Isolation and characterization of microsatellite markers for Passiflora contracta

Detalhes bibliográficos
Autor(a) principal: Cazé, Ana Luíza Ramos
Data de Publicação: 2012
Outros Autores: Kriedt, Raquel Athayde, Beheregaray, Luciano B., Bonatto, Sandro Luis, Freitas, Loreta Brandão de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/267687
Resumo: Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species.
id UFRGS-2_2a040330ea90db27dd70829541d19899
oai_identifier_str oai:www.lume.ufrgs.br:10183/267687
network_acronym_str UFRGS-2
network_name_str Repositório Institucional da UFRGS
repository_id_str
spelling Cazé, Ana Luíza RamosKriedt, Raquel AthaydeBeheregaray, Luciano B.Bonatto, Sandro LuisFreitas, Loreta Brandão de2023-11-25T03:28:05Z20121422-0067http://hdl.handle.net/10183/267687000873753Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species.application/pdfengInternational journal of molecular sciences. Basel. Vol. 13, no. 9 (June 2012), p. 11343-11348MicrossatélitePassiflora contractaNuclear microsatellitesConservation geneticsIsolation and characterization of microsatellite markers for Passiflora contractaEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT000873753.pdf.txt000873753.pdf.txtExtracted Texttext/plain14967http://www.lume.ufrgs.br/bitstream/10183/267687/2/000873753.pdf.txt1c6da234e213d021fa89e033ddd4b127MD52ORIGINAL000873753.pdfTexto completo (inglês)application/pdf163806http://www.lume.ufrgs.br/bitstream/10183/267687/1/000873753.pdf1be06278ba91344130a771d67a459793MD5110183/2676872023-12-06 04:25:41.217568oai:www.lume.ufrgs.br:10183/267687Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2023-12-06T06:25:41Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Isolation and characterization of microsatellite markers for Passiflora contracta
title Isolation and characterization of microsatellite markers for Passiflora contracta
spellingShingle Isolation and characterization of microsatellite markers for Passiflora contracta
Cazé, Ana Luíza Ramos
Microssatélite
Passiflora contracta
Nuclear microsatellites
Conservation genetics
title_short Isolation and characterization of microsatellite markers for Passiflora contracta
title_full Isolation and characterization of microsatellite markers for Passiflora contracta
title_fullStr Isolation and characterization of microsatellite markers for Passiflora contracta
title_full_unstemmed Isolation and characterization of microsatellite markers for Passiflora contracta
title_sort Isolation and characterization of microsatellite markers for Passiflora contracta
author Cazé, Ana Luíza Ramos
author_facet Cazé, Ana Luíza Ramos
Kriedt, Raquel Athayde
Beheregaray, Luciano B.
Bonatto, Sandro Luis
Freitas, Loreta Brandão de
author_role author
author2 Kriedt, Raquel Athayde
Beheregaray, Luciano B.
Bonatto, Sandro Luis
Freitas, Loreta Brandão de
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Cazé, Ana Luíza Ramos
Kriedt, Raquel Athayde
Beheregaray, Luciano B.
Bonatto, Sandro Luis
Freitas, Loreta Brandão de
dc.subject.por.fl_str_mv Microssatélite
Passiflora contracta
topic Microssatélite
Passiflora contracta
Nuclear microsatellites
Conservation genetics
dc.subject.eng.fl_str_mv Nuclear microsatellites
Conservation genetics
description Passiflora contracta Vitta (Passifloraceae) is an endemic species of the Atlantic Rainforest, one of the most species-rich ecoregions in the world, although extremely endangered. We have developed an enriched microsatellite library in order to fine-scale studies of the genetic structure of P. contracta. Twelve pairs of microsatellite primers were designed, and seven loci were successfully amplified and characterized by genotyping two wild populations of P. contracta. All seven loci were polymorphic, with an average number of alleles found being 4.8 and 5 per population. The cross-species transferability was tested using sister species Passiflora ovalis Vell. Ex Roemer. The development of these markers will contribute to the studies of population genetics in P. contracta as well as future studies concerning diversity patterns in the Atlantic Rainforest, and may also help to establish strategies for the conservation of this species.
publishDate 2012
dc.date.issued.fl_str_mv 2012
dc.date.accessioned.fl_str_mv 2023-11-25T03:28:05Z
dc.type.driver.fl_str_mv Estrangeiro
info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/267687
dc.identifier.issn.pt_BR.fl_str_mv 1422-0067
dc.identifier.nrb.pt_BR.fl_str_mv 000873753
identifier_str_mv 1422-0067
000873753
url http://hdl.handle.net/10183/267687
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv International journal of molecular sciences. Basel. Vol. 13, no. 9 (June 2012), p. 11343-11348
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRGS
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Repositório Institucional da UFRGS
collection Repositório Institucional da UFRGS
bitstream.url.fl_str_mv http://www.lume.ufrgs.br/bitstream/10183/267687/2/000873753.pdf.txt
http://www.lume.ufrgs.br/bitstream/10183/267687/1/000873753.pdf
bitstream.checksum.fl_str_mv 1c6da234e213d021fa89e033ddd4b127
1be06278ba91344130a771d67a459793
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv
_version_ 1815447846361497600