Self-supervised learning methods for label-efficient dental caries classification
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/242600 |
Resumo: | High annotation costs are a substantial bottleneck in applying deep learning architectures to clinically relevant use cases, substantiating the need for algorithms to learn from unlabeled data. In this work, we propose employing self-supervised methods. To that end, we trained with three selfsupervised algorithms on a large corpus of unlabeled dental images, which contained 38K bitewing radiographs (BWRs). We then applied the learned neural network representations on tooth-level dental caries classification, for which we utilized labels extracted from electronic health records (EHRs). Finally, a holdout test-set was established, which consisted of 343 BWRs and was annotated by three dental professionals and approved by a senior dentist. This test-set was used to evaluate the fine-tuned caries classification models. Our experimental results demonstrate the obtained gains by pretraining models using self-supervised algorithms. These include improved caries classification performance (6 p.p. increase in sensitivity) and, most importantly, improved label-efficiency. In other words, the resulting models can be fine-tuned using few labels (annotations). Our results show that using as few as 18 annotations can produce ě45% sensitivity, which is comparable to human-level diagnostic performance. This study shows that self-supervision can provide gains in medical image analysis, particularly when obtaining labels is costly and expensive. |
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Taleb, AihamRohrer, CsabaBergner, Benjamin SebastianDe Leon, GuilhermeRodrigues, Jonas de AlmeidaSchwendicke, FalkLippert, ChristophKrois, Joachim2022-07-15T04:49:39Z20222075-4418http://hdl.handle.net/10183/242600001144806High annotation costs are a substantial bottleneck in applying deep learning architectures to clinically relevant use cases, substantiating the need for algorithms to learn from unlabeled data. In this work, we propose employing self-supervised methods. To that end, we trained with three selfsupervised algorithms on a large corpus of unlabeled dental images, which contained 38K bitewing radiographs (BWRs). We then applied the learned neural network representations on tooth-level dental caries classification, for which we utilized labels extracted from electronic health records (EHRs). Finally, a holdout test-set was established, which consisted of 343 BWRs and was annotated by three dental professionals and approved by a senior dentist. This test-set was used to evaluate the fine-tuned caries classification models. Our experimental results demonstrate the obtained gains by pretraining models using self-supervised algorithms. These include improved caries classification performance (6 p.p. increase in sensitivity) and, most importantly, improved label-efficiency. In other words, the resulting models can be fine-tuned using few labels (annotations). Our results show that using as few as 18 annotations can produce ě45% sensitivity, which is comparable to human-level diagnostic performance. This study shows that self-supervision can provide gains in medical image analysis, particularly when obtaining labels is costly and expensive.application/pdfengDiagnostics. Basel. Vol. 12, no. 5 (2022), 1237, 15 p.Cárie dentáriaUnsupervised methodsSelf-supervised learningRepresentation learningDental caries classificationData driven approachesAnnotation efficient deep learningSelf-supervised learning methods for label-efficient dental caries classificationEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001144806.pdf.txt001144806.pdf.txtExtracted Texttext/plain58156http://www.lume.ufrgs.br/bitstream/10183/242600/2/001144806.pdf.txt092ca2216d269144aefa16b80bfaf2ebMD52ORIGINAL001144806.pdfTexto completo (inglês)application/pdf1013883http://www.lume.ufrgs.br/bitstream/10183/242600/1/001144806.pdf0f8835284dd3df1baab33e37231737cbMD5110183/2426002022-07-16 05:05:45.999489oai:www.lume.ufrgs.br:10183/242600Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2022-07-16T08:05:45Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Self-supervised learning methods for label-efficient dental caries classification |
title |
Self-supervised learning methods for label-efficient dental caries classification |
spellingShingle |
Self-supervised learning methods for label-efficient dental caries classification Taleb, Aiham Cárie dentária Unsupervised methods Self-supervised learning Representation learning Dental caries classification Data driven approaches Annotation efficient deep learning |
title_short |
Self-supervised learning methods for label-efficient dental caries classification |
title_full |
Self-supervised learning methods for label-efficient dental caries classification |
title_fullStr |
Self-supervised learning methods for label-efficient dental caries classification |
title_full_unstemmed |
Self-supervised learning methods for label-efficient dental caries classification |
title_sort |
Self-supervised learning methods for label-efficient dental caries classification |
author |
Taleb, Aiham |
author_facet |
Taleb, Aiham Rohrer, Csaba Bergner, Benjamin Sebastian De Leon, Guilherme Rodrigues, Jonas de Almeida Schwendicke, Falk Lippert, Christoph Krois, Joachim |
author_role |
author |
author2 |
Rohrer, Csaba Bergner, Benjamin Sebastian De Leon, Guilherme Rodrigues, Jonas de Almeida Schwendicke, Falk Lippert, Christoph Krois, Joachim |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Taleb, Aiham Rohrer, Csaba Bergner, Benjamin Sebastian De Leon, Guilherme Rodrigues, Jonas de Almeida Schwendicke, Falk Lippert, Christoph Krois, Joachim |
dc.subject.por.fl_str_mv |
Cárie dentária |
topic |
Cárie dentária Unsupervised methods Self-supervised learning Representation learning Dental caries classification Data driven approaches Annotation efficient deep learning |
dc.subject.eng.fl_str_mv |
Unsupervised methods Self-supervised learning Representation learning Dental caries classification Data driven approaches Annotation efficient deep learning |
description |
High annotation costs are a substantial bottleneck in applying deep learning architectures to clinically relevant use cases, substantiating the need for algorithms to learn from unlabeled data. In this work, we propose employing self-supervised methods. To that end, we trained with three selfsupervised algorithms on a large corpus of unlabeled dental images, which contained 38K bitewing radiographs (BWRs). We then applied the learned neural network representations on tooth-level dental caries classification, for which we utilized labels extracted from electronic health records (EHRs). Finally, a holdout test-set was established, which consisted of 343 BWRs and was annotated by three dental professionals and approved by a senior dentist. This test-set was used to evaluate the fine-tuned caries classification models. Our experimental results demonstrate the obtained gains by pretraining models using self-supervised algorithms. These include improved caries classification performance (6 p.p. increase in sensitivity) and, most importantly, improved label-efficiency. In other words, the resulting models can be fine-tuned using few labels (annotations). Our results show that using as few as 18 annotations can produce ě45% sensitivity, which is comparable to human-level diagnostic performance. This study shows that self-supervision can provide gains in medical image analysis, particularly when obtaining labels is costly and expensive. |
publishDate |
2022 |
dc.date.accessioned.fl_str_mv |
2022-07-15T04:49:39Z |
dc.date.issued.fl_str_mv |
2022 |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
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http://hdl.handle.net/10183/242600 |
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2075-4418 |
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001144806 |
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http://hdl.handle.net/10183/242600 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Diagnostics. Basel. Vol. 12, no. 5 (2022), 1237, 15 p. |
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info:eu-repo/semantics/openAccess |
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openAccess |
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