Genetic diversity of sacha inchi accessions detected by AFLP molecular markers

Detalhes bibliográficos
Autor(a) principal: Rodrigues, Haroldo Silva
Data de Publicação: 2014
Outros Autores: Borem, Aluizio, Lopes, Maria Teresa Gomes, Cruz, Cosme Damião, Chaves, Francisco Célio Maia, Bentes, Jânia Lília da Silva
Tipo de documento: Artigo
Idioma: por
Título da fonte: Revista de Ciências Agrárias (Belém. Online)
Texto Completo: https://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469
Resumo:   Sacha inchi (Plukenetia volubilis L.) is a species native to the Amazon region for which studies of genetic diversity are required to ensure the success in programs to breed cultivars for agriculture. The purpose of this study was to assess the genetic diversity among sacha inchi accessions using amplified fragment length polymorphism (AFLP) markers. Thirty-seven accessions of the sacha inchi germplasm bank of Embrapa Amazônia Ocidental were analyzed. The markers were identified with four primer combinations. The percentage of polymorphic loci was estimated and the similarity of accessions analyzed by calculating the arithmetic complement of the Jaccard coefficient and cluster analysis. The primers revealed 191 polymorphic loci. The parameters of the similarity values in class intervals were on average 0.739 and variance 0.01. The estimates of the number and percentage of the genetic distance values per class interval were highest in the range of 0.7 to 0.79, (248 and 37.24%, respectively); the highest percentage, 69.22%, corresponded to values of genetic distance above 0.7, showing mostly high genetic diversity among the accessions. The results indicated a geographic structure among accessions in relation to their origin, generating consistent and valuable data for breeding programs and species conservation.
id UFRA_d96506fdb54a86090fde729a9163b2cd
oai_identifier_str oai:ojs.www.periodicos.ufra.edu.br:article/1469
network_acronym_str UFRA
network_name_str Revista de Ciências Agrárias (Belém. Online)
repository_id_str
spelling Genetic diversity of sacha inchi accessions detected by AFLP molecular markers  Sacha inchi (Plukenetia volubilis L.) is a species native to the Amazon region for which studies of genetic diversity are required to ensure the success in programs to breed cultivars for agriculture. The purpose of this study was to assess the genetic diversity among sacha inchi accessions using amplified fragment length polymorphism (AFLP) markers. Thirty-seven accessions of the sacha inchi germplasm bank of Embrapa Amazônia Ocidental were analyzed. The markers were identified with four primer combinations. The percentage of polymorphic loci was estimated and the similarity of accessions analyzed by calculating the arithmetic complement of the Jaccard coefficient and cluster analysis. The primers revealed 191 polymorphic loci. The parameters of the similarity values in class intervals were on average 0.739 and variance 0.01. The estimates of the number and percentage of the genetic distance values per class interval were highest in the range of 0.7 to 0.79, (248 and 37.24%, respectively); the highest percentage, 69.22%, corresponded to values of genetic distance above 0.7, showing mostly high genetic diversity among the accessions. The results indicated a geographic structure among accessions in relation to their origin, generating consistent and valuable data for breeding programs and species conservation.Universidade Federal Rural da Amazônia/UFRA2014-02-25info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 56 No Suple (2013): RCA; 55-60Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 56 n. Suple (2013): RCA; 55-602177-87601517-591Xreponame:Revista de Ciências Agrárias (Belém. Online)instname:Universidade Federal Rural da Amazônia (UFRA)instacron:UFRAporhttps://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469/451Rodrigues, Haroldo SilvaBorem, AluizioLopes, Maria Teresa GomesCruz, Cosme DamiãoChaves, Francisco Célio MaiaBentes, Jânia Lília da Silvainfo:eu-repo/semantics/openAccess2018-12-18T18:48:38Zoai:ojs.www.periodicos.ufra.edu.br:article/1469Revistahttps://ajaes.ufra.edu.br/index.php/ajaes/PUBhttps://ajaes.ufra.edu.br/index.php/ajaes/oaiallan.lobato@ufra.edu.br || ajaes.suporte@gmail.com2177-87601517-591Xopendoar:2018-12-18T18:48:38Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA)false
dc.title.none.fl_str_mv Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
title Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
spellingShingle Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
Rodrigues, Haroldo Silva
title_short Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
title_full Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
title_fullStr Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
title_full_unstemmed Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
title_sort Genetic diversity of sacha inchi accessions detected by AFLP molecular markers
author Rodrigues, Haroldo Silva
author_facet Rodrigues, Haroldo Silva
Borem, Aluizio
Lopes, Maria Teresa Gomes
Cruz, Cosme Damião
Chaves, Francisco Célio Maia
Bentes, Jânia Lília da Silva
author_role author
author2 Borem, Aluizio
Lopes, Maria Teresa Gomes
Cruz, Cosme Damião
Chaves, Francisco Célio Maia
Bentes, Jânia Lília da Silva
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Rodrigues, Haroldo Silva
Borem, Aluizio
Lopes, Maria Teresa Gomes
Cruz, Cosme Damião
Chaves, Francisco Célio Maia
Bentes, Jânia Lília da Silva
description   Sacha inchi (Plukenetia volubilis L.) is a species native to the Amazon region for which studies of genetic diversity are required to ensure the success in programs to breed cultivars for agriculture. The purpose of this study was to assess the genetic diversity among sacha inchi accessions using amplified fragment length polymorphism (AFLP) markers. Thirty-seven accessions of the sacha inchi germplasm bank of Embrapa Amazônia Ocidental were analyzed. The markers were identified with four primer combinations. The percentage of polymorphic loci was estimated and the similarity of accessions analyzed by calculating the arithmetic complement of the Jaccard coefficient and cluster analysis. The primers revealed 191 polymorphic loci. The parameters of the similarity values in class intervals were on average 0.739 and variance 0.01. The estimates of the number and percentage of the genetic distance values per class interval were highest in the range of 0.7 to 0.79, (248 and 37.24%, respectively); the highest percentage, 69.22%, corresponded to values of genetic distance above 0.7, showing mostly high genetic diversity among the accessions. The results indicated a geographic structure among accessions in relation to their origin, generating consistent and valuable data for breeding programs and species conservation.
publishDate 2014
dc.date.none.fl_str_mv 2014-02-25
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469
url https://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://ajaes.ufra.edu.br/index.php/ajaes/article/view/1469/451
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal Rural da Amazônia/UFRA
publisher.none.fl_str_mv Universidade Federal Rural da Amazônia/UFRA
dc.source.none.fl_str_mv Amazonian Journal of Agricultural Sciences Journal of Agricultural and Environmental Sciences; Vol 56 No Suple (2013): RCA; 55-60
Revista de Ciências Agrárias Amazonian Journal of Agricultural and Environmental Sciences; v. 56 n. Suple (2013): RCA; 55-60
2177-8760
1517-591X
reponame:Revista de Ciências Agrárias (Belém. Online)
instname:Universidade Federal Rural da Amazônia (UFRA)
instacron:UFRA
instname_str Universidade Federal Rural da Amazônia (UFRA)
instacron_str UFRA
institution UFRA
reponame_str Revista de Ciências Agrárias (Belém. Online)
collection Revista de Ciências Agrárias (Belém. Online)
repository.name.fl_str_mv Revista de Ciências Agrárias (Belém. Online) - Universidade Federal Rural da Amazônia (UFRA)
repository.mail.fl_str_mv allan.lobato@ufra.edu.br || ajaes.suporte@gmail.com
_version_ 1797231627625037824