The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration

Detalhes bibliográficos
Autor(a) principal: Cabreira, Caroline
Data de Publicação: 2013
Outros Autores: Cagliari, Alexandro, Bücker Neto, Lauro, Strohm, Beatriz Wiebke, Freitas, Loreta Brandão de, Guimarães, Francismar Correa Marcelino, Nepomuceno, Alexandre Lima, Margis-Pinheiro, Márcia, Bodanese-Zanettini, Maria Helena
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/122652
Resumo: The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses.
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spelling Cabreira, CarolineCagliari, AlexandroBücker Neto, LauroStrohm, Beatriz WiebkeFreitas, Loreta Brandão deGuimarães, Francismar Correa MarcelinoNepomuceno, Alexandre LimaMargis-Pinheiro, MárciaBodanese-Zanettini, Maria Helena2015-08-21T02:35:27Z20131438-793Xhttp://hdl.handle.net/10183/122652000910838The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses.application/pdfengFunctional & Integrative Genomics. Berlim, GW. Vol. 13, no. 3 (Aug. 2013), p. 323-338Phakopsora pachyrhizi SydrowSojaLesion simulating disease (LSD)Zinc finger LSD domainSoybean expression analysisPhakopsora pachyrhizi infectionDehydration stressThe Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydrationEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL000910838.pdf000910838.pdfTexto completo (inglês)application/pdf1224618http://www.lume.ufrgs.br/bitstream/10183/122652/1/000910838.pdf26df4eba441c619cc1242ea30be24a77MD51TEXT000910838.pdf.txt000910838.pdf.txtExtracted Texttext/plain64650http://www.lume.ufrgs.br/bitstream/10183/122652/2/000910838.pdf.txt5e148ea9d68bf135eaf3ad10cd968691MD52THUMBNAIL000910838.pdf.jpg000910838.pdf.jpgGenerated Thumbnailimage/jpeg1858http://www.lume.ufrgs.br/bitstream/10183/122652/3/000910838.pdf.jpg5ac43d74818566d4738e53b8e34f5f37MD5310183/1226522021-09-18 04:42:28.99693oai:www.lume.ufrgs.br:10183/122652Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2021-09-18T07:42:28Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
title The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
spellingShingle The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
Cabreira, Caroline
Phakopsora pachyrhizi Sydrow
Soja
Lesion simulating disease (LSD)
Zinc finger LSD domain
Soybean expression analysis
Phakopsora pachyrhizi infection
Dehydration stress
title_short The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
title_full The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
title_fullStr The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
title_full_unstemmed The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
title_sort The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
author Cabreira, Caroline
author_facet Cabreira, Caroline
Cagliari, Alexandro
Bücker Neto, Lauro
Strohm, Beatriz Wiebke
Freitas, Loreta Brandão de
Guimarães, Francismar Correa Marcelino
Nepomuceno, Alexandre Lima
Margis-Pinheiro, Márcia
Bodanese-Zanettini, Maria Helena
author_role author
author2 Cagliari, Alexandro
Bücker Neto, Lauro
Strohm, Beatriz Wiebke
Freitas, Loreta Brandão de
Guimarães, Francismar Correa Marcelino
Nepomuceno, Alexandre Lima
Margis-Pinheiro, Márcia
Bodanese-Zanettini, Maria Helena
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Cabreira, Caroline
Cagliari, Alexandro
Bücker Neto, Lauro
Strohm, Beatriz Wiebke
Freitas, Loreta Brandão de
Guimarães, Francismar Correa Marcelino
Nepomuceno, Alexandre Lima
Margis-Pinheiro, Márcia
Bodanese-Zanettini, Maria Helena
dc.subject.por.fl_str_mv Phakopsora pachyrhizi Sydrow
Soja
topic Phakopsora pachyrhizi Sydrow
Soja
Lesion simulating disease (LSD)
Zinc finger LSD domain
Soybean expression analysis
Phakopsora pachyrhizi infection
Dehydration stress
dc.subject.eng.fl_str_mv Lesion simulating disease (LSD)
Zinc finger LSD domain
Soybean expression analysis
Phakopsora pachyrhizi infection
Dehydration stress
description The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses.
publishDate 2013
dc.date.issued.fl_str_mv 2013
dc.date.accessioned.fl_str_mv 2015-08-21T02:35:27Z
dc.type.driver.fl_str_mv Estrangeiro
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dc.identifier.issn.pt_BR.fl_str_mv 1438-793X
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dc.relation.ispartof.pt_BR.fl_str_mv Functional & Integrative Genomics. Berlim, GW. Vol. 13, no. 3 (Aug. 2013), p. 323-338
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