Individual-Based Model (IBM): An alternative framework for epidemiological compartment models
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFLA |
Texto Completo: | http://repositorio.ufla.br/jspui/handle/1/13945 |
Resumo: | A traditional approach to model infectious diseases is to use compartment models based on dierential equations, such as the SIR (Susceptible-Infected-Recovered) model. These models explain average behavior, but are inadequate to account for stochastic fluctuations of epidemiological variables. An alternative approach is to use Individual-Based Model (IBM), that represent each individual as a set of features that change dynamically over time. This allows modeling population phenomena as aggregates of individual interactions. This paper presents a general framework to model epidemiological systems using IBM as an alternative to replace or complement epidemiological compartment models. The proposed modeling approach is shown to allow the study of some phenomena which are related to nite-population demographic stochastic fluctuation. In particular, a procedure for the computation of the probability of disease eradication within a time horizon in the case of systems which have mean-field endemic equilibrium is presented as a direct application of the proposed approach. It is shown, how this general framework may be described as an algorithm suitable to model dierent types of compartment models. Numerical simulations illustrate how this approach may provide greater insight about a great variety of epidemiological systems. |
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Individual-Based Model (IBM): An alternative framework for epidemiological compartment modelsIndividual-Based modelMathematical epidemiologyStochastic fluctuationsEpidemiological compartment modelsModelo baseado em indivíduosEpidemiologia matemáticaFlutuações estocásticasModelo epidemiológico compartimentalA traditional approach to model infectious diseases is to use compartment models based on dierential equations, such as the SIR (Susceptible-Infected-Recovered) model. These models explain average behavior, but are inadequate to account for stochastic fluctuations of epidemiological variables. An alternative approach is to use Individual-Based Model (IBM), that represent each individual as a set of features that change dynamically over time. This allows modeling population phenomena as aggregates of individual interactions. This paper presents a general framework to model epidemiological systems using IBM as an alternative to replace or complement epidemiological compartment models. The proposed modeling approach is shown to allow the study of some phenomena which are related to nite-population demographic stochastic fluctuation. In particular, a procedure for the computation of the probability of disease eradication within a time horizon in the case of systems which have mean-field endemic equilibrium is presented as a direct application of the proposed approach. It is shown, how this general framework may be described as an algorithm suitable to model dierent types of compartment models. Numerical simulations illustrate how this approach may provide greater insight about a great variety of epidemiological systems.Universidade Federal de Lavras2016-03-302017-08-01T20:09:49Z2017-08-01T20:09:49Z2017-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPeer-reviewed Articleapplication/pdfapplication/pdfNEPOMUCENO, E. G.; TAKAHASHI, R. H. C.; AGUIRRE, L. A. Individual-Based Model (IBM): An alternative framework for epidemiological compartment models. Revista Brasileira de Biometria, Lavras, v. 34, n. 1, p. 133-162, mar. 2016.http://repositorio.ufla.br/jspui/handle/1/13945REVISTA BRASILEIRA DE BIOMETRIA; Vol 34 No 1 (2016); 133-1621983-0823reponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAenghttp://www.biometria.ufla.br/index.php/BBJ/article/view/95/34Copyright (c) 2016 Erivelton Geraldo NEPOMUCENO, Ricardo Hiroshi Caldeira TAKAHASHI, Luis Antonio AGUIRREAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessNepomuceno, Erivelton GeraldoTakahashi, Ricardo Hiroshi CaldeiraAguirre, Luis AntonioNepomuceno, Erivelton GeraldoTakahashi, Ricardo Hiroshi CaldeiraAguirre, Luis Antonio2021-04-26T12:54:18Zoai:localhost:1/13945Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2021-04-26T12:54:18Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false |
dc.title.none.fl_str_mv |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
title |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
spellingShingle |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models Nepomuceno, Erivelton Geraldo Individual-Based model Mathematical epidemiology Stochastic fluctuations Epidemiological compartment models Modelo baseado em indivíduos Epidemiologia matemática Flutuações estocásticas Modelo epidemiológico compartimental |
title_short |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
title_full |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
title_fullStr |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
title_full_unstemmed |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
title_sort |
Individual-Based Model (IBM): An alternative framework for epidemiological compartment models |
author |
Nepomuceno, Erivelton Geraldo |
author_facet |
Nepomuceno, Erivelton Geraldo Takahashi, Ricardo Hiroshi Caldeira Aguirre, Luis Antonio |
author_role |
author |
author2 |
Takahashi, Ricardo Hiroshi Caldeira Aguirre, Luis Antonio |
author2_role |
author author |
dc.contributor.author.fl_str_mv |
Nepomuceno, Erivelton Geraldo Takahashi, Ricardo Hiroshi Caldeira Aguirre, Luis Antonio Nepomuceno, Erivelton Geraldo Takahashi, Ricardo Hiroshi Caldeira Aguirre, Luis Antonio |
dc.subject.por.fl_str_mv |
Individual-Based model Mathematical epidemiology Stochastic fluctuations Epidemiological compartment models Modelo baseado em indivíduos Epidemiologia matemática Flutuações estocásticas Modelo epidemiológico compartimental |
topic |
Individual-Based model Mathematical epidemiology Stochastic fluctuations Epidemiological compartment models Modelo baseado em indivíduos Epidemiologia matemática Flutuações estocásticas Modelo epidemiológico compartimental |
description |
A traditional approach to model infectious diseases is to use compartment models based on dierential equations, such as the SIR (Susceptible-Infected-Recovered) model. These models explain average behavior, but are inadequate to account for stochastic fluctuations of epidemiological variables. An alternative approach is to use Individual-Based Model (IBM), that represent each individual as a set of features that change dynamically over time. This allows modeling population phenomena as aggregates of individual interactions. This paper presents a general framework to model epidemiological systems using IBM as an alternative to replace or complement epidemiological compartment models. The proposed modeling approach is shown to allow the study of some phenomena which are related to nite-population demographic stochastic fluctuation. In particular, a procedure for the computation of the probability of disease eradication within a time horizon in the case of systems which have mean-field endemic equilibrium is presented as a direct application of the proposed approach. It is shown, how this general framework may be described as an algorithm suitable to model dierent types of compartment models. Numerical simulations illustrate how this approach may provide greater insight about a great variety of epidemiological systems. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-03-30 2017-08-01T20:09:49Z 2017-08-01T20:09:49Z 2017-08-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Peer-reviewed Article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
NEPOMUCENO, E. G.; TAKAHASHI, R. H. C.; AGUIRRE, L. A. Individual-Based Model (IBM): An alternative framework for epidemiological compartment models. Revista Brasileira de Biometria, Lavras, v. 34, n. 1, p. 133-162, mar. 2016. http://repositorio.ufla.br/jspui/handle/1/13945 |
identifier_str_mv |
NEPOMUCENO, E. G.; TAKAHASHI, R. H. C.; AGUIRRE, L. A. Individual-Based Model (IBM): An alternative framework for epidemiological compartment models. Revista Brasileira de Biometria, Lavras, v. 34, n. 1, p. 133-162, mar. 2016. |
url |
http://repositorio.ufla.br/jspui/handle/1/13945 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
http://www.biometria.ufla.br/index.php/BBJ/article/view/95/34 |
dc.rights.driver.fl_str_mv |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Lavras |
publisher.none.fl_str_mv |
Universidade Federal de Lavras |
dc.source.none.fl_str_mv |
REVISTA BRASILEIRA DE BIOMETRIA; Vol 34 No 1 (2016); 133-162 1983-0823 reponame:Repositório Institucional da UFLA instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
instname_str |
Universidade Federal de Lavras (UFLA) |
instacron_str |
UFLA |
institution |
UFLA |
reponame_str |
Repositório Institucional da UFLA |
collection |
Repositório Institucional da UFLA |
repository.name.fl_str_mv |
Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA) |
repository.mail.fl_str_mv |
nivaldo@ufla.br || repositorio.biblioteca@ufla.br |
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1815439146634706944 |