Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.

Detalhes bibliográficos
Autor(a) principal: Caneschi, Washington Luiz
Data de Publicação: 2019
Outros Autores: Sanchez, Angelica Bianchini, Felestrino, Érica Barbosa, Lemes, Camila Gracyelle de Carvalho, Cordeiro, Isabella Ferreira, Fonseca, Natasha Peixoto, Villa, Morghana Marina, Vieira, Izadora Tabuso, Moraes, Lauro Ângelo Gonçalves de, Assis, Renata de Almeida Barbosa, Carmo, Flávio Fonseca do, Kamino, Luciana Hiromi Yoshino, Silva, Robson Soares, Ferro, Jesus Aparecido, Ferro, Maria Inês Tiraboschi, Ferreira, Rafael Marini, Santos, Vera Lúcia, Silva, Ubiana de Cássia Mourão, Almeida Junior, Nalvo Franco de, Varani, Alessandro de Mello, Garcia, Camila Carrião Machado, Setubal, João Carlos, Moreira, Leandro Marcio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFOP
Texto Completo: http://www.repositorio.ufop.br/handle/123456789/12006
https://doi.org/10.1038/s41598-019-54601-4
Resumo: Serratia liquefaciens strain FG3 (SlFG3), isolated from the flower of Stachytarpheta glabra in the Brazilian ferruginous fields, has distinctive genomic, adaptive, and biotechnological potential. Herein, using a combination of genomics and molecular approaches, we unlocked the evolution of the adaptive traits acquired by S1FG3, which exhibits the second largest chromosome containing the largest conjugative plasmids described for Serratia. Comparative analysis revealed the presence of 18 genomic islands and 311 unique protein families involved in distinct adaptive features. S1FG3 has a diversified repertoire of genes associated with Nonribosomal peptides (NRPs/PKS), a complete and functional cluster related to cellulose synthesis, and an extensive and functional repertoire of oxidative metabolism genes. In addition, S1FG3 possesses a complete pathway related to protocatecuate and chloroaromatic degradation, and a complete repertoire of genes related to DNA repair and protection that includes mechanisms related to UV light tolerance, redox process resistance, and a laterally acquired capacity to protect DNA using phosphorothioation. These findings summarize that SlFG3 is well-adapted to different biotic and abiotic stress situations imposed by extreme conditions associated with ferruginous fields, unlocking the impact of the lateral gene transfer to adjust the genome for extreme environments, and providing insight into the evolution of prokaryotes.
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spelling Caneschi, Washington LuizSanchez, Angelica BianchiniFelestrino, Érica BarbosaLemes, Camila Gracyelle de CarvalhoCordeiro, Isabella FerreiraFonseca, Natasha PeixotoVilla, Morghana MarinaVieira, Izadora TabusoMoraes, Lauro Ângelo Gonçalves deAssis, Renata de Almeida BarbosaCarmo, Flávio Fonseca doKamino, Luciana Hiromi YoshinoSilva, Robson SoaresFerro, Jesus AparecidoFerro, Maria Inês TiraboschiFerreira, Rafael MariniSantos, Vera LúciaSilva, Ubiana de Cássia MourãoAlmeida Junior, Nalvo Franco deVarani, Alessandro de MelloGarcia, Camila Carrião MachadoSetubal, João CarlosMoreira, Leandro Marcio2020-03-24T17:10:51Z2020-03-24T17:10:51Z2019CANESCHI, W. L. et al. Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments. Scientific Reports, v. 9, p. 18006, nov. 2019. Disponível em: <https://www.nature.com/articles/s41598-019-54601-4>. Acesso em: 10 fev. 2020.2045-2322http://www.repositorio.ufop.br/handle/123456789/12006https://doi.org/10.1038/s41598-019-54601-4Serratia liquefaciens strain FG3 (SlFG3), isolated from the flower of Stachytarpheta glabra in the Brazilian ferruginous fields, has distinctive genomic, adaptive, and biotechnological potential. Herein, using a combination of genomics and molecular approaches, we unlocked the evolution of the adaptive traits acquired by S1FG3, which exhibits the second largest chromosome containing the largest conjugative plasmids described for Serratia. Comparative analysis revealed the presence of 18 genomic islands and 311 unique protein families involved in distinct adaptive features. S1FG3 has a diversified repertoire of genes associated with Nonribosomal peptides (NRPs/PKS), a complete and functional cluster related to cellulose synthesis, and an extensive and functional repertoire of oxidative metabolism genes. In addition, S1FG3 possesses a complete pathway related to protocatecuate and chloroaromatic degradation, and a complete repertoire of genes related to DNA repair and protection that includes mechanisms related to UV light tolerance, redox process resistance, and a laterally acquired capacity to protect DNA using phosphorothioation. These findings summarize that SlFG3 is well-adapted to different biotic and abiotic stress situations imposed by extreme conditions associated with ferruginous fields, unlocking the impact of the lateral gene transfer to adjust the genome for extreme environments, and providing insight into the evolution of prokaryotes.This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Te images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Fonte: o próprio artigo.info:eu-repo/semantics/openAccessSerratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleengreponame:Repositório Institucional da UFOPinstname:Universidade Federal de Ouro Preto (UFOP)instacron:UFOPLICENSElicense.txtlicense.txttext/plain; charset=utf-8924http://www.repositorio.ufop.br/bitstream/123456789/12006/2/license.txt62604f8d955274beb56c80ce1ee5dcaeMD52ORIGINALARTIGO_SerratiaLiquefaciensFG3.pdfARTIGO_SerratiaLiquefaciensFG3.pdfapplication/pdf9372907http://www.repositorio.ufop.br/bitstream/123456789/12006/1/ARTIGO_SerratiaLiquefaciensFG3.pdf744b9e8936a1cb0d8d933be494767c79MD51123456789/120062020-03-24 13:10:51.973oai:localhost: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ório InstitucionalPUBhttp://www.repositorio.ufop.br/oai/requestrepositorio@ufop.edu.bropendoar:32332020-03-24T17:10:51Repositório Institucional da UFOP - Universidade Federal de Ouro Preto (UFOP)false
dc.title.pt_BR.fl_str_mv Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
title Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
spellingShingle Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
Caneschi, Washington Luiz
title_short Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
title_full Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
title_fullStr Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
title_full_unstemmed Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
title_sort Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.
author Caneschi, Washington Luiz
author_facet Caneschi, Washington Luiz
Sanchez, Angelica Bianchini
Felestrino, Érica Barbosa
Lemes, Camila Gracyelle de Carvalho
Cordeiro, Isabella Ferreira
Fonseca, Natasha Peixoto
Villa, Morghana Marina
Vieira, Izadora Tabuso
Moraes, Lauro Ângelo Gonçalves de
Assis, Renata de Almeida Barbosa
Carmo, Flávio Fonseca do
Kamino, Luciana Hiromi Yoshino
Silva, Robson Soares
Ferro, Jesus Aparecido
Ferro, Maria Inês Tiraboschi
Ferreira, Rafael Marini
Santos, Vera Lúcia
Silva, Ubiana de Cássia Mourão
Almeida Junior, Nalvo Franco de
Varani, Alessandro de Mello
Garcia, Camila Carrião Machado
Setubal, João Carlos
Moreira, Leandro Marcio
author_role author
author2 Sanchez, Angelica Bianchini
Felestrino, Érica Barbosa
Lemes, Camila Gracyelle de Carvalho
Cordeiro, Isabella Ferreira
Fonseca, Natasha Peixoto
Villa, Morghana Marina
Vieira, Izadora Tabuso
Moraes, Lauro Ângelo Gonçalves de
Assis, Renata de Almeida Barbosa
Carmo, Flávio Fonseca do
Kamino, Luciana Hiromi Yoshino
Silva, Robson Soares
Ferro, Jesus Aparecido
Ferro, Maria Inês Tiraboschi
Ferreira, Rafael Marini
Santos, Vera Lúcia
Silva, Ubiana de Cássia Mourão
Almeida Junior, Nalvo Franco de
Varani, Alessandro de Mello
Garcia, Camila Carrião Machado
Setubal, João Carlos
Moreira, Leandro Marcio
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Caneschi, Washington Luiz
Sanchez, Angelica Bianchini
Felestrino, Érica Barbosa
Lemes, Camila Gracyelle de Carvalho
Cordeiro, Isabella Ferreira
Fonseca, Natasha Peixoto
Villa, Morghana Marina
Vieira, Izadora Tabuso
Moraes, Lauro Ângelo Gonçalves de
Assis, Renata de Almeida Barbosa
Carmo, Flávio Fonseca do
Kamino, Luciana Hiromi Yoshino
Silva, Robson Soares
Ferro, Jesus Aparecido
Ferro, Maria Inês Tiraboschi
Ferreira, Rafael Marini
Santos, Vera Lúcia
Silva, Ubiana de Cássia Mourão
Almeida Junior, Nalvo Franco de
Varani, Alessandro de Mello
Garcia, Camila Carrião Machado
Setubal, João Carlos
Moreira, Leandro Marcio
description Serratia liquefaciens strain FG3 (SlFG3), isolated from the flower of Stachytarpheta glabra in the Brazilian ferruginous fields, has distinctive genomic, adaptive, and biotechnological potential. Herein, using a combination of genomics and molecular approaches, we unlocked the evolution of the adaptive traits acquired by S1FG3, which exhibits the second largest chromosome containing the largest conjugative plasmids described for Serratia. Comparative analysis revealed the presence of 18 genomic islands and 311 unique protein families involved in distinct adaptive features. S1FG3 has a diversified repertoire of genes associated with Nonribosomal peptides (NRPs/PKS), a complete and functional cluster related to cellulose synthesis, and an extensive and functional repertoire of oxidative metabolism genes. In addition, S1FG3 possesses a complete pathway related to protocatecuate and chloroaromatic degradation, and a complete repertoire of genes related to DNA repair and protection that includes mechanisms related to UV light tolerance, redox process resistance, and a laterally acquired capacity to protect DNA using phosphorothioation. These findings summarize that SlFG3 is well-adapted to different biotic and abiotic stress situations imposed by extreme conditions associated with ferruginous fields, unlocking the impact of the lateral gene transfer to adjust the genome for extreme environments, and providing insight into the evolution of prokaryotes.
publishDate 2019
dc.date.issued.fl_str_mv 2019
dc.date.accessioned.fl_str_mv 2020-03-24T17:10:51Z
dc.date.available.fl_str_mv 2020-03-24T17:10:51Z
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dc.identifier.citation.fl_str_mv CANESCHI, W. L. et al. Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments. Scientific Reports, v. 9, p. 18006, nov. 2019. Disponível em: <https://www.nature.com/articles/s41598-019-54601-4>. Acesso em: 10 fev. 2020.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufop.br/handle/123456789/12006
dc.identifier.issn.none.fl_str_mv 2045-2322
dc.identifier.doi.pt_BR.fl_str_mv https://doi.org/10.1038/s41598-019-54601-4
identifier_str_mv CANESCHI, W. L. et al. Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments. Scientific Reports, v. 9, p. 18006, nov. 2019. Disponível em: <https://www.nature.com/articles/s41598-019-54601-4>. Acesso em: 10 fev. 2020.
2045-2322
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