Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Tipo de documento: | Tese |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFLA |
Texto Completo: | http://repositorio.ufla.br/jspui/handle/1/48500 |
Resumo: | Maternal undernutrition and overnutrition during gestation can cause different effects on muscle development and offspring performance. This study aimed to evaluate the differentially expressed genes (DEG), weighed genes co-expression networks (WGCNA), and their biological functions in skeletal muscle of offspring from dams supplemented or not with protein during mid-gestation. From 100 to 200 days of gestation, ten Tabapuã beef cows pregnant of male calves were assigned to one of two treatments: Control [(CON) - supply of basal diet achieving 5.5% of crude protein (CP); n = 6]; or Supplemented [(SUP) - basal diet plus a supplement with 40% of CP provided at the level of 3.5 g/kg of body weight; n = 4]. Muscle samples were collected from the progeny at the beginning of feedlot phase (260d of postnatal age) to RNA-seq, WGCNA and Gene Ontology (GO) enrichment analysis. A total of 310 DEG (q-value < 0.05) were identified for the effect of diet, being 187 and 123 genes down-regulated and up-regulated in the SUP diet, respectively. Within the SUP up-regulated genes, were genes related to insulin receptor signaling pathway (LOC107131843); apoptosis regulation (KRT18, KRT8 and KRT19); negative regulation of lipoprotein lipase activity (ANGPTL4) and potassium ion transmembrane transport (KCNH3). The ENSBTAG00000032057 gene, involved in the ATP synthesis coupled proton transport, were down-regulated in SUP diet. In WGCNA, within hub genes identified in the module negatively associated with diet were ANGPTL4 and ANKRD6 (associated with Wnt signaling pathway); whereas in the modules positively correlated was KLHL10 (homeostasis of number of cells within a tissue). The GO analysis showed that DEG were mainly enriched in potassium ion transmembrane transport, microtubule polymerization or depolymerization and positive regulation of cellular component biogenesis. In conclusion, maternal protein supplementation during mid-gestation modulates the expression of genes involved in important biological process related to myogenesis, lipogenesis, and muscle and adipose tissues metabolism. |
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Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestationPerfil do transcriptoma do músculo esquelético da progênie de matrizes suplementadas com proteína durante o meio da gestaçãoFetal programmingGene expressionMaternal nutritionMuscle metabolismProgramação fetalExpressão gênicaNutrição maternaMetabolismo muscularZootecniaMaternal undernutrition and overnutrition during gestation can cause different effects on muscle development and offspring performance. This study aimed to evaluate the differentially expressed genes (DEG), weighed genes co-expression networks (WGCNA), and their biological functions in skeletal muscle of offspring from dams supplemented or not with protein during mid-gestation. From 100 to 200 days of gestation, ten Tabapuã beef cows pregnant of male calves were assigned to one of two treatments: Control [(CON) - supply of basal diet achieving 5.5% of crude protein (CP); n = 6]; or Supplemented [(SUP) - basal diet plus a supplement with 40% of CP provided at the level of 3.5 g/kg of body weight; n = 4]. Muscle samples were collected from the progeny at the beginning of feedlot phase (260d of postnatal age) to RNA-seq, WGCNA and Gene Ontology (GO) enrichment analysis. A total of 310 DEG (q-value < 0.05) were identified for the effect of diet, being 187 and 123 genes down-regulated and up-regulated in the SUP diet, respectively. Within the SUP up-regulated genes, were genes related to insulin receptor signaling pathway (LOC107131843); apoptosis regulation (KRT18, KRT8 and KRT19); negative regulation of lipoprotein lipase activity (ANGPTL4) and potassium ion transmembrane transport (KCNH3). The ENSBTAG00000032057 gene, involved in the ATP synthesis coupled proton transport, were down-regulated in SUP diet. In WGCNA, within hub genes identified in the module negatively associated with diet were ANGPTL4 and ANKRD6 (associated with Wnt signaling pathway); whereas in the modules positively correlated was KLHL10 (homeostasis of number of cells within a tissue). The GO analysis showed that DEG were mainly enriched in potassium ion transmembrane transport, microtubule polymerization or depolymerization and positive regulation of cellular component biogenesis. In conclusion, maternal protein supplementation during mid-gestation modulates the expression of genes involved in important biological process related to myogenesis, lipogenesis, and muscle and adipose tissues metabolism.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)A subnutrição e supernutrição maternas durante a gestação podem causar diferentes efeitos no desenvolvimento muscular e no desempenho da progênie. Este estudo teve como objetivo avaliar os genes diferencialmente expressos (DEG), redes de co-expressão gênica (WGCNA) e suas funções biológicas no músculo esquelético da progênie de vacas suplementadas ou não com proteína durante o terço médio da gestação. De 100 a 200 dias de gestação, dez vacas Tabapuã prenhes de bezerros machos foram alocadas em um de dois tratamentos: Controle [(CON) - fornecimento de dieta basal atingindo 5,5% de proteína bruta (PB); n = 6]; ou Suplementado [(SUP) - dieta basal mais suplemento com 40% de PB fornecido ao nível de 3,5 g / kg de peso corporal; n = 4]. Amostras de tecido muscular foram coletadas da progênie no início da fase de confinamento (260d de vida pós-natal) para análise de RNA-seq, WGCNA e processos biológicos (GO terms) enriquecidos. Um total de 310 DEG (q-valor <0,05) foram identificados para o efeito da dieta, sendo 187 e 123 genes regulados negativamente e regulados positivamente na dieta SUP, respectivamente. Entre os genes mais expressos no grupo SUP, estavam genes relacionados à via de sinalização do receptor de insulina (LOC107131843); regulação da apoptose (KRT18, KRT8 e KRT19); regulação negativa da atividade da lipoproteína lipase (ANGPTL4) e transporte transmembrana de íons potássio (KCNH3). O gene ENSBTAG00000032057, envolvido na síntese de ATP acoplado ao transporte de prótons, foi regulado negativamente no grupo SUP. Na análise de WGCNA, entre os genes identificados no módulo negativamente associado à dieta, foram encontrados ANGPTL4 e ANKRD6 (associado à via de sinalização da Wnt); enquanto nos módulos relacionados positivamente à dieta, foi encontrado o gene KLHL10 (homeostase do número de células de um tecido). A análise dos GO terms mostrou que os DEG foram enriquecidos principalmente no transporte transmembrana de íons de potássio, polimerização ou despolimerização de microtúbulos e regulação positiva da biogênese de componentes celulares. Em conclusão, a suplementação materna com proteína durante o terço médio da gestação modula a expressão de genes envolvidos em importantes processos biológicos relacionados à miogênese, lipogênese e metabolismo dos tecidos muscular e adiposo.Universidade Federal de LavrasPrograma de Pós-Graduação em ZootecniaUFLAbrasilDepartamento de ZootecniaGionbelli, Mateus PiesDuarte, Marcio de SouzaLadeira, Márcio MachadoMeirelles, Sarah Laguna ConceiçãoDuarte, Marcio de SouzaSerão, Nicola Vergara LopesCarvalho, Elisa Barbosa de2021-11-18T17:23:56Z2021-11-18T17:23:56Z2021-11-182021-08-30info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfCARVALHO, E. B. de. Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation. 2021. 61 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021.http://repositorio.ufla.br/jspui/handle/1/48500enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLA2021-11-18T17:23:56Zoai:localhost:1/48500Repositório InstitucionalPUBhttp://repositorio.ufla.br/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2021-11-18T17:23:56Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)false |
dc.title.none.fl_str_mv |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation Perfil do transcriptoma do músculo esquelético da progênie de matrizes suplementadas com proteína durante o meio da gestação |
title |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
spellingShingle |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation Carvalho, Elisa Barbosa de Fetal programming Gene expression Maternal nutrition Muscle metabolism Programação fetal Expressão gênica Nutrição materna Metabolismo muscular Zootecnia |
title_short |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
title_full |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
title_fullStr |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
title_full_unstemmed |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
title_sort |
Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation |
author |
Carvalho, Elisa Barbosa de |
author_facet |
Carvalho, Elisa Barbosa de |
author_role |
author |
dc.contributor.none.fl_str_mv |
Gionbelli, Mateus Pies Duarte, Marcio de Souza Ladeira, Márcio Machado Meirelles, Sarah Laguna Conceição Duarte, Marcio de Souza Serão, Nicola Vergara Lopes |
dc.contributor.author.fl_str_mv |
Carvalho, Elisa Barbosa de |
dc.subject.por.fl_str_mv |
Fetal programming Gene expression Maternal nutrition Muscle metabolism Programação fetal Expressão gênica Nutrição materna Metabolismo muscular Zootecnia |
topic |
Fetal programming Gene expression Maternal nutrition Muscle metabolism Programação fetal Expressão gênica Nutrição materna Metabolismo muscular Zootecnia |
description |
Maternal undernutrition and overnutrition during gestation can cause different effects on muscle development and offspring performance. This study aimed to evaluate the differentially expressed genes (DEG), weighed genes co-expression networks (WGCNA), and their biological functions in skeletal muscle of offspring from dams supplemented or not with protein during mid-gestation. From 100 to 200 days of gestation, ten Tabapuã beef cows pregnant of male calves were assigned to one of two treatments: Control [(CON) - supply of basal diet achieving 5.5% of crude protein (CP); n = 6]; or Supplemented [(SUP) - basal diet plus a supplement with 40% of CP provided at the level of 3.5 g/kg of body weight; n = 4]. Muscle samples were collected from the progeny at the beginning of feedlot phase (260d of postnatal age) to RNA-seq, WGCNA and Gene Ontology (GO) enrichment analysis. A total of 310 DEG (q-value < 0.05) were identified for the effect of diet, being 187 and 123 genes down-regulated and up-regulated in the SUP diet, respectively. Within the SUP up-regulated genes, were genes related to insulin receptor signaling pathway (LOC107131843); apoptosis regulation (KRT18, KRT8 and KRT19); negative regulation of lipoprotein lipase activity (ANGPTL4) and potassium ion transmembrane transport (KCNH3). The ENSBTAG00000032057 gene, involved in the ATP synthesis coupled proton transport, were down-regulated in SUP diet. In WGCNA, within hub genes identified in the module negatively associated with diet were ANGPTL4 and ANKRD6 (associated with Wnt signaling pathway); whereas in the modules positively correlated was KLHL10 (homeostasis of number of cells within a tissue). The GO analysis showed that DEG were mainly enriched in potassium ion transmembrane transport, microtubule polymerization or depolymerization and positive regulation of cellular component biogenesis. In conclusion, maternal protein supplementation during mid-gestation modulates the expression of genes involved in important biological process related to myogenesis, lipogenesis, and muscle and adipose tissues metabolism. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-11-18T17:23:56Z 2021-11-18T17:23:56Z 2021-11-18 2021-08-30 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
format |
doctoralThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
CARVALHO, E. B. de. Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation. 2021. 61 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021. http://repositorio.ufla.br/jspui/handle/1/48500 |
identifier_str_mv |
CARVALHO, E. B. de. Transcriptome profile in the skeletal muscle of progeny from dams protein-supplemented during mid-gestation. 2021. 61 p. Tese (Doutorado em Zootecnia) – Universidade Federal de Lavras, Lavras, 2021. |
url |
http://repositorio.ufla.br/jspui/handle/1/48500 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Lavras Programa de Pós-Graduação em Zootecnia UFLA brasil Departamento de Zootecnia |
publisher.none.fl_str_mv |
Universidade Federal de Lavras Programa de Pós-Graduação em Zootecnia UFLA brasil Departamento de Zootecnia |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFLA instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
instname_str |
Universidade Federal de Lavras (UFLA) |
instacron_str |
UFLA |
institution |
UFLA |
reponame_str |
Repositório Institucional da UFLA |
collection |
Repositório Institucional da UFLA |
repository.name.fl_str_mv |
Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA) |
repository.mail.fl_str_mv |
nivaldo@ufla.br || repositorio.biblioteca@ufla.br |
_version_ |
1815439183716548608 |