Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers

Detalhes bibliográficos
Autor(a) principal: Castro, Carla Vanessa Borges Savonitti
Data de Publicação: 2011
Outros Autores: Miranda, Vicente Savonitti, Brioso, Paulo Sérgio Torres, Poltronieri, Luiz Sebastião, Reis, Iulla Naif Rabelo de Souza
Tipo de documento: Artigo
Idioma: por
Título da fonte: Revista de Ciências Agrárias (Belém. Online)
Texto Completo: https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134
Resumo: Rhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed.
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spelling Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markersVariabilidade genética de isolados de Rhizoctonia solani, de parte aérea, analisadas por meio de marcadores RAPDRhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed.Rhizoctonia solani é um fungo cosmopolita, com vasto número de hospedeiros, e causa importantes doenças na maioria das plantas cultivadas em todo o mundo. Diferentes técnicas têm sido utilizadas com o intuito de estudar a diversidade genética de R. solani. Dentre elas, os marcadores de DNA do tipo RAPD (Random Amplified Polymorphic DNA) constituem instrumentos para caracterizar e avaliar o germoplasma rapidamente e com eficiência. Em virtude da variabilidade existente nos sintomas produzidos por esse patógeno, o objetivo do presente trabalho é avaliar a variabilidade genética de 13 isolados de R. solani que induzem, na sua maioria, sintomas na parte aérea dos vegetais infectados, utilizando-se marcadores moleculares de DNA, do tipo RAPD. A análise molecular do DNA extraído dos isolados com o primers OPA1 e OPA2 permitiu visualizar 17 bandas polimórficas com tamanhos que variavam entre 800 a 1800 bp, gerando 100% de polimorfismo entre os 13 isoladosestudados. A similaridade entre as amostras, estimada pelo coeficiente de Jaccard, foi de 21,71%, sendo gerado pelo método UPGMA um dendrograma que permitiu agrupar os isolados em 7 grupos principais. Com base nas avaliações realizadas, concluiu-se que há uma grande variabilidade molecularentre os isolados de R. solani analisados.Universidade Federal Rural da Amazônia/UFRA2011-03-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/134Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 52 No 1 (2009): RCA; 179-187Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 52 n. 1 (2009): RCA; 179-1872177-87601517-591Xreponame:Revista de Ciências Agrárias (Belém. Online)instname:Universidade Federal Rural da Amazônia (UFRA)instacron:UFRAporhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/134/29Castro, Carla Vanessa Borges SavonittiMiranda, Vicente SavonittiBrioso, Paulo Sérgio TorresPoltronieri, Luiz SebastiãoReis, Iulla Naif Rabelo de Souzainfo:eu-repo/semantics/openAccess2018-12-18T18:41:38Zoai:ojs.www.periodicos.ufra.edu.br:article/134Revistahttps://ajaes.ufra.edu.br/index.php/ajaes/PUBhttps://ajaes.ufra.edu.br/index.php/ajaes/oaiallan.lobato@ufra.edu.br || ajaes.suporte@gmail.com2177-87601517-591Xopendoar:2018-12-18T18:41:38Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA)false
dc.title.none.fl_str_mv Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
Variabilidade genética de isolados de Rhizoctonia solani, de parte aérea, analisadas por meio de marcadores RAPD
title Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
spellingShingle Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
Castro, Carla Vanessa Borges Savonitti
title_short Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
title_full Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
title_fullStr Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
title_full_unstemmed Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
title_sort Genetic variability of isolates of Rhizoctonia solani, the shoots analyzed by RAPD markers
author Castro, Carla Vanessa Borges Savonitti
author_facet Castro, Carla Vanessa Borges Savonitti
Miranda, Vicente Savonitti
Brioso, Paulo Sérgio Torres
Poltronieri, Luiz Sebastião
Reis, Iulla Naif Rabelo de Souza
author_role author
author2 Miranda, Vicente Savonitti
Brioso, Paulo Sérgio Torres
Poltronieri, Luiz Sebastião
Reis, Iulla Naif Rabelo de Souza
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Castro, Carla Vanessa Borges Savonitti
Miranda, Vicente Savonitti
Brioso, Paulo Sérgio Torres
Poltronieri, Luiz Sebastião
Reis, Iulla Naif Rabelo de Souza
description Rhizoctonia solani is a cosmopolitan fungus with large number of hosts and cause important diseases in many cultivated plants around the world. Different techniques have been used in order to study the genetic diversity of R. solani. Among them, the DNA markers RAPD (Random Amplified Polymorphic DNA) are tools to characterize and evaluate germplasm quickly and efficiently. Because of the variability in symptoms produced by this pathogen, the objective of this study is to evaluate the genetic variability of 13 isolates of R. solani that induce, mostly symptoms in shoots of infected plants, using molecular markers DNA, RAPD. Molecular analysis of extracted DNA of isolates with primers OPA1 and OPA2 allowed visualization of 17 polymorphic bands with sizes ranging from 800-1800 bp, generating a 100% polymorphism among the isolates 13 studied. The similarity between the samples, estimated by the Jaccard coefficient was 21.71%, being generated by the UPGMA dendrogram one that allowed grouping the isolates into seven main groups. Based on assessments conducted, it was concluded that there is a large molecular variability among isolates of R. solani analyzed.
publishDate 2011
dc.date.none.fl_str_mv 2011-03-11
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134
url https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://ajaes.ufra.edu.br/index.php/ajaes/article/view/134/29
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal Rural da Amazônia/UFRA
publisher.none.fl_str_mv Universidade Federal Rural da Amazônia/UFRA
dc.source.none.fl_str_mv Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 52 No 1 (2009): RCA; 179-187
Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 52 n. 1 (2009): RCA; 179-187
2177-8760
1517-591X
reponame:Revista de Ciências Agrárias (Belém. Online)
instname:Universidade Federal Rural da Amazônia (UFRA)
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instname_str Universidade Federal Rural da Amazônia (UFRA)
instacron_str UFRA
institution UFRA
reponame_str Revista de Ciências Agrárias (Belém. Online)
collection Revista de Ciências Agrárias (Belém. Online)
repository.name.fl_str_mv Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA)
repository.mail.fl_str_mv allan.lobato@ufra.edu.br || ajaes.suporte@gmail.com
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