N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe

Detalhes bibliográficos
Autor(a) principal: Souza, André Alves de
Data de Publicação: 2022
Tipo de documento: Tese
Idioma: eng
Título da fonte: Repositório Institucional da UFLA
Texto Completo: http://repositorio.ufla.br/jspui/handle/1/56104
Resumo: One of the great challenges in the recovery process of degraded areas is the supply of nitrogen (N) and phosphorus (P) together with the need to increase the levels of organic matter. In this sense, the use of native grasses in association with phosphate-solubilizing bacteria (BSF) together with the symbiotic association between tree legumes and noduliferous N2-fixing bacteria (BFNN), appears as a good alternative to meet this need. However, the lack of studies with plant species better adapted to the conditions where they will be used in association with native strains, becomes the major obstacle to the expansion of the use of this combination. The objective of this work was to evaluate the efficiency of BFNN and BSF in association with Enterolobium contortisiliquum and Paspalum densum respectively and the prospection of genes of bacteria efficient in BFN and P solubilization. The symbiotic efficiency of BFNN was evaluated in a greenhouse under conditions axenic strains with the inoculation of 39 strains of the genus Bradyrhizobium compared with an efficient strain and controls without inoculation. Subsequently, 12 strains selected among the 39 were evaluated in non-sterile soil from an iron mining area, using the same controls as in the previous test. To evaluate the efficiency of BSF, an in vitro solubilization test was initially performed with 58 strains inoculated in GELP medium containing FePO4, compared with a control without inoculation. Of these 58 strains, nine were selected to carry out a test with soil from a mining area, in association with Paspalum densum and having as controls soluble or insoluble sources of P without inoculation. Four strains were selected based on soil assays for the study of genomic DNA. Assays with BFNN showed that plants inoculated with strains selected for genomic DNA sequencing had high symbiotic efficiency in association with Enterolobium contortisiliquum, evidenced by the good performance in the analyzed variables. Genomic DNA analysis showed the presence of important genes linked to tolerance to high Fe and Mn conditions, such as pin5, acdS, sodA, bfr, gshB and gor genes. The tests with BSF showed a good performance of three of the four strains selected for genomic DNA analysis, among them the UFLA 219 strain of the genus Burkholderia, which had also presented the best performance in the in vitro test. The genomic DNA of the BSF showed the presence of a series of genes linked to the phosphate solubilization mechanism, with emphasis on the genes related to the release of organic acids. In this way, it was demonstrated that the success of the association between growth-promoting bacteria and the inoculated plants depends on genes related to more specific mechanisms in the promotion of growth, but also on genes that confer greater adaptability to the studied strains.
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spelling N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of FeEficiência da fixação de N2 e da solubilização de fosfato, adaptabilidade e genes funcionais relacionados, em estirpes de bactérias isoladas de solos com alto teor de FeGenomeBiological nitrogen fixationPhosphate solubilizationGenomaFixação biológica de nitrogênioSolubilização de fosfatoEnterolobium contortisiliquumPaspalum densumFertilidade do Solo e AdubaçãoOne of the great challenges in the recovery process of degraded areas is the supply of nitrogen (N) and phosphorus (P) together with the need to increase the levels of organic matter. In this sense, the use of native grasses in association with phosphate-solubilizing bacteria (BSF) together with the symbiotic association between tree legumes and noduliferous N2-fixing bacteria (BFNN), appears as a good alternative to meet this need. However, the lack of studies with plant species better adapted to the conditions where they will be used in association with native strains, becomes the major obstacle to the expansion of the use of this combination. The objective of this work was to evaluate the efficiency of BFNN and BSF in association with Enterolobium contortisiliquum and Paspalum densum respectively and the prospection of genes of bacteria efficient in BFN and P solubilization. The symbiotic efficiency of BFNN was evaluated in a greenhouse under conditions axenic strains with the inoculation of 39 strains of the genus Bradyrhizobium compared with an efficient strain and controls without inoculation. Subsequently, 12 strains selected among the 39 were evaluated in non-sterile soil from an iron mining area, using the same controls as in the previous test. To evaluate the efficiency of BSF, an in vitro solubilization test was initially performed with 58 strains inoculated in GELP medium containing FePO4, compared with a control without inoculation. Of these 58 strains, nine were selected to carry out a test with soil from a mining area, in association with Paspalum densum and having as controls soluble or insoluble sources of P without inoculation. Four strains were selected based on soil assays for the study of genomic DNA. Assays with BFNN showed that plants inoculated with strains selected for genomic DNA sequencing had high symbiotic efficiency in association with Enterolobium contortisiliquum, evidenced by the good performance in the analyzed variables. Genomic DNA analysis showed the presence of important genes linked to tolerance to high Fe and Mn conditions, such as pin5, acdS, sodA, bfr, gshB and gor genes. The tests with BSF showed a good performance of three of the four strains selected for genomic DNA analysis, among them the UFLA 219 strain of the genus Burkholderia, which had also presented the best performance in the in vitro test. The genomic DNA of the BSF showed the presence of a series of genes linked to the phosphate solubilization mechanism, with emphasis on the genes related to the release of organic acids. In this way, it was demonstrated that the success of the association between growth-promoting bacteria and the inoculated plants depends on genes related to more specific mechanisms in the promotion of growth, but also on genes that confer greater adaptability to the studied strains.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Um dos grandes desafios no processo de recuperação de áreas degradadas é o fornecimento de nitrogênio (N) e fósforo (P) junto com a necessidade de aumentar os teores de matéria orgânica. Neste sentido o emprego de gramíneas nativas em associação com bactérias solubilizadoras de fosfato (BSF) junto com a associação simbiótica entre leguminosas arbóreas e bactérias fixadoras de N2 nodulíferas (BFNN), aparece como uma boa alternativa para suprir esta necessidade. Porém a carência de estudos com espécies vegetais melhor adaptadas as condições onde serão empregadas em associação com estirpes nativas, se torna o grande empecilho para a expansão do emprego dessa combinação. O objetivo desse trabalho foi avaliar a eficiência de BFNN e BSF em associação com Enterolobium contortisiliquum e Paspalum densum respectivamente e a prospecção de genes de bactérias eficientes na FBN e na solubilização de P. A eficiência simbiótica das BFNN foi avaliada em casa de vegetação em condições axênicas com a inoculação de 39 estirpes do gênero Bradyrhizobium comparadas com uma estirpe eficiente e controles sem inoculação. Posteriormente, 12 estirpes selecionadas entre as 39, foram avaliadas em condição de solo não estéril proveniente de uma área de mineração de ferro, utilizando os mesmos controles do ensaio anterior. Para avaliar a eficiência das BSF, inicialmente foi realizado um teste de solubilização in vitro com 58 estirpes inoculadas em meio GELP contento FePO4, comparadas com um controle sem inoculação. Destas 58 estirpes, nove foram selecionadas para a realização de um ensaio com o solo de uma área de mineração, em associação com Paspalum densum e tendo como controles fontes solúveis ou insolúveis de P sem inoculação. Quatro estirpes foram selecionadas com base nos ensaios em solo para o estudo do DNA genômico. Os ensaios com BFNN mostraram que plantas inoculadas com as estirpes selecionadas para o sequenciamento do DNA genômico tiveram alta eficiência simbiótica em associação com Enterolobium contortisiliquum, evidenciado pelo bom desempenho nas variáveis analisadas. A análise do DNA genômico mostrou a presença de importantes genes ligados a tolerância as condições de altos teores de Fe e Mn, como os genes pin5, acdS, sodA, bfr, gshB e gor. Os ensaios com BSF mostraram um bom desempenho de três das quatro estirpes selecionadas para análise do DNA genômico, dentre elas a estirpe UFLA 219 do gênero Burkholderia havia apresentado também o melhor desempenho no teste in vitro. O DNA genômico das BSF mostrou a presença de um série de genes ligados ao mecanismo de solubilização de fosfato com destaque para os genes relacionados a liberação de ácidos orgânicos. Dessa forma foi demonstrado que o sucesso da associação entre bactérias promotoras de crescimento e as plantas inoculadas, dependem de genes relacionados a mecanismos mais específicos na promoção de crescimento, mais também de genes que conferem maior adaptabilidade as estirpes estudadas.Universidade Federal de LavrasPrograma de Pós-graduação em Ciência do SoloUFLAbrasilDepartamento de Ciência do SoloMoreira, Fátima Maria de SouzaCosta, Elaine Martins daSantos, Rubens Manoel dosLongatti, Silvia Maria OliveiraAragão, Osnar Obede da SilvaSouza, André Alves de2023-03-10T16:09:11Z2023-03-10T16:09:11Z2023-03-102022-11-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfSOUZA, A. A. N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe. 2022. 94 p. Tese (Doutorado em Ciência do Solo)–Universidade Federal de Lavras, Lavras, 2023.http://repositorio.ufla.br/jspui/handle/1/56104enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLA2023-05-11T13:23:13Zoai:localhost:1/56104Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2023-05-11T13:23:13Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false
dc.title.none.fl_str_mv N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
Eficiência da fixação de N2 e da solubilização de fosfato, adaptabilidade e genes funcionais relacionados, em estirpes de bactérias isoladas de solos com alto teor de Fe
title N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
spellingShingle N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
Souza, André Alves de
Genome
Biological nitrogen fixation
Phosphate solubilization
Genoma
Fixação biológica de nitrogênio
Solubilização de fosfato
Enterolobium contortisiliquum
Paspalum densum
Fertilidade do Solo e Adubação
title_short N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
title_full N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
title_fullStr N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
title_full_unstemmed N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
title_sort N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe
author Souza, André Alves de
author_facet Souza, André Alves de
author_role author
dc.contributor.none.fl_str_mv Moreira, Fátima Maria de Souza
Costa, Elaine Martins da
Santos, Rubens Manoel dos
Longatti, Silvia Maria Oliveira
Aragão, Osnar Obede da Silva
dc.contributor.author.fl_str_mv Souza, André Alves de
dc.subject.por.fl_str_mv Genome
Biological nitrogen fixation
Phosphate solubilization
Genoma
Fixação biológica de nitrogênio
Solubilização de fosfato
Enterolobium contortisiliquum
Paspalum densum
Fertilidade do Solo e Adubação
topic Genome
Biological nitrogen fixation
Phosphate solubilization
Genoma
Fixação biológica de nitrogênio
Solubilização de fosfato
Enterolobium contortisiliquum
Paspalum densum
Fertilidade do Solo e Adubação
description One of the great challenges in the recovery process of degraded areas is the supply of nitrogen (N) and phosphorus (P) together with the need to increase the levels of organic matter. In this sense, the use of native grasses in association with phosphate-solubilizing bacteria (BSF) together with the symbiotic association between tree legumes and noduliferous N2-fixing bacteria (BFNN), appears as a good alternative to meet this need. However, the lack of studies with plant species better adapted to the conditions where they will be used in association with native strains, becomes the major obstacle to the expansion of the use of this combination. The objective of this work was to evaluate the efficiency of BFNN and BSF in association with Enterolobium contortisiliquum and Paspalum densum respectively and the prospection of genes of bacteria efficient in BFN and P solubilization. The symbiotic efficiency of BFNN was evaluated in a greenhouse under conditions axenic strains with the inoculation of 39 strains of the genus Bradyrhizobium compared with an efficient strain and controls without inoculation. Subsequently, 12 strains selected among the 39 were evaluated in non-sterile soil from an iron mining area, using the same controls as in the previous test. To evaluate the efficiency of BSF, an in vitro solubilization test was initially performed with 58 strains inoculated in GELP medium containing FePO4, compared with a control without inoculation. Of these 58 strains, nine were selected to carry out a test with soil from a mining area, in association with Paspalum densum and having as controls soluble or insoluble sources of P without inoculation. Four strains were selected based on soil assays for the study of genomic DNA. Assays with BFNN showed that plants inoculated with strains selected for genomic DNA sequencing had high symbiotic efficiency in association with Enterolobium contortisiliquum, evidenced by the good performance in the analyzed variables. Genomic DNA analysis showed the presence of important genes linked to tolerance to high Fe and Mn conditions, such as pin5, acdS, sodA, bfr, gshB and gor genes. The tests with BSF showed a good performance of three of the four strains selected for genomic DNA analysis, among them the UFLA 219 strain of the genus Burkholderia, which had also presented the best performance in the in vitro test. The genomic DNA of the BSF showed the presence of a series of genes linked to the phosphate solubilization mechanism, with emphasis on the genes related to the release of organic acids. In this way, it was demonstrated that the success of the association between growth-promoting bacteria and the inoculated plants depends on genes related to more specific mechanisms in the promotion of growth, but also on genes that confer greater adaptability to the studied strains.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-16
2023-03-10T16:09:11Z
2023-03-10T16:09:11Z
2023-03-10
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SOUZA, A. A. N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe. 2022. 94 p. Tese (Doutorado em Ciência do Solo)–Universidade Federal de Lavras, Lavras, 2023.
http://repositorio.ufla.br/jspui/handle/1/56104
identifier_str_mv SOUZA, A. A. N2-fixation and phosphate solubilization efficiencies, adaptability and related functional genes, in bacterial strains isolated from soils with high contents of Fe. 2022. 94 p. Tese (Doutorado em Ciência do Solo)–Universidade Federal de Lavras, Lavras, 2023.
url http://repositorio.ufla.br/jspui/handle/1/56104
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-graduação em Ciência do Solo
UFLA
brasil
Departamento de Ciência do Solo
publisher.none.fl_str_mv Universidade Federal de Lavras
Programa de Pós-graduação em Ciência do Solo
UFLA
brasil
Departamento de Ciência do Solo
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFLA
instname:Universidade Federal de Lavras (UFLA)
instacron:UFLA
instname_str Universidade Federal de Lavras (UFLA)
instacron_str UFLA
institution UFLA
reponame_str Repositório Institucional da UFLA
collection Repositório Institucional da UFLA
repository.name.fl_str_mv Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)
repository.mail.fl_str_mv nivaldo@ufla.br || repositorio.biblioteca@ufla.br
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