Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads

Detalhes bibliográficos
Autor(a) principal: Zanella, Camila Martini
Data de Publicação: 2012
Outros Autores: Janke, Aline, Paggi, Gecele Matos, Goetze, Márcia, Reis, Mauricio Sedrez dos, Bered, Fernanda
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/267598
Resumo: Microsatellite markers were isolated in Dyckia distachya, an endangered bromeliad from southern Brazil, which will be useful to assess the population genetic structure and reproductive success in introduced and natural populations of this species. Twenty microsatellite loci were developed from an enriched genomic library, and nine of these were amplified. The loci were characterized in 43 individuals from introduced and wild D. distachya populations. All nine loci were polymorphic, with four to ten alleles per locus. In an introduced population the observed and expected heterozygosities ranged from 0.136–0.667 and 0.543–0.877, respectively, while in a wild population it ranged from 0.000 to 0.895 and from 0.050 to 0.811, respectively. The development of these microsatellite markers will contribute to investigations of the reproductive potential and viability of introduced populations of D. distachya as well as the single known wild population. Cross-amplification in other Bromeliaceae species was successful, with high rates in four loci, demonstrating the applicability of these microsatellite markers in other taxa.
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spelling Zanella, Camila MartiniJanke, AlinePaggi, Gecele MatosGoetze, MárciaReis, Mauricio Sedrez dosBered, Fernanda2023-11-25T03:25:50Z20121422-0067http://hdl.handle.net/10183/267598000931812Microsatellite markers were isolated in Dyckia distachya, an endangered bromeliad from southern Brazil, which will be useful to assess the population genetic structure and reproductive success in introduced and natural populations of this species. Twenty microsatellite loci were developed from an enriched genomic library, and nine of these were amplified. The loci were characterized in 43 individuals from introduced and wild D. distachya populations. All nine loci were polymorphic, with four to ten alleles per locus. In an introduced population the observed and expected heterozygosities ranged from 0.136–0.667 and 0.543–0.877, respectively, while in a wild population it ranged from 0.000 to 0.895 and from 0.050 to 0.811, respectively. The development of these microsatellite markers will contribute to investigations of the reproductive potential and viability of introduced populations of D. distachya as well as the single known wild population. Cross-amplification in other Bromeliaceae species was successful, with high rates in four loci, demonstrating the applicability of these microsatellite markers in other taxa.application/pdfengInternational journal of molecular sciences. Basel. Vol. 13, no. 12 (Nov. 2012), p. 15859-15866MicrossatéliteDickia distachyaEndemismoBromeliadEndemismRheophytic speciesMicrosatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliadsEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT000931812.pdf.txt000931812.pdf.txtExtracted Texttext/plain20424http://www.lume.ufrgs.br/bitstream/10183/267598/2/000931812.pdf.txta4c8bb89e3dee0d2254c3c4a71d8aac2MD52ORIGINAL000931812.pdfTexto completo (inglês)application/pdf164172http://www.lume.ufrgs.br/bitstream/10183/267598/1/000931812.pdfa7a7a93afa0c684dcd43c3451b4fc410MD5110183/2675982023-12-06 04:24:24.639455oai:www.lume.ufrgs.br:10183/267598Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-12-06T06:24:24Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
title Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
spellingShingle Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
Zanella, Camila Martini
Microssatélite
Dickia distachya
Endemismo
Bromeliad
Endemism
Rheophytic species
title_short Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
title_full Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
title_fullStr Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
title_full_unstemmed Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
title_sort Microsatellites in the endangered species Dyckia distachya (Bromeliaceae) and cross-amplification in other bromeliads
author Zanella, Camila Martini
author_facet Zanella, Camila Martini
Janke, Aline
Paggi, Gecele Matos
Goetze, Márcia
Reis, Mauricio Sedrez dos
Bered, Fernanda
author_role author
author2 Janke, Aline
Paggi, Gecele Matos
Goetze, Márcia
Reis, Mauricio Sedrez dos
Bered, Fernanda
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Zanella, Camila Martini
Janke, Aline
Paggi, Gecele Matos
Goetze, Márcia
Reis, Mauricio Sedrez dos
Bered, Fernanda
dc.subject.por.fl_str_mv Microssatélite
Dickia distachya
Endemismo
topic Microssatélite
Dickia distachya
Endemismo
Bromeliad
Endemism
Rheophytic species
dc.subject.eng.fl_str_mv Bromeliad
Endemism
Rheophytic species
description Microsatellite markers were isolated in Dyckia distachya, an endangered bromeliad from southern Brazil, which will be useful to assess the population genetic structure and reproductive success in introduced and natural populations of this species. Twenty microsatellite loci were developed from an enriched genomic library, and nine of these were amplified. The loci were characterized in 43 individuals from introduced and wild D. distachya populations. All nine loci were polymorphic, with four to ten alleles per locus. In an introduced population the observed and expected heterozygosities ranged from 0.136–0.667 and 0.543–0.877, respectively, while in a wild population it ranged from 0.000 to 0.895 and from 0.050 to 0.811, respectively. The development of these microsatellite markers will contribute to investigations of the reproductive potential and viability of introduced populations of D. distachya as well as the single known wild population. Cross-amplification in other Bromeliaceae species was successful, with high rates in four loci, demonstrating the applicability of these microsatellite markers in other taxa.
publishDate 2012
dc.date.issued.fl_str_mv 2012
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dc.relation.ispartof.pt_BR.fl_str_mv International journal of molecular sciences. Basel. Vol. 13, no. 12 (Nov. 2012), p. 15859-15866
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