho, Carla Priscila Alemán, Elizabeth Isaac González-Olmedo, Justo Chalfun-Junior, Antônio |
dc.subject.por.fl_str_mv |
Bioinformática CAFEST Floración Giberelinas Bioinformatics Flowering process Gibberellins |
topic |
Bioinformática CAFEST Floración Giberelinas Bioinformatics Flowering process Gibberellins |
description |
Gibberellins control various aspects of plants growing and development, including seed germination, stem elongation, leaves expansion, flower and seed development. They are also involved in phase changes in some species, as from vegetative transition to reproductive. Most of these aspects seem to be regulated by DELLA proteins, which are negative regulators of the induced growth by GAs. The asynchronism in flowering processes of coffee and pineapple plants is recognized. This is also directly associated with the low quality of productions of both species. Studies that allow understanding this process are very important. This article shows a characterization in silico of supposed DELLA proteins in the database of CAFEST genome, gene bank of pineapple and GenBank to understand the role of DELLA proteins in the coffee and pineapple flowering processes. Structural similarity and expression profile in silico showed by probable DELLA genes in coffee corroborated the classification of DELLA proteins and suggest the presence of two of them in this specie. In pineapple, after an exhausted search, none of the bank genes proteins from this specie and the GenBank showed DELLA motifs in the four domains with structural functions related to the control of GAs. Nevertheless, in the future these analyses should be repeated due to the possibility that the corresponding sequences of these genes may not be present in the analyzed database. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-07 2017-03-10T17:03:37Z 2017-03-10T17:03:37Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
ESPINOSA, M. A. et al. Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr. Biotecnología Vegetal, Santa Clara, CU, v. 12, n. 3, jul. 2012. http://repositorio.ufla.br/jspui/handle/1/12458 |
identifier_str_mv |
ESPINOSA, M. A. et al. Identificación in silico de proteínas DELLA en plantas de Coffea arabica L. y Ananas comosus L. Merr. Biotecnología Vegetal, Santa Clara, CU, v. 12, n. 3, jul. 2012. |
url |
http://repositorio.ufla.br/jspui/handle/1/12458 |
dc.language.iso.fl_str_mv |
spa |
language |
spa |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Instituto de Biotecnología de las Plantas |
publisher.none.fl_str_mv |
Instituto de Biotecnología de las Plantas |
dc.source.none.fl_str_mv |
Biotecnología Vegetal reponame:Repositório Institucional da UFLA instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
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Universidade Federal de Lavras (UFLA) |
instacron_str |
UFLA |
institution |
UFLA |
reponame_str |
Repositório Institucional da UFLA |
collection |
Repositório Institucional da UFLA |
repository.name.fl_str_mv |
Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA) |
repository.mail.fl_str_mv |
nivaldo@ufla.br || repositorio.biblioteca@ufla.br |
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1807835220649443328 |