Seleção diversificadora em Corynebacterium Pseudotuberculosis
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Repositório Institucional da UFMG |
Texto Completo: | http://hdl.handle.net/1843/BUOS-B5SG5J |
Resumo: | Corynebacterium pseudotuberculosis is a Gram-positive, facultative intracellular bacterium with veterinary and medical importance and a global distribution. It infects a variety of mammals, such as sheep, goats, horses, buffalo and humans, and causes economic losses in animal production. Biovar Equi is nitrate positive and has horse and buffalo as exclusive hosts. Biovar Ovis is nitrate negative and has preference for sheep and goats. Antibiotic treatments have reduced efficiency due to the protection provided by the abscesses and current vaccines have different protection efficiency in different hosts. The analysis of positive (diversifying) selection is useful to identify adaptive mutations in this pathogen and to reveal mechanisms of host adaptation and probable targets for control methods. A genome-scale positive selection analysis was performed in C. pseudotuberculosis using 29 strains from different hosts, biovars and countries. The phylogenomic analysis suggested that Ovis diverged recently from Equi biovar, probably after specialization for a new host range. Positive selection was detected in 11 genes, most involved in host colonization processes. The results provide information about the adaptive mutations related to the species lyfestile and suggest a probable drug target. |
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Seleção diversificadora em Corynebacterium PseudotuberculosisBioinformáticaBioinformáticaCorynebacterium pseudotuberculosis is a Gram-positive, facultative intracellular bacterium with veterinary and medical importance and a global distribution. It infects a variety of mammals, such as sheep, goats, horses, buffalo and humans, and causes economic losses in animal production. Biovar Equi is nitrate positive and has horse and buffalo as exclusive hosts. Biovar Ovis is nitrate negative and has preference for sheep and goats. Antibiotic treatments have reduced efficiency due to the protection provided by the abscesses and current vaccines have different protection efficiency in different hosts. The analysis of positive (diversifying) selection is useful to identify adaptive mutations in this pathogen and to reveal mechanisms of host adaptation and probable targets for control methods. A genome-scale positive selection analysis was performed in C. pseudotuberculosis using 29 strains from different hosts, biovars and countries. The phylogenomic analysis suggested that Ovis diverged recently from Equi biovar, probably after specialization for a new host range. Positive selection was detected in 11 genes, most involved in host colonization processes. The results provide information about the adaptive mutations related to the species lyfestile and suggest a probable drug target.Corynebacterium pseudotuberculosis é uma bactéria Gram-positiva e intracelular facultativa de importância médica e veterinária, e distribuição global. A espécie infecta uma variedade de mamíferos, como ovelhas, cabras, cavalos, búfalos e humanos, e causa perdas econômicas na produção animal. O biovar Equi é nitrato positivo e tem o cavalo e o búfalo como hospedeiros exclusivos. O biovar Ovis é nitrato negativo e tem preferência por ovinos e caprinos. Os tratamentos com antibióticos vêm perdendo eficácia, devido à proteção proporcionada pelos abscessos, e as vacinas atuais apresentam eficiência de proteção diferente em diferentes hospedeiros. A análise de seleção positiva (diversificadora) é útil para identificar mutações adaptativas neste patógeno e revelar mecanismos de adaptação ao hospedeiro e prováveis alvos para métodos de controle. Uma análise de seleção positiva em escala genômica foi realizada em C. pseudotuberculosis usando 29 linhagens de diferentes hospedeiros, biovares e países. A análise filogenômica sugeriu que Ovis divergiu a partir do biovar Equi, provavelmente depois da especialização para um subconjunto de hospedeiros. A seleção positiva foi detectada em 11 genes, a maior parte envolvida em processos de colonização de hospedeiro. Os resultados fornecem informações sobre as mutações adaptativas relacionadas ao estilo de vida da espécie e sugerem um provável alvo de droga.Universidade Federal de Minas GeraisUFMGVasco Ariston de Carvalho AzevedoMarcus Vinicius Canário VianaAristoteles Goes NetoAnne Cybelle PintoRodrigo Bentes KatoAlessandra Lima da Silva2019-08-09T19:18:43Z2019-08-09T19:18:43Z2018-07-30info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/1843/BUOS-B5SG5Jinfo:eu-repo/semantics/openAccessporreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMG2019-11-14T08:44:33Zoai:repositorio.ufmg.br:1843/BUOS-B5SG5JRepositório InstitucionalPUBhttps://repositorio.ufmg.br/oairepositorio@ufmg.bropendoar:2019-11-14T08:44:33Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false |
dc.title.none.fl_str_mv |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
title |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
spellingShingle |
Seleção diversificadora em Corynebacterium Pseudotuberculosis Alessandra Lima da Silva Bioinformática Bioinformática |
title_short |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
title_full |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
title_fullStr |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
title_full_unstemmed |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
title_sort |
Seleção diversificadora em Corynebacterium Pseudotuberculosis |
author |
Alessandra Lima da Silva |
author_facet |
Alessandra Lima da Silva |
author_role |
author |
dc.contributor.none.fl_str_mv |
Vasco Ariston de Carvalho Azevedo Marcus Vinicius Canário Viana Aristoteles Goes Neto Anne Cybelle Pinto Rodrigo Bentes Kato |
dc.contributor.author.fl_str_mv |
Alessandra Lima da Silva |
dc.subject.por.fl_str_mv |
Bioinformática Bioinformática |
topic |
Bioinformática Bioinformática |
description |
Corynebacterium pseudotuberculosis is a Gram-positive, facultative intracellular bacterium with veterinary and medical importance and a global distribution. It infects a variety of mammals, such as sheep, goats, horses, buffalo and humans, and causes economic losses in animal production. Biovar Equi is nitrate positive and has horse and buffalo as exclusive hosts. Biovar Ovis is nitrate negative and has preference for sheep and goats. Antibiotic treatments have reduced efficiency due to the protection provided by the abscesses and current vaccines have different protection efficiency in different hosts. The analysis of positive (diversifying) selection is useful to identify adaptive mutations in this pathogen and to reveal mechanisms of host adaptation and probable targets for control methods. A genome-scale positive selection analysis was performed in C. pseudotuberculosis using 29 strains from different hosts, biovars and countries. The phylogenomic analysis suggested that Ovis diverged recently from Equi biovar, probably after specialization for a new host range. Positive selection was detected in 11 genes, most involved in host colonization processes. The results provide information about the adaptive mutations related to the species lyfestile and suggest a probable drug target. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-07-30 2019-08-09T19:18:43Z 2019-08-09T19:18:43Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1843/BUOS-B5SG5J |
url |
http://hdl.handle.net/1843/BUOS-B5SG5J |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Minas Gerais UFMG |
publisher.none.fl_str_mv |
Universidade Federal de Minas Gerais UFMG |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFMG instname:Universidade Federal de Minas Gerais (UFMG) instacron:UFMG |
instname_str |
Universidade Federal de Minas Gerais (UFMG) |
instacron_str |
UFMG |
institution |
UFMG |
reponame_str |
Repositório Institucional da UFMG |
collection |
Repositório Institucional da UFMG |
repository.name.fl_str_mv |
Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG) |
repository.mail.fl_str_mv |
repositorio@ufmg.br |
_version_ |
1816829638059491328 |