Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans

Detalhes bibliográficos
Autor(a) principal: Wu, Sijiie
Data de Publicação: 2018
Outros Autores: Zhang, Manfei, Peng, Fuduan, Zhang, Juan, Tan, Jingze, Faccini, Lavinia Schuler, Bortolini, Maria Cátira, Gallo, Carla, Wang, Sijia
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/263508
Resumo: Hair plays an important role in primates and is clearly subject to adaptive selection. While humans have lost most facial hair, eyebrows are a notable exception. Eyebrow thickness is heritable and widely believed to be subject to sexual selection. Nevertheless, few genomic studies have explored its genetic basis. Here, we performed a genome-wide scan for eyebrow thickness in 2961 Han Chinese. We identified two new loci of genome-wide significance, at 3q26.33 near SOX2 (rs1345417: P = 6.51×10−10) and at 5q13.2 near FOXD1 (rs12651896: P = 1.73×10−8 ). We further replicated our findings in the Uyghurs, a population from China characterized by East Asian-European admixture (N = 721), the CANDELA cohort from five Latin American countries (N = 2301), and the Rotterdam Study cohort of Dutch Europeans (N = 4411). A meta-analysis combining the full GWAS results from the three cohorts of full or partial Asian descent (Han Chinese, Uyghur and Latin Americans, N = 5983) highlighted a third signal of genome-wide significance at 2q12.3 (rs1866188: P = 5.81×10−11) near EDAR. We performed fine-mapping and prioritized four variants for further experimental verification. CRISPR/Cas9-mediated gene editing provided evidence that rs1345417 and rs12651896 affect the transcriptional activity of the nearby SOX2 and FOXD1 genes, which are both involved in hair development. Finally, suitable statistical analyses revealed that none of the associated variants showed clear signals of selection in any of the populations tested. Contrary to popular speculation, we found no evidence that eyebrow thickness is subject to strong selective pressure.
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spelling Wu, SijiieZhang, ManfeiPeng, FuduanZhang, JuanTan, JingzeFaccini, Lavinia SchulerBortolini, Maria CátiraGallo, CarlaWang, Sijia2023-08-15T03:26:15Z20181553-7390http://hdl.handle.net/10183/263508001105823Hair plays an important role in primates and is clearly subject to adaptive selection. While humans have lost most facial hair, eyebrows are a notable exception. Eyebrow thickness is heritable and widely believed to be subject to sexual selection. Nevertheless, few genomic studies have explored its genetic basis. Here, we performed a genome-wide scan for eyebrow thickness in 2961 Han Chinese. We identified two new loci of genome-wide significance, at 3q26.33 near SOX2 (rs1345417: P = 6.51×10−10) and at 5q13.2 near FOXD1 (rs12651896: P = 1.73×10−8 ). We further replicated our findings in the Uyghurs, a population from China characterized by East Asian-European admixture (N = 721), the CANDELA cohort from five Latin American countries (N = 2301), and the Rotterdam Study cohort of Dutch Europeans (N = 4411). A meta-analysis combining the full GWAS results from the three cohorts of full or partial Asian descent (Han Chinese, Uyghur and Latin Americans, N = 5983) highlighted a third signal of genome-wide significance at 2q12.3 (rs1866188: P = 5.81×10−11) near EDAR. We performed fine-mapping and prioritized four variants for further experimental verification. CRISPR/Cas9-mediated gene editing provided evidence that rs1345417 and rs12651896 affect the transcriptional activity of the nearby SOX2 and FOXD1 genes, which are both involved in hair development. Finally, suitable statistical analyses revealed that none of the associated variants showed clear signals of selection in any of the populations tested. Contrary to popular speculation, we found no evidence that eyebrow thickness is subject to strong selective pressure.application/pdfengPlos Genetics. Cambridge. Vol. 14, n. 9 (2018), e1007640, 22 p.FenótipoGenética humanaGenoma humanoCRISPR-Cas9SobrancelhaGenome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humansEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001105823.pdf.txt001105823.pdf.txtExtracted Texttext/plain82707http://www.lume.ufrgs.br/bitstream/10183/263508/2/001105823.pdf.txt49cb6727abb3e03e562cb100d36cd8a6MD52ORIGINAL001105823.pdfTexto completo (inglês)application/pdf4947408http://www.lume.ufrgs.br/bitstream/10183/263508/1/001105823.pdfa9f88469fe9292740de5310ed8274091MD5110183/2635082023-08-16 03:30:12.089344oai:www.lume.ufrgs.br:10183/263508Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-08-16T06:30:12Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
title Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
spellingShingle Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
Wu, Sijiie
Fenótipo
Genética humana
Genoma humano
CRISPR-Cas9
Sobrancelha
title_short Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
title_full Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
title_fullStr Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
title_full_unstemmed Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
title_sort Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
author Wu, Sijiie
author_facet Wu, Sijiie
Zhang, Manfei
Peng, Fuduan
Zhang, Juan
Tan, Jingze
Faccini, Lavinia Schuler
Bortolini, Maria Cátira
Gallo, Carla
Wang, Sijia
author_role author
author2 Zhang, Manfei
Peng, Fuduan
Zhang, Juan
Tan, Jingze
Faccini, Lavinia Schuler
Bortolini, Maria Cátira
Gallo, Carla
Wang, Sijia
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Wu, Sijiie
Zhang, Manfei
Peng, Fuduan
Zhang, Juan
Tan, Jingze
Faccini, Lavinia Schuler
Bortolini, Maria Cátira
Gallo, Carla
Wang, Sijia
dc.subject.por.fl_str_mv Fenótipo
Genética humana
Genoma humano
CRISPR-Cas9
Sobrancelha
topic Fenótipo
Genética humana
Genoma humano
CRISPR-Cas9
Sobrancelha
description Hair plays an important role in primates and is clearly subject to adaptive selection. While humans have lost most facial hair, eyebrows are a notable exception. Eyebrow thickness is heritable and widely believed to be subject to sexual selection. Nevertheless, few genomic studies have explored its genetic basis. Here, we performed a genome-wide scan for eyebrow thickness in 2961 Han Chinese. We identified two new loci of genome-wide significance, at 3q26.33 near SOX2 (rs1345417: P = 6.51×10−10) and at 5q13.2 near FOXD1 (rs12651896: P = 1.73×10−8 ). We further replicated our findings in the Uyghurs, a population from China characterized by East Asian-European admixture (N = 721), the CANDELA cohort from five Latin American countries (N = 2301), and the Rotterdam Study cohort of Dutch Europeans (N = 4411). A meta-analysis combining the full GWAS results from the three cohorts of full or partial Asian descent (Han Chinese, Uyghur and Latin Americans, N = 5983) highlighted a third signal of genome-wide significance at 2q12.3 (rs1866188: P = 5.81×10−11) near EDAR. We performed fine-mapping and prioritized four variants for further experimental verification. CRISPR/Cas9-mediated gene editing provided evidence that rs1345417 and rs12651896 affect the transcriptional activity of the nearby SOX2 and FOXD1 genes, which are both involved in hair development. Finally, suitable statistical analyses revealed that none of the associated variants showed clear signals of selection in any of the populations tested. Contrary to popular speculation, we found no evidence that eyebrow thickness is subject to strong selective pressure.
publishDate 2018
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dc.relation.ispartof.pt_BR.fl_str_mv Plos Genetics. Cambridge. Vol. 14, n. 9 (2018), e1007640, 22 p.
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