Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.

Detalhes bibliográficos
Autor(a) principal: Brito, Rory Cristiane Fortes de
Data de Publicação: 2017
Outros Autores: Guimarães, Frederico Gonçalves, Velloso, João Paulo Linhares, Oliveira, Rodrigo Corrêa de, Ruiz, Jeronimo Conceição, Reis, Alexandre Barbosa, Resende, Daniela de Melo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFOP
Texto Completo: http://www.repositorio.ufop.br/handle/123456789/8576
https://doi.org/10.3390/ijms18020371
Resumo: Leishmaniasis is a wide-spectrum disease caused by parasites from Leishmania genus. There is no human vaccine available and it is considered by many studies as apotential effective tool for disease control. To discover novel antigens, computational programs have been used in reverse vaccinology strategies. In this work, we developed a validation antigen approach that integrates prediction of B and T cell epitopes, analysis of Protein-Protein Interaction (PPI) networks and metabolic pathways. We selected twenty candidate proteins from Leishmania tested in murine model, with experimental outcome published in the literature. The predictions for CD4+ and CD8+ T cell epitopes were correlated with protection in experimental outcomes. We also mapped immunogenic proteins on PPI networks in order to find Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways associated with them. Our results suggest that non-protective antigens have lowest frequency of predicted T CD4+ and T CD8+ epitopes, compared with protective ones. T CD4+ and T CD8+ cells are more related to leishmaniasis protection in experimental outcomes than B cell predicted epitopes. Considering KEGG analysis, the proteins considered protective are connected to nodes with few pathways, including those associated with ribosome biosynthesis and purine metabolism.
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spelling Brito, Rory Cristiane Fortes deGuimarães, Frederico GonçalvesVelloso, João Paulo LinharesOliveira, Rodrigo Corrêa deRuiz, Jeronimo ConceiçãoReis, Alexandre BarbosaResende, Daniela de Melo2017-08-30T16:55:51Z2017-08-30T16:55:51Z2017BRITO, R. C. F. et al. Immunoinformatics features linked to leishmania vaccine development: data integration of experimental and in silico studies. International Journal of Molecular Sciences, v. 18, p. 371, 2017. Disponível em: <http://www.mdpi.com/1422-0067/18/2/371>. Acesso em: 29 ago. 2017.1661-6596http://www.repositorio.ufop.br/handle/123456789/8576https://doi.org/10.3390/ijms18020371Leishmaniasis is a wide-spectrum disease caused by parasites from Leishmania genus. There is no human vaccine available and it is considered by many studies as apotential effective tool for disease control. To discover novel antigens, computational programs have been used in reverse vaccinology strategies. In this work, we developed a validation antigen approach that integrates prediction of B and T cell epitopes, analysis of Protein-Protein Interaction (PPI) networks and metabolic pathways. We selected twenty candidate proteins from Leishmania tested in murine model, with experimental outcome published in the literature. The predictions for CD4+ and CD8+ T cell epitopes were correlated with protection in experimental outcomes. We also mapped immunogenic proteins on PPI networks in order to find Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways associated with them. Our results suggest that non-protective antigens have lowest frequency of predicted T CD4+ and T CD8+ epitopes, compared with protective ones. T CD4+ and T CD8+ cells are more related to leishmaniasis protection in experimental outcomes than B cell predicted epitopes. Considering KEGG analysis, the proteins considered protective are connected to nodes with few pathways, including those associated with ribosome biosynthesis and purine metabolism.O periódico International Journal of Molecular Sciences permite o arquivamento da versão PDF do editor em repositórios institucionais. Fonte: Sherpa/Romeo <http://sherpa.ac.uk/romeo/search.php?issn=1661-6596>. Acesso em: 01 dez. 2019.info:eu-repo/semantics/openAccessEpitope predictionPathwaysReverse vaccinologyLeishmaniasisImmunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleengreponame:Repositório Institucional da UFOPinstname:Universidade Federal de Ouro Preto (UFOP)instacron:UFOPLICENSElicense.txtlicense.txttext/plain; charset=utf-8924http://www.repositorio.ufop.br/bitstream/123456789/8576/2/license.txt62604f8d955274beb56c80ce1ee5dcaeMD52ORIGINALARTIGO_ImmunoinformaticsFeaturesLinked.pdfARTIGO_ImmunoinformaticsFeaturesLinked.pdfapplication/pdf2556856http://www.repositorio.ufop.br/bitstream/123456789/8576/1/ARTIGO_ImmunoinformaticsFeaturesLinked.pdf0436fa831bf5b5e2ae03338800248a1bMD51123456789/85762020-01-22 10:23:17.84oai:localhost: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ório InstitucionalPUBhttp://www.repositorio.ufop.br/oai/requestrepositorio@ufop.edu.bropendoar:32332020-01-22T15:23:17Repositório Institucional da UFOP - Universidade Federal de Ouro Preto (UFOP)false
dc.title.pt_BR.fl_str_mv Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
title Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
spellingShingle Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
Brito, Rory Cristiane Fortes de
Epitope prediction
Pathways
Reverse vaccinology
Leishmaniasis
title_short Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
title_full Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
title_fullStr Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
title_full_unstemmed Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
title_sort Immunoinformatics features linked to leishmania vaccine development : data integration of experimental and in silico studies.
author Brito, Rory Cristiane Fortes de
author_facet Brito, Rory Cristiane Fortes de
Guimarães, Frederico Gonçalves
Velloso, João Paulo Linhares
Oliveira, Rodrigo Corrêa de
Ruiz, Jeronimo Conceição
Reis, Alexandre Barbosa
Resende, Daniela de Melo
author_role author
author2 Guimarães, Frederico Gonçalves
Velloso, João Paulo Linhares
Oliveira, Rodrigo Corrêa de
Ruiz, Jeronimo Conceição
Reis, Alexandre Barbosa
Resende, Daniela de Melo
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Brito, Rory Cristiane Fortes de
Guimarães, Frederico Gonçalves
Velloso, João Paulo Linhares
Oliveira, Rodrigo Corrêa de
Ruiz, Jeronimo Conceição
Reis, Alexandre Barbosa
Resende, Daniela de Melo
dc.subject.por.fl_str_mv Epitope prediction
Pathways
Reverse vaccinology
Leishmaniasis
topic Epitope prediction
Pathways
Reverse vaccinology
Leishmaniasis
description Leishmaniasis is a wide-spectrum disease caused by parasites from Leishmania genus. There is no human vaccine available and it is considered by many studies as apotential effective tool for disease control. To discover novel antigens, computational programs have been used in reverse vaccinology strategies. In this work, we developed a validation antigen approach that integrates prediction of B and T cell epitopes, analysis of Protein-Protein Interaction (PPI) networks and metabolic pathways. We selected twenty candidate proteins from Leishmania tested in murine model, with experimental outcome published in the literature. The predictions for CD4+ and CD8+ T cell epitopes were correlated with protection in experimental outcomes. We also mapped immunogenic proteins on PPI networks in order to find Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways associated with them. Our results suggest that non-protective antigens have lowest frequency of predicted T CD4+ and T CD8+ epitopes, compared with protective ones. T CD4+ and T CD8+ cells are more related to leishmaniasis protection in experimental outcomes than B cell predicted epitopes. Considering KEGG analysis, the proteins considered protective are connected to nodes with few pathways, including those associated with ribosome biosynthesis and purine metabolism.
publishDate 2017
dc.date.accessioned.fl_str_mv 2017-08-30T16:55:51Z
dc.date.available.fl_str_mv 2017-08-30T16:55:51Z
dc.date.issued.fl_str_mv 2017
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dc.identifier.citation.fl_str_mv BRITO, R. C. F. et al. Immunoinformatics features linked to leishmania vaccine development: data integration of experimental and in silico studies. International Journal of Molecular Sciences, v. 18, p. 371, 2017. Disponível em: <http://www.mdpi.com/1422-0067/18/2/371>. Acesso em: 29 ago. 2017.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufop.br/handle/123456789/8576
dc.identifier.issn.none.fl_str_mv 1661-6596
dc.identifier.doi.none.fl_str_mv https://doi.org/10.3390/ijms18020371
identifier_str_mv BRITO, R. C. F. et al. Immunoinformatics features linked to leishmania vaccine development: data integration of experimental and in silico studies. International Journal of Molecular Sciences, v. 18, p. 371, 2017. Disponível em: <http://www.mdpi.com/1422-0067/18/2/371>. Acesso em: 29 ago. 2017.
1661-6596
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https://doi.org/10.3390/ijms18020371
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