Avaliação molecular da saliva como meio de detecção do SARS-CoV-2

Detalhes bibliográficos
Autor(a) principal: Bezerra, Felipe Gonçalves
Data de Publicação: 2022
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFPB
Texto Completo: https://repositorio.ufpb.br/jspui/handle/123456789/25807
Resumo: SARS-CoV-2, which causes Covid-19, was first identified in Wuhan, Hubei Province, China, and is now spreading on a global scale. Diagnosis is performed by real-time reverse transcription polymerase chain reaction (RT-qPCR) by nasopharyngeal swab collection (NFS). Due to high testing demand and low supplies of collection materials, the need for alternative methods to facilitate accurate universal Covid-19 screening and pandemic control is highlighted. Thus, this study aimed to evaluate the molecular efficiency of saliva as a means of detecting SARS-CoV-2 in health professionals and patients in the surgical circuit of Hospital Universitário Lauro Wanderley. For this, 365 collections of SNF and saliva samples were performed, which were extracted and quantified in concentration. Identification was performed by RT-qPCR. The results showed that of the 365 samples analyzed, 45 (12.3%) had detection in at least one type of sample and the majority were 27 (60%) asymptomatic. 21 (46.7%) samples were positive for SNF and saliva, while 14 (31.1%) were positive for SNF samples only and 10 (22.2%) were positive for saliva samples only. The concentration of saliva samples was 28.6 and 30.4 ± SD for 7.6 and 8.38 ± SD of SNF. Purity ranged from 1.81 and 0.3 ± SD in saliva to 1.82 and 0.25 ± SD in SNF. Using SNF samples as the gold standard of reference, the sensitivity and specificity of saliva were 60% 97%, while positive and negative predictive values were 68% and 96%, respectively. The accuracy was 93.0% and the Kappa coefficient was 0.596. In conclusion, the results obtained in the self-collection of pure saliva are similar compared to SNF samples, being viable to be used in the detection of SARS-CoV-2.
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spelling Avaliação molecular da saliva como meio de detecção do SARS-CoV-2Biologia celular e molecularCovid-19Infecção por SARS-CoV-2SalivaTeste molecularCellular and molecular biologySARS-CoV-2 infectionSpittleMolecular testCNPQ::CIENCIAS BIOLOGICAS::BIOLOGIA GERALSARS-CoV-2, which causes Covid-19, was first identified in Wuhan, Hubei Province, China, and is now spreading on a global scale. Diagnosis is performed by real-time reverse transcription polymerase chain reaction (RT-qPCR) by nasopharyngeal swab collection (NFS). Due to high testing demand and low supplies of collection materials, the need for alternative methods to facilitate accurate universal Covid-19 screening and pandemic control is highlighted. Thus, this study aimed to evaluate the molecular efficiency of saliva as a means of detecting SARS-CoV-2 in health professionals and patients in the surgical circuit of Hospital Universitário Lauro Wanderley. For this, 365 collections of SNF and saliva samples were performed, which were extracted and quantified in concentration. Identification was performed by RT-qPCR. The results showed that of the 365 samples analyzed, 45 (12.3%) had detection in at least one type of sample and the majority were 27 (60%) asymptomatic. 21 (46.7%) samples were positive for SNF and saliva, while 14 (31.1%) were positive for SNF samples only and 10 (22.2%) were positive for saliva samples only. The concentration of saliva samples was 28.6 and 30.4 ± SD for 7.6 and 8.38 ± SD of SNF. Purity ranged from 1.81 and 0.3 ± SD in saliva to 1.82 and 0.25 ± SD in SNF. Using SNF samples as the gold standard of reference, the sensitivity and specificity of saliva were 60% 97%, while positive and negative predictive values were 68% and 96%, respectively. The accuracy was 93.0% and the Kappa coefficient was 0.596. In conclusion, the results obtained in the self-collection of pure saliva are similar compared to SNF samples, being viable to be used in the detection of SARS-CoV-2.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESO SARS-CoV-2, causador da Covid-19 foi identificado pela primeira vez em Wuhan, província de Hubei, China, e agora se propaga em escala global. O diagnóstico é realizado através da reação em cadeia da polimerase em tempo real de transcrição reversa (RT-qPCR) por coleta Swab nasofarínge (SNF). Devido à alta demanda exames e os baixos suprimentos de materiais de coleta destacam a necessidade de métodos alternativos para facilitar a triagem universal precisa da Covid-19 e controle da pandemia. Desta forma, este estudo teve como objetivo avaliar a eficiência molecular da saliva como meio de detecção do SARS-CoV-2 em profissionais de saúde e pacientes do circuito cirurgico do Hospital Universitário Lauro Wanderley. Para isso, foram realizadas 365 coletas de amostras SNF e saliva que foram extraídas e quantificadas em concentração. A identificação foi realizada através da RT-qPCR. Os resultados mostraram que das 365 amostras analisadas, 45 (12,3%) tiveram detecção em pelo menos um tipo de amostra e a maioria era 27 (60%) assintomáticos. Em SNF e saliva foram postivos em 21 (46,7%) amostras, enquanto 14 (31,1%) foram positivos apenas para amostras SNF e 10 (22,2%) positivo apenas em amostras de saliva. A concentração das amostras de saliva foi de 28,6 e 30,4 ± DP para 7,6 e 8,38 ± DP de SNF. A pureza foi de 1,81 e 0,3 ± DP em saliva para 1,82 e 0,25 ± DP em SNF. Usando amostras SNF como padrão ouro de referência a sensibilidade e especificidade da saliva foram de 60% 97%, equanto os valores preditivos positivos e negativos foram de 68% e 96%, respectivamente. A acurácia foi de 93,0% e o coeficiente Kappa foi de 0,596. Em conclusão, os resultados obtidos na auto coletada da saliva pura é semelhante em comparação com amostras SNF, sendo viável para ser usado na detecção do SARS-CoV-2.Universidade Federal da ParaíbaBrasilBiologia Celular e MolecularPrograma de Pós-Graduação em Biologia Celular e MolecularUFPBAdriano, Soraya Pereira Francohttp://lattes.cnpq.br/2127915426885622Bezerra, João Felipehttp://lattes.cnpq.br/7464620984028550Bezerra, Felipe Gonçalves2023-01-19T17:46:10Z2022-06-172023-01-19T17:46:10Z2022-03-10info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesishttps://repositorio.ufpb.br/jspui/handle/123456789/25807porAttribution-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nd/3.0/br/info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFPBinstname:Universidade Federal da Paraíba (UFPB)instacron:UFPB2023-05-22T17:09:41Zoai:repositorio.ufpb.br:123456789/25807Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufpb.br/PUBhttp://tede.biblioteca.ufpb.br:8080/oai/requestdiretoria@ufpb.br|| diretoria@ufpb.bropendoar:2023-05-22T17:09:41Biblioteca Digital de Teses e Dissertações da UFPB - Universidade Federal da Paraíba (UFPB)false
dc.title.none.fl_str_mv Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
title Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
spellingShingle Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
Bezerra, Felipe Gonçalves
Biologia celular e molecular
Covid-19
Infecção por SARS-CoV-2
Saliva
Teste molecular
Cellular and molecular biology
SARS-CoV-2 infection
Spittle
Molecular test
CNPQ::CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
title_short Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
title_full Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
title_fullStr Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
title_full_unstemmed Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
title_sort Avaliação molecular da saliva como meio de detecção do SARS-CoV-2
author Bezerra, Felipe Gonçalves
author_facet Bezerra, Felipe Gonçalves
author_role author
dc.contributor.none.fl_str_mv Adriano, Soraya Pereira Franco
http://lattes.cnpq.br/2127915426885622
Bezerra, João Felipe
http://lattes.cnpq.br/7464620984028550
dc.contributor.author.fl_str_mv Bezerra, Felipe Gonçalves
dc.subject.por.fl_str_mv Biologia celular e molecular
Covid-19
Infecção por SARS-CoV-2
Saliva
Teste molecular
Cellular and molecular biology
SARS-CoV-2 infection
Spittle
Molecular test
CNPQ::CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
topic Biologia celular e molecular
Covid-19
Infecção por SARS-CoV-2
Saliva
Teste molecular
Cellular and molecular biology
SARS-CoV-2 infection
Spittle
Molecular test
CNPQ::CIENCIAS BIOLOGICAS::BIOLOGIA GERAL
description SARS-CoV-2, which causes Covid-19, was first identified in Wuhan, Hubei Province, China, and is now spreading on a global scale. Diagnosis is performed by real-time reverse transcription polymerase chain reaction (RT-qPCR) by nasopharyngeal swab collection (NFS). Due to high testing demand and low supplies of collection materials, the need for alternative methods to facilitate accurate universal Covid-19 screening and pandemic control is highlighted. Thus, this study aimed to evaluate the molecular efficiency of saliva as a means of detecting SARS-CoV-2 in health professionals and patients in the surgical circuit of Hospital Universitário Lauro Wanderley. For this, 365 collections of SNF and saliva samples were performed, which were extracted and quantified in concentration. Identification was performed by RT-qPCR. The results showed that of the 365 samples analyzed, 45 (12.3%) had detection in at least one type of sample and the majority were 27 (60%) asymptomatic. 21 (46.7%) samples were positive for SNF and saliva, while 14 (31.1%) were positive for SNF samples only and 10 (22.2%) were positive for saliva samples only. The concentration of saliva samples was 28.6 and 30.4 ± SD for 7.6 and 8.38 ± SD of SNF. Purity ranged from 1.81 and 0.3 ± SD in saliva to 1.82 and 0.25 ± SD in SNF. Using SNF samples as the gold standard of reference, the sensitivity and specificity of saliva were 60% 97%, while positive and negative predictive values were 68% and 96%, respectively. The accuracy was 93.0% and the Kappa coefficient was 0.596. In conclusion, the results obtained in the self-collection of pure saliva are similar compared to SNF samples, being viable to be used in the detection of SARS-CoV-2.
publishDate 2022
dc.date.none.fl_str_mv 2022-06-17
2022-03-10
2023-01-19T17:46:10Z
2023-01-19T17:46:10Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.ufpb.br/jspui/handle/123456789/25807
url https://repositorio.ufpb.br/jspui/handle/123456789/25807
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv Attribution-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal da Paraíba
Brasil
Biologia Celular e Molecular
Programa de Pós-Graduação em Biologia Celular e Molecular
UFPB
publisher.none.fl_str_mv Universidade Federal da Paraíba
Brasil
Biologia Celular e Molecular
Programa de Pós-Graduação em Biologia Celular e Molecular
UFPB
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UFPB
instname:Universidade Federal da Paraíba (UFPB)
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reponame_str Biblioteca Digital de Teses e Dissertações da UFPB
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da UFPB - Universidade Federal da Paraíba (UFPB)
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