Isolation and characterization of microsatellite markers for Passiflora contracta
Autor(a) principal: | |
---|---|
Data de Publicação: | 2012 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/267687 |
Resumo: | Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species. |
id |
UFRGS-2_2a040330ea90db27dd70829541d19899 |
---|---|
oai_identifier_str |
oai:www.lume.ufrgs.br:10183/267687 |
network_acronym_str |
UFRGS-2 |
network_name_str |
Repositório Institucional da UFRGS |
repository_id_str |
|
spelling |
Cazé, Ana Luíza RamosKriedt, Raquel AthaydeBeheregaray, Luciano B.Bonatto, Sandro LuisFreitas, Loreta Brandão de2023-11-25T03:28:05Z20121422-0067http://hdl.handle.net/10183/267687000873753Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species.application/pdfengInternational journal of molecular sciences. Basel. Vol. 13, no. 9 (June 2012), p. 11343-11348MicrossatélitePassiflora contractaNuclear microsatellitesConservation geneticsIsolation and characterization of microsatellite markers for Passiflora contractaEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT000873753.pdf.txt000873753.pdf.txtExtracted Texttext/plain14967http://www.lume.ufrgs.br/bitstream/10183/267687/2/000873753.pdf.txt1c6da234e213d021fa89e033ddd4b127MD52ORIGINAL000873753.pdfTexto completo (inglês)application/pdf163806http://www.lume.ufrgs.br/bitstream/10183/267687/1/000873753.pdf1be06278ba91344130a771d67a459793MD5110183/2676872023-12-06 04:25:41.217568oai:www.lume.ufrgs.br:10183/267687Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-12-06T06:25:41Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Isolation and characterization of microsatellite markers for Passiflora contracta |
title |
Isolation and characterization of microsatellite markers for Passiflora contracta |
spellingShingle |
Isolation and characterization of microsatellite markers for Passiflora contracta Cazé, Ana Luíza Ramos Microssatélite Passiflora contracta Nuclear microsatellites Conservation genetics |
title_short |
Isolation and characterization of microsatellite markers for Passiflora contracta |
title_full |
Isolation and characterization of microsatellite markers for Passiflora contracta |
title_fullStr |
Isolation and characterization of microsatellite markers for Passiflora contracta |
title_full_unstemmed |
Isolation and characterization of microsatellite markers for Passiflora contracta |
title_sort |
Isolation and characterization of microsatellite markers for Passiflora contracta |
author |
Cazé, Ana Luíza Ramos |
author_facet |
Cazé, Ana Luíza Ramos Kriedt, Raquel Athayde Beheregaray, Luciano B. Bonatto, Sandro Luis Freitas, Loreta Brandão de |
author_role |
author |
author2 |
Kriedt, Raquel Athayde Beheregaray, Luciano B. Bonatto, Sandro Luis Freitas, Loreta Brandão de |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Cazé, Ana Luíza Ramos Kriedt, Raquel Athayde Beheregaray, Luciano B. Bonatto, Sandro Luis Freitas, Loreta Brandão de |
dc.subject.por.fl_str_mv |
Microssatélite Passiflora contracta |
topic |
Microssatélite Passiflora contracta Nuclear microsatellites Conservation genetics |
dc.subject.eng.fl_str_mv |
Nuclear microsatellites Conservation genetics |
description |
Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species. |
publishDate |
2012 |
dc.date.issued.fl_str_mv |
2012 |
dc.date.accessioned.fl_str_mv |
2023-11-25T03:28:05Z |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/267687 |
dc.identifier.issn.pt_BR.fl_str_mv |
1422-0067 |
dc.identifier.nrb.pt_BR.fl_str_mv |
000873753 |
identifier_str_mv |
1422-0067 000873753 |
url |
http://hdl.handle.net/10183/267687 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
International journal of molecular sciences. Basel. Vol. 13, no. 9 (June 2012), p. 11343-11348 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFRGS instname:Universidade Federal do Rio Grande do Sul (UFRGS) instacron:UFRGS |
instname_str |
Universidade Federal do Rio Grande do Sul (UFRGS) |
instacron_str |
UFRGS |
institution |
UFRGS |
reponame_str |
Repositório Institucional da UFRGS |
collection |
Repositório Institucional da UFRGS |
bitstream.url.fl_str_mv |
http://www.lume.ufrgs.br/bitstream/10183/267687/2/000873753.pdf.txt http://www.lume.ufrgs.br/bitstream/10183/267687/1/000873753.pdf |
bitstream.checksum.fl_str_mv |
1c6da234e213d021fa89e033ddd4b127 1be06278ba91344130a771d67a459793 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS) |
repository.mail.fl_str_mv |
|
_version_ |
1815447846361497600 |