Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters

Detalhes bibliográficos
Autor(a) principal: BARROS, Maria Claudene
Data de Publicação: 2003
Outros Autores: SAMPAIO, Maria Iracilda da Cunha, SCHNEIDER, Horacio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFPA
Texto Completo: http://www.repositorio.ufpa.br:8080/jspui/handle/2011/2230
Resumo: We sequenced part of the 16S rRNA mitochondrial gene in 17 extant taxa of Pilosa (sloths and anteaters) and used these sequences along with GenBank sequences of both extant and extinct sloths to perform phylogenetic analysis based on parsimony, maximum-likelihood and Bayesian methods. By increasing the taxa density for anteaters and sloths we were able to clarify some points of the Pilosa phylogenetic tree. Our mitochondrial 16S results show Bradypodidae as a monophyletic and robustly supported clade in all the analysis. However, the Pleistocene fossil Mylodon darwinii does not group significantly to either Bradypodidae or Megalonychidae which indicates that trichotomy best represents the relationship between the families Mylodontidae, Bradypodidae and Megalonychidae. Divergence times also allowed us to discuss the taxonomic status of Cyclopes and the three species of three-toed sloths, Bradypus tridactylus, Bradypus variegatus and Bradypus torquatus. In the Bradypodidae the split between Bradypus torquatus and the proto-Bradypus tridactylus / B. variegatus was estimated as about 7.7 million years ago (MYA), while in the Myrmecophagidae the first offshoot was Cyclopes at about 31.8 MYA followed by the split between Myrmecophaga and Tamandua at 12.9 MYA. We estimate the split between sloths and anteaters to have occurred at about 37 MYA.
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spelling 2011-05-31T18:29:08Z2011-05-31T18:29:08Z2003BARROS, Maria Claudene; SAMPAIO, Iracilda; SCHNEIDER, Horacio. Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters. Genetics and Molecular Biology, São Paulo, v. 26, n. 1, p. 5-11, 2003. Disponível em: <http://www.scielo.br/pdf/gmb/v26n1/a02v26n1.pdf>. Acesso em: 15 mar. 2011. doi: <10.1590/S1415-47572003000100002>.1415-4757http://www.repositorio.ufpa.br:8080/jspui/handle/2011/2230We sequenced part of the 16S rRNA mitochondrial gene in 17 extant taxa of Pilosa (sloths and anteaters) and used these sequences along with GenBank sequences of both extant and extinct sloths to perform phylogenetic analysis based on parsimony, maximum-likelihood and Bayesian methods. By increasing the taxa density for anteaters and sloths we were able to clarify some points of the Pilosa phylogenetic tree. Our mitochondrial 16S results show Bradypodidae as a monophyletic and robustly supported clade in all the analysis. However, the Pleistocene fossil Mylodon darwinii does not group significantly to either Bradypodidae or Megalonychidae which indicates that trichotomy best represents the relationship between the families Mylodontidae, Bradypodidae and Megalonychidae. Divergence times also allowed us to discuss the taxonomic status of Cyclopes and the three species of three-toed sloths, Bradypus tridactylus, Bradypus variegatus and Bradypus torquatus. In the Bradypodidae the split between Bradypus torquatus and the proto-Bradypus tridactylus / B. variegatus was estimated as about 7.7 million years ago (MYA), while in the Myrmecophagidae the first offshoot was Cyclopes at about 31.8 MYA followed by the split between Myrmecophaga and Tamandua at 12.9 MYA. We estimate the split between sloths and anteaters to have occurred at about 37 MYA.engPreguiça (Zoologia)TamanduáFilogenia molecularDNA mitocondrialPhylogenetic analysis of 16S mitochondrial DNA data in sloths and anteatersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBARROS, Maria ClaudeneSAMPAIO, Maria Iracilda da CunhaSCHNEIDER, Horacioinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFPAinstname:Universidade Federal do Pará (UFPA)instacron:UFPAORIGINALArtigo_PhylogeneticAnalysis16S.pdfArtigo_PhylogeneticAnalysis16S.pdfapplication/pdf347858http://repositorio.ufpa.br/oai/bitstream/2011/2230/1/Artigo_PhylogeneticAnalysis16S.pdf72e5a93b19089d1f8cc3e93a28227c05MD51CC-LICENSElicense_urllicense_urltext/plain; charset=utf-849http://repositorio.ufpa.br/oai/bitstream/2011/2230/2/license_urlfd26723f8d7edacdb29e3f03465c3b03MD52license_textlicense_texttext/html; charset=utf-821030http://repositorio.ufpa.br/oai/bitstream/2011/2230/3/license_textafb2f9aa0e51fd9c78a12390c7ef29a0MD53license_rdflicense_rdfapplication/rdf+xml; charset=utf-823422http://repositorio.ufpa.br/oai/bitstream/2011/2230/4/license_rdfb145eda3d84bdc4f56b389c0ab98d368MD54LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufpa.br/oai/bitstream/2011/2230/5/license.txt8a4605be74aa9ea9d79846c1fba20a33MD55TEXTArtigo_PhylogeneticAnalysis16S.pdf.txtArtigo_PhylogeneticAnalysis16S.pdf.txtExtracted texttext/plain35763http://repositorio.ufpa.br/oai/bitstream/2011/2230/6/Artigo_PhylogeneticAnalysis16S.pdf.txtf27875d3cc7aae547c208c1f87db402eMD562011/22302017-10-16 11:29:53.028oai:repositorio.ufpa.br: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Repositório InstitucionalPUBhttp://repositorio.ufpa.br/oai/requestriufpabc@ufpa.bropendoar:21232017-10-16T14:29:53Repositório Institucional da UFPA - Universidade Federal do Pará (UFPA)false
dc.title.pt_BR.fl_str_mv Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
title Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
spellingShingle Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
BARROS, Maria Claudene
Preguiça (Zoologia)
Tamanduá
Filogenia molecular
DNA mitocondrial
title_short Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
title_full Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
title_fullStr Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
title_full_unstemmed Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
title_sort Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters
author BARROS, Maria Claudene
author_facet BARROS, Maria Claudene
SAMPAIO, Maria Iracilda da Cunha
SCHNEIDER, Horacio
author_role author
author2 SAMPAIO, Maria Iracilda da Cunha
SCHNEIDER, Horacio
author2_role author
author
dc.contributor.author.fl_str_mv BARROS, Maria Claudene
SAMPAIO, Maria Iracilda da Cunha
SCHNEIDER, Horacio
dc.subject.por.fl_str_mv Preguiça (Zoologia)
Tamanduá
Filogenia molecular
DNA mitocondrial
topic Preguiça (Zoologia)
Tamanduá
Filogenia molecular
DNA mitocondrial
description We sequenced part of the 16S rRNA mitochondrial gene in 17 extant taxa of Pilosa (sloths and anteaters) and used these sequences along with GenBank sequences of both extant and extinct sloths to perform phylogenetic analysis based on parsimony, maximum-likelihood and Bayesian methods. By increasing the taxa density for anteaters and sloths we were able to clarify some points of the Pilosa phylogenetic tree. Our mitochondrial 16S results show Bradypodidae as a monophyletic and robustly supported clade in all the analysis. However, the Pleistocene fossil Mylodon darwinii does not group significantly to either Bradypodidae or Megalonychidae which indicates that trichotomy best represents the relationship between the families Mylodontidae, Bradypodidae and Megalonychidae. Divergence times also allowed us to discuss the taxonomic status of Cyclopes and the three species of three-toed sloths, Bradypus tridactylus, Bradypus variegatus and Bradypus torquatus. In the Bradypodidae the split between Bradypus torquatus and the proto-Bradypus tridactylus / B. variegatus was estimated as about 7.7 million years ago (MYA), while in the Myrmecophagidae the first offshoot was Cyclopes at about 31.8 MYA followed by the split between Myrmecophaga and Tamandua at 12.9 MYA. We estimate the split between sloths and anteaters to have occurred at about 37 MYA.
publishDate 2003
dc.date.issued.fl_str_mv 2003
dc.date.accessioned.fl_str_mv 2011-05-31T18:29:08Z
dc.date.available.fl_str_mv 2011-05-31T18:29:08Z
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dc.identifier.citation.fl_str_mv BARROS, Maria Claudene; SAMPAIO, Iracilda; SCHNEIDER, Horacio. Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters. Genetics and Molecular Biology, São Paulo, v. 26, n. 1, p. 5-11, 2003. Disponível em: <http://www.scielo.br/pdf/gmb/v26n1/a02v26n1.pdf>. Acesso em: 15 mar. 2011. doi: <10.1590/S1415-47572003000100002>.
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identifier_str_mv BARROS, Maria Claudene; SAMPAIO, Iracilda; SCHNEIDER, Horacio. Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters. Genetics and Molecular Biology, São Paulo, v. 26, n. 1, p. 5-11, 2003. Disponível em: <http://www.scielo.br/pdf/gmb/v26n1/a02v26n1.pdf>. Acesso em: 15 mar. 2011. doi: <10.1590/S1415-47572003000100002>.
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