Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae

Detalhes bibliográficos
Autor(a) principal: Raiana Silva Menezes de Santana
Data de Publicação: 2013
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFMG
Texto Completo: http://hdl.handle.net/1843/BUBD-9GAGPB
Resumo: Bacteria are ubiquitous, inhabiting different environments, including other living beings. Composition and diversity may be affected by the health or disease conditions of the host organism. In this scenario, this work characterized the endophytic bacterial communities of Baccharis dracucunlifolia endorhizosphere affected by the gall insect Baccharopelma dracuncufoliae and leaves of male plants, with and without B. dracuncufoliae gall, from the partial sequencing of 16S rRNA gene using different high throughput platforms: Ion Torrent and Illumina HiSeq 2000. Furthermore, we compared the composition of these communities, using restriction analysis of the amplified rDNA (ARDRA). Phylogenetic analysis of the microbiota of endorrizosfera showed a diverse and complex community, represented by 17 phyla. It is noteworthy that 50 % of the sequences of 16S rDNA were not classified in the phylum level. Proteobacteria predominated (28.7 %), followed by the phyla Actinobacteria (11.5%) and Acidobacteria (2.6%). The compositions of the bacterial communities from the leaves of healthy and affected plants were significantly different (p < 0.05). In both libraries, Proteobacteria was the most abundant phylum. Other phyla found were Actinobacteria, Firmicutes, Bacteroidetes and Chorobi. The endophytic microbiota of B. dracuncufolia harbour metabolically diverse bacteria with potential to degrade wide variety of compounds, which is expected when studying such a rich plant secondary metabolites as B. dracunculifolia. Unlike Illumina HiSeq 2000 sequencing, the ARDRA profile revealed no differences between male healthy and gall plants, and female healthy and gall plants. The results of this study indicate that B. dracunculifolia houses a diverse and complex community, and that the presence of galling insect interferes in their bacterial composition.
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spelling Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliaeGenéticaBaccharisBacterias endofiticasGenética bacterianaPlataformas de sequenciamento de nova geraçãoBacteria are ubiquitous, inhabiting different environments, including other living beings. Composition and diversity may be affected by the health or disease conditions of the host organism. In this scenario, this work characterized the endophytic bacterial communities of Baccharis dracucunlifolia endorhizosphere affected by the gall insect Baccharopelma dracuncufoliae and leaves of male plants, with and without B. dracuncufoliae gall, from the partial sequencing of 16S rRNA gene using different high throughput platforms: Ion Torrent and Illumina HiSeq 2000. Furthermore, we compared the composition of these communities, using restriction analysis of the amplified rDNA (ARDRA). Phylogenetic analysis of the microbiota of endorrizosfera showed a diverse and complex community, represented by 17 phyla. It is noteworthy that 50 % of the sequences of 16S rDNA were not classified in the phylum level. Proteobacteria predominated (28.7 %), followed by the phyla Actinobacteria (11.5%) and Acidobacteria (2.6%). The compositions of the bacterial communities from the leaves of healthy and affected plants were significantly different (p < 0.05). In both libraries, Proteobacteria was the most abundant phylum. Other phyla found were Actinobacteria, Firmicutes, Bacteroidetes and Chorobi. The endophytic microbiota of B. dracuncufolia harbour metabolically diverse bacteria with potential to degrade wide variety of compounds, which is expected when studying such a rich plant secondary metabolites as B. dracunculifolia. Unlike Illumina HiSeq 2000 sequencing, the ARDRA profile revealed no differences between male healthy and gall plants, and female healthy and gall plants. The results of this study indicate that B. dracunculifolia houses a diverse and complex community, and that the presence of galling insect interferes in their bacterial composition.Bactérias são ubíquas, habitando os mais diversos ambientes, inclusive outros seres vivos. Sua composição e diversidade pode ser afetada pela condição de saúde ou doença do organismo hospedeiro. Neste cenário, este trabalho caracterizou as comunidades bacterianas endofíticas da endorrizosfera de Baccharis dracucunlifolia afetada pela galha do inseto Baccharopelma dracuncufoliae, bem como de folhas de plantas masculinas, com e sem galha de B. dracuncufoliae, a partir do sequenciamento parcial do gene de rRNA 16S utilizando diferentes plataformas de alta processividade: Ion Torrent e Illumina Hiseq 2000. Além disso, comparou-se a composição destas comunidades, usando análise de restrição do rDNA amplificado (ARDRA). A análise filogenética da microbiota da endorrizosfera mostrou uma comunidade diversa e complexa, representada por 17 filos. Destaca-se que 50% das sequências de rDNA 16S não foram classificadas no nível de filo. Proteobacteria predominou (28,7%), seguido pelos filos Actinobacteria (11,5%) e Acidobacteria (2,6%). As composições das comunidades bacterianas das folhas de plantas masculinas sadias e atacadas foram significativamente diferentes (p<0,05). Em ambas bibliotecas, Proteobacteria foi o filo mais abundante. Outros filos encontrados foram Actinobacteria, Firmicutes, Bacteroidetes e Chorobi. A microbiota endofítica de B. dracuncufolia abriga bactérias metabolicamente diversas, com potencial para degradar grande variedade de compostos. Ao contrário do sequenciamento Illumina Hiseq 2000, o perfil ARDRA não revelou diferenças entre plantas masculinas sadia, com galha e plantas femininas sadia e com galha. Os resultados deste estudo indicam que B. dracunculifolia abriga uma comunidade diversa e complexa, e que a presença do inseto galhador interfere na sua composição bacteriana.Universidade Federal de Minas GeraisUFMGAndrea Maria Amaral NascimentoEdmar Chartone de SouzaRaiana Silva Menezes de Santana2019-08-09T19:59:18Z2019-08-09T19:59:18Z2013-12-13info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/1843/BUBD-9GAGPBinfo:eu-repo/semantics/openAccessporreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMG2019-11-14T13:46:38Zoai:repositorio.ufmg.br:1843/BUBD-9GAGPBRepositório InstitucionalPUBhttps://repositorio.ufmg.br/oairepositorio@ufmg.bropendoar:2019-11-14T13:46:38Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false
dc.title.none.fl_str_mv Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
title Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
spellingShingle Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
Raiana Silva Menezes de Santana
Genética
Baccharis
Bacterias endofiticas
Genética bacteriana
Plataformas de sequenciamento de nova geração
title_short Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
title_full Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
title_fullStr Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
title_full_unstemmed Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
title_sort Caracterização da comunidade bacteriana de Baccharis dracunculifolia, com e sem galha causada por Baccharopelma dracuncufoliae
author Raiana Silva Menezes de Santana
author_facet Raiana Silva Menezes de Santana
author_role author
dc.contributor.none.fl_str_mv Andrea Maria Amaral Nascimento
Edmar Chartone de Souza
dc.contributor.author.fl_str_mv Raiana Silva Menezes de Santana
dc.subject.por.fl_str_mv Genética
Baccharis
Bacterias endofiticas
Genética bacteriana
Plataformas de sequenciamento de nova geração
topic Genética
Baccharis
Bacterias endofiticas
Genética bacteriana
Plataformas de sequenciamento de nova geração
description Bacteria are ubiquitous, inhabiting different environments, including other living beings. Composition and diversity may be affected by the health or disease conditions of the host organism. In this scenario, this work characterized the endophytic bacterial communities of Baccharis dracucunlifolia endorhizosphere affected by the gall insect Baccharopelma dracuncufoliae and leaves of male plants, with and without B. dracuncufoliae gall, from the partial sequencing of 16S rRNA gene using different high throughput platforms: Ion Torrent and Illumina HiSeq 2000. Furthermore, we compared the composition of these communities, using restriction analysis of the amplified rDNA (ARDRA). Phylogenetic analysis of the microbiota of endorrizosfera showed a diverse and complex community, represented by 17 phyla. It is noteworthy that 50 % of the sequences of 16S rDNA were not classified in the phylum level. Proteobacteria predominated (28.7 %), followed by the phyla Actinobacteria (11.5%) and Acidobacteria (2.6%). The compositions of the bacterial communities from the leaves of healthy and affected plants were significantly different (p < 0.05). In both libraries, Proteobacteria was the most abundant phylum. Other phyla found were Actinobacteria, Firmicutes, Bacteroidetes and Chorobi. The endophytic microbiota of B. dracuncufolia harbour metabolically diverse bacteria with potential to degrade wide variety of compounds, which is expected when studying such a rich plant secondary metabolites as B. dracunculifolia. Unlike Illumina HiSeq 2000 sequencing, the ARDRA profile revealed no differences between male healthy and gall plants, and female healthy and gall plants. The results of this study indicate that B. dracunculifolia houses a diverse and complex community, and that the presence of galling insect interferes in their bacterial composition.
publishDate 2013
dc.date.none.fl_str_mv 2013-12-13
2019-08-09T19:59:18Z
2019-08-09T19:59:18Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1843/BUBD-9GAGPB
url http://hdl.handle.net/1843/BUBD-9GAGPB
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Minas Gerais
UFMG
publisher.none.fl_str_mv Universidade Federal de Minas Gerais
UFMG
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFMG
instname:Universidade Federal de Minas Gerais (UFMG)
instacron:UFMG
instname_str Universidade Federal de Minas Gerais (UFMG)
instacron_str UFMG
institution UFMG
reponame_str Repositório Institucional da UFMG
collection Repositório Institucional da UFMG
repository.name.fl_str_mv Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)
repository.mail.fl_str_mv repositorio@ufmg.br
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