Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | por |
Título da fonte: | Revista de Ciências Agrárias (Belém. Online) |
Texto Completo: | https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134 |
Resumo: | Rhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed. |
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Revista de Ciências Agrárias (Belém. Online) |
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Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markersVariabilidade genética de isolados de Rhizoctonia solani, de parte aérea, analisadas por meio de marcadores RAPDRhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed.Rhizoctonia solani é um fungo cosmopolita, com vasto número de hospedeiros, e causa importantes doenças na maioria das plantas cultivadas em todo o mundo. Diferentes técnicas têm sido utilizadas com o intuito de estudar a diversidade genética de R. solani. Dentre elas, os marcadores de DNA do tipo RAPD (Random Amplified Polymorphic DNA) constituem instrumentos para caracterizar e avaliar o germoplasma rapidamente e com eficiência. Em virtude da variabilidade existente nos sintomas produzidos por esse patógeno, o objetivo do presente trabalho é avaliar a variabilidade genética de 13 isolados de R. solani que induzem, na sua maioria, sintomas na parte aérea dos vegetais infectados, utilizando-se marcadores moleculares de DNA, do tipo RAPD. A análise molecular do DNA extraído dos isolados com o primers OPA1 e OPA2 permitiu visualizar 17 bandas polimórficas com tamanhos que variavam entre 800 a 1800 bp, gerando 100% de polimorfismo entre os 13 isoladosestudados. A similaridade entre as amostras, estimada pelo coeficiente de Jaccard, foi de 21,71%, sendo gerado pelo método UPGMA um dendrograma que permitiu agrupar os isolados em 7 grupos principais. Com base nas avaliações realizadas, concluiu-se que há uma grande variabilidade molecularentre os isolados de R. solani analisados.Universidade Federal Rural da Amazônia/UFRA2011-03-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/134Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 52 No 1 (2009): RCA; 179-187Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 52 n. 1 (2009): RCA; 179-1872177-87601517-591Xreponame:Revista de Ciências Agrárias (Belém. Online)instname:Universidade Federal Rural da Amazônia (UFRA)instacron:UFRAporhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/134/29Castro, Carla Vanessa Borges SavonittiMiranda, Vicente SavonittiBrioso, Paulo Sérgio TorresPoltronieri, Luiz SebastiãoReis, Iulla Naif Rabelo de Souzainfo:eu-repo/semantics/openAccess2018-12-18T18:41:38Zoai:ojs.www.periodicos.ufra.edu.br:article/134Revistahttps://ajaes.ufra.edu.br/index.php/ajaes/PUBhttps://ajaes.ufra.edu.br/index.php/ajaes/oaiallan.lobato@ufra.edu.br || ajaes.suporte@gmail.com2177-87601517-591Xopendoar:2018-12-18T18:41:38Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA)false |
dc.title.none.fl_str_mv |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers Variabilidade genética de isolados de Rhizoctonia solani, de parte aérea, analisadas por meio de marcadores RAPD |
title |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
spellingShingle |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers Castro, Carla Vanessa Borges Savonitti |
title_short |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
title_full |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
title_fullStr |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
title_full_unstemmed |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
title_sort |
Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers |
author |
Castro, Carla Vanessa Borges Savonitti |
author_facet |
Castro, Carla Vanessa Borges Savonitti Miranda, Vicente Savonitti Brioso, Paulo Sérgio Torres Poltronieri, Luiz Sebastião Reis, Iulla Naif Rabelo de Souza |
author_role |
author |
author2 |
Miranda, Vicente Savonitti Brioso, Paulo Sérgio Torres Poltronieri, Luiz Sebastião Reis, Iulla Naif Rabelo de Souza |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Castro, Carla Vanessa Borges Savonitti Miranda, Vicente Savonitti Brioso, Paulo Sérgio Torres Poltronieri, Luiz Sebastião Reis, Iulla Naif Rabelo de Souza |
description |
Rhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-03-11 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134 |
url |
https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.none.fl_str_mv |
https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134/29 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal Rural da Amazônia/UFRA |
publisher.none.fl_str_mv |
Universidade Federal Rural da Amazônia/UFRA |
dc.source.none.fl_str_mv |
Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 52 No 1 (2009): RCA; 179-187 Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 52 n. 1 (2009): RCA; 179-187 2177-8760 1517-591X reponame:Revista de Ciências Agrárias (Belém. Online) instname:Universidade Federal Rural da Amazônia (UFRA) instacron:UFRA |
instname_str |
Universidade Federal Rural da Amazônia (UFRA) |
instacron_str |
UFRA |
institution |
UFRA |
reponame_str |
Revista de Ciências Agrárias (Belém. Online) |
collection |
Revista de Ciências Agrárias (Belém. Online) |
repository.name.fl_str_mv |
Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA) |
repository.mail.fl_str_mv |
allan.lobato@ufra.edu.br || ajaes.suporte@gmail.com |
_version_ |
1797231626053222400 |