The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains

Detalhes bibliográficos
Autor(a) principal: SOARES, Siomar de Castro
Data de Publicação: 2013
Outros Autores: SILVA, Artur Luiz da Costa da, TROST, Eva, BLOM, Jochen, RAMOS, Rommel Thiago Juca, CARNEIRO, Adriana Ribeiro, ALI, Amjad, SANTOS, Anderson Rodrigues dos, GOMIDE, Anne Cybelle Pinto, DINIZ, Carlos Augusto Almeida, BARBOSA, Eudes Guilherme Vieira, DORELLA, Fernanda Alves, ABURJAILE, Flavia Figueira, ROCHA, Flávia de Souza, NASCIMENTO, Karina Kelly Fiaux do, GUIMARÃES, Luís Carlos, ALMEIDA, Sintia Silva de, HASSAN, Syed Shah, BAKHTIAR, Syeda Marriam, PEREIRA, Ulisses de Pádua, ABREU, Vinicius Augusto Carvalho de, SCHNEIDER, Maria Paula Cruz, MIYOSHI, Anderson, TAUCH, Andreas, AZEVEDO, Vasco Ariston de Carvalho, https://orcid.org/0000-0001-7299-3724, https://orcid.org, https://orcid.org/0000-0002-8032-1474, https://orcid.org/0000-0003-1522-9871, https://orcid.org/0000-0003-3418-0823, https://orcid.org/0000-0003-1171-7106, https://orcid.org/0000-0002-1067-1882, https://orcid.org/0000-0003-0270-9059, https://orcid.org/0000-0003-4868-4459, https://orcid.org/0000-0002-2538-4827, https://orcid.org/0000-0002-4775-2280
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFPA
Texto Completo: https://repositorio.ufpa.br/jspui/handle/2011/15632
Resumo: Corynebacterium pseudotuberculosis is a facultative intracellular pathogen and the causative agent of several infectious and contagious chronic diseases, including caseous lymphadenitis, ulcerative lymphangitis, mastitis, and edematous skin disease, in a broad spectrum of hosts. In addition, Corynebacterium pseudotuberculosis infections pose a rising worldwide economic problem in ruminants. The complete genome sequences of 15 C. pseudotuberculosis strains isolated from different hosts and countries were comparatively analyzed using a pan-genomic strategy. Phylogenomic, pan-genomic, core genomic, and singleton analyses revealed close relationships among pathogenic corynebacteria, the clonal-like behavior of C. pseudotuberculosis and slow increases in the sizes of pan-genomes. According to extrapolations based on the pan-genomes, core genomes and singletons, the C. pseudotuberculosis biovar ovis shows a more clonal-like behavior than the C. pseudotuberculosis biovar equi. Most of the variable genes of the biovar ovis strains were acquired in a block through horizontal gene transfer and are highly conserved, whereas the biovar equi strains contain great variability, both intra- and inter-biovar, in the 16 detected pathogenicity islands (PAIs). With respect to the gene content of the PAIs, the most interesting finding is the high similarity of the pilus genes in the biovar ovis strains compared with the great variability of these genes in the biovar equi strains. Concluding, the polymerization of complete pilus structures in biovar ovis could be responsible for a remarkable ability of these strains to spread throughout host tissues and penetrate cells to live intracellularly, in contrast with the biovar equi, which rarely attacks visceral organs. Intracellularly, the biovar ovis strains are expected to have less contact with other organisms than the biovar equi strains, thereby explaining the significant clonal-like behavior of the biovar ovis strains.
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spelling 2023-05-30T14:20:47Z2023-05-30T14:20:47Z2013-01SOARES, Siomar C. et al. The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, online, v. 8, n. 1, e53818, Jan. 2013. DOI: https://doi.org/10.1371/journal.pone.0053818. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15632. Acesso em:.1932-6203https://repositorio.ufpa.br/jspui/handle/2011/1563210.1371/journal.pone.0053818Corynebacterium pseudotuberculosis is a facultative intracellular pathogen and the causative agent of several infectious and contagious chronic diseases, including caseous lymphadenitis, ulcerative lymphangitis, mastitis, and edematous skin disease, in a broad spectrum of hosts. In addition, Corynebacterium pseudotuberculosis infections pose a rising worldwide economic problem in ruminants. The complete genome sequences of 15 C. pseudotuberculosis strains isolated from different hosts and countries were comparatively analyzed using a pan-genomic strategy. Phylogenomic, pan-genomic, core genomic, and singleton analyses revealed close relationships among pathogenic corynebacteria, the clonal-like behavior of C. pseudotuberculosis and slow increases in the sizes of pan-genomes. According to extrapolations based on the pan-genomes, core genomes and singletons, the C. pseudotuberculosis biovar ovis shows a more clonal-like behavior than the C. pseudotuberculosis biovar equi. Most of the variable genes of the biovar ovis strains were acquired in a block through horizontal gene transfer and are highly conserved, whereas the biovar equi strains contain great variability, both intra- and inter-biovar, in the 16 detected pathogenicity islands (PAIs). With respect to the gene content of the PAIs, the most interesting finding is the high similarity of the pilus genes in the biovar ovis strains compared with the great variability of these genes in the biovar equi strains. Concluding, the polymerization of complete pilus structures in biovar ovis could be responsible for a remarkable ability of these strains to spread throughout host tissues and penetrate cells to live intracellularly, in contrast with the biovar equi, which rarely attacks visceral organs. Intracellularly, the biovar ovis strains are expected to have less contact with other organisms than the biovar equi strains, thereby explaining the significant clonal-like behavior of the biovar ovis strains.CNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoFAPESPA - Fundação Amazônia de Amparo a Estudos e PesquisasFAPEMIG - Fundação de Amparo à Pesquisa do Estado de Minas GeraisRPGP - Rede Paraense de Genômica e ProteômicaSILVA, A. L. C.; RAMOS, R. T. J.; CARNEIRO, A. R.; SCHNEIDER, M. P. C. 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dc.title.pt_BR.fl_str_mv The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
title The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
spellingShingle The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
SOARES, Siomar de Castro
Corynebacterium pseudotuberculosis
title_short The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
title_full The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
title_fullStr The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
title_full_unstemmed The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
title_sort The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
author SOARES, Siomar de Castro
author_facet SOARES, Siomar de Castro
SILVA, Artur Luiz da Costa da
TROST, Eva
BLOM, Jochen
RAMOS, Rommel Thiago Juca
CARNEIRO, Adriana Ribeiro
ALI, Amjad
SANTOS, Anderson Rodrigues dos
GOMIDE, Anne Cybelle Pinto
DINIZ, Carlos Augusto Almeida
BARBOSA, Eudes Guilherme Vieira
DORELLA, Fernanda Alves
ABURJAILE, Flavia Figueira
ROCHA, Flávia de Souza
NASCIMENTO, Karina Kelly Fiaux do
GUIMARÃES, Luís Carlos
ALMEIDA, Sintia Silva de
HASSAN, Syed Shah
BAKHTIAR, Syeda Marriam
PEREIRA, Ulisses de Pádua
ABREU, Vinicius Augusto Carvalho de
SCHNEIDER, Maria Paula Cruz
MIYOSHI, Anderson
TAUCH, Andreas
AZEVEDO, Vasco Ariston de Carvalho
https://orcid.org/0000-0001-7299-3724
https://orcid.org
https://orcid.org/0000-0002-8032-1474
https://orcid.org/0000-0003-1522-9871
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https://orcid.org/0000-0003-1171-7106
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https://orcid.org/0000-0003-4868-4459
https://orcid.org/0000-0002-2538-4827
https://orcid.org/0000-0002-4775-2280
author_role author
author2 SILVA, Artur Luiz da Costa da
TROST, Eva
BLOM, Jochen
RAMOS, Rommel Thiago Juca
CARNEIRO, Adriana Ribeiro
ALI, Amjad
SANTOS, Anderson Rodrigues dos
GOMIDE, Anne Cybelle Pinto
DINIZ, Carlos Augusto Almeida
BARBOSA, Eudes Guilherme Vieira
DORELLA, Fernanda Alves
ABURJAILE, Flavia Figueira
ROCHA, Flávia de Souza
NASCIMENTO, Karina Kelly Fiaux do
GUIMARÃES, Luís Carlos
ALMEIDA, Sintia Silva de
HASSAN, Syed Shah
BAKHTIAR, Syeda Marriam
PEREIRA, Ulisses de Pádua
ABREU, Vinicius Augusto Carvalho de
SCHNEIDER, Maria Paula Cruz
MIYOSHI, Anderson
TAUCH, Andreas
AZEVEDO, Vasco Ariston de Carvalho
https://orcid.org/0000-0001-7299-3724
https://orcid.org
https://orcid.org/0000-0002-8032-1474
https://orcid.org/0000-0003-1522-9871
https://orcid.org/0000-0003-3418-0823
https://orcid.org/0000-0003-1171-7106
https://orcid.org/0000-0002-1067-1882
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https://orcid.org/0000-0003-4868-4459
https://orcid.org/0000-0002-2538-4827
https://orcid.org/0000-0002-4775-2280
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dc.contributor.author.fl_str_mv SOARES, Siomar de Castro
SILVA, Artur Luiz da Costa da
TROST, Eva
BLOM, Jochen
RAMOS, Rommel Thiago Juca
CARNEIRO, Adriana Ribeiro
ALI, Amjad
SANTOS, Anderson Rodrigues dos
GOMIDE, Anne Cybelle Pinto
DINIZ, Carlos Augusto Almeida
BARBOSA, Eudes Guilherme Vieira
DORELLA, Fernanda Alves
ABURJAILE, Flavia Figueira
ROCHA, Flávia de Souza
NASCIMENTO, Karina Kelly Fiaux do
GUIMARÃES, Luís Carlos
ALMEIDA, Sintia Silva de
HASSAN, Syed Shah
BAKHTIAR, Syeda Marriam
PEREIRA, Ulisses de Pádua
ABREU, Vinicius Augusto Carvalho de
SCHNEIDER, Maria Paula Cruz
MIYOSHI, Anderson
TAUCH, Andreas
AZEVEDO, Vasco Ariston de Carvalho
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dc.subject.eng.fl_str_mv Corynebacterium pseudotuberculosis
topic Corynebacterium pseudotuberculosis
description Corynebacterium pseudotuberculosis is a facultative intracellular pathogen and the causative agent of several infectious and contagious chronic diseases, including caseous lymphadenitis, ulcerative lymphangitis, mastitis, and edematous skin disease, in a broad spectrum of hosts. In addition, Corynebacterium pseudotuberculosis infections pose a rising worldwide economic problem in ruminants. The complete genome sequences of 15 C. pseudotuberculosis strains isolated from different hosts and countries were comparatively analyzed using a pan-genomic strategy. Phylogenomic, pan-genomic, core genomic, and singleton analyses revealed close relationships among pathogenic corynebacteria, the clonal-like behavior of C. pseudotuberculosis and slow increases in the sizes of pan-genomes. According to extrapolations based on the pan-genomes, core genomes and singletons, the C. pseudotuberculosis biovar ovis shows a more clonal-like behavior than the C. pseudotuberculosis biovar equi. Most of the variable genes of the biovar ovis strains were acquired in a block through horizontal gene transfer and are highly conserved, whereas the biovar equi strains contain great variability, both intra- and inter-biovar, in the 16 detected pathogenicity islands (PAIs). With respect to the gene content of the PAIs, the most interesting finding is the high similarity of the pilus genes in the biovar ovis strains compared with the great variability of these genes in the biovar equi strains. Concluding, the polymerization of complete pilus structures in biovar ovis could be responsible for a remarkable ability of these strains to spread throughout host tissues and penetrate cells to live intracellularly, in contrast with the biovar equi, which rarely attacks visceral organs. Intracellularly, the biovar ovis strains are expected to have less contact with other organisms than the biovar equi strains, thereby explaining the significant clonal-like behavior of the biovar ovis strains.
publishDate 2013
dc.date.issued.fl_str_mv 2013-01
dc.date.accessioned.fl_str_mv 2023-05-30T14:20:47Z
dc.date.available.fl_str_mv 2023-05-30T14:20:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.fl_str_mv SOARES, Siomar C. et al. The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, online, v. 8, n. 1, e53818, Jan. 2013. DOI: https://doi.org/10.1371/journal.pone.0053818. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15632. Acesso em:.
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identifier_str_mv SOARES, Siomar C. et al. The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, online, v. 8, n. 1, e53818, Jan. 2013. DOI: https://doi.org/10.1371/journal.pone.0053818. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15632. Acesso em:.
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