The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration
Autor(a) principal: | |
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Data de Publicação: | 2013 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/122652 |
Resumo: | The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses. |
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Cabreira, CarolineCagliari, AlexandroBücker Neto, LauroStrohm, Beatriz WiebkeFreitas, Loreta Brandão deGuimarães, Francismar Correa MarcelinoNepomuceno, Alexandre LimaMargis-Pinheiro, MárciaBodanese-Zanettini, Maria Helena2015-08-21T02:35:27Z20131438-793Xhttp://hdl.handle.net/10183/122652000910838The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses.application/pdfengFunctional & Integrative Genomics. Berlim, GW. Vol. 13, no. 3 (Aug. 2013), p. 323-338Phakopsora pachyrhizi SydrowSojaLesion simulating disease (LSD)Zinc finger LSD domainSoybean expression analysisPhakopsora pachyrhizi infectionDehydration stressThe Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydrationEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL000910838.pdf000910838.pdfTexto completo (inglês)application/pdf1224618http://www.lume.ufrgs.br/bitstream/10183/122652/1/000910838.pdf26df4eba441c619cc1242ea30be24a77MD51TEXT000910838.pdf.txt000910838.pdf.txtExtracted Texttext/plain64650http://www.lume.ufrgs.br/bitstream/10183/122652/2/000910838.pdf.txt5e148ea9d68bf135eaf3ad10cd968691MD52THUMBNAIL000910838.pdf.jpg000910838.pdf.jpgGenerated Thumbnailimage/jpeg1858http://www.lume.ufrgs.br/bitstream/10183/122652/3/000910838.pdf.jpg5ac43d74818566d4738e53b8e34f5f37MD5310183/1226522021-09-18 04:42:28.99693oai:www.lume.ufrgs.br:10183/122652Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2021-09-18T07:42:28Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
title |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
spellingShingle |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration Cabreira, Caroline Phakopsora pachyrhizi Sydrow Soja Lesion simulating disease (LSD) Zinc finger LSD domain Soybean expression analysis Phakopsora pachyrhizi infection Dehydration stress |
title_short |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
title_full |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
title_fullStr |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
title_full_unstemmed |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
title_sort |
The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to PHAKOPSORA pachyrhizi infection and dehydration |
author |
Cabreira, Caroline |
author_facet |
Cabreira, Caroline Cagliari, Alexandro Bücker Neto, Lauro Strohm, Beatriz Wiebke Freitas, Loreta Brandão de Guimarães, Francismar Correa Marcelino Nepomuceno, Alexandre Lima Margis-Pinheiro, Márcia Bodanese-Zanettini, Maria Helena |
author_role |
author |
author2 |
Cagliari, Alexandro Bücker Neto, Lauro Strohm, Beatriz Wiebke Freitas, Loreta Brandão de Guimarães, Francismar Correa Marcelino Nepomuceno, Alexandre Lima Margis-Pinheiro, Márcia Bodanese-Zanettini, Maria Helena |
author2_role |
author author author author author author author author |
dc.contributor.author.fl_str_mv |
Cabreira, Caroline Cagliari, Alexandro Bücker Neto, Lauro Strohm, Beatriz Wiebke Freitas, Loreta Brandão de Guimarães, Francismar Correa Marcelino Nepomuceno, Alexandre Lima Margis-Pinheiro, Márcia Bodanese-Zanettini, Maria Helena |
dc.subject.por.fl_str_mv |
Phakopsora pachyrhizi Sydrow Soja |
topic |
Phakopsora pachyrhizi Sydrow Soja Lesion simulating disease (LSD) Zinc finger LSD domain Soybean expression analysis Phakopsora pachyrhizi infection Dehydration stress |
dc.subject.eng.fl_str_mv |
Lesion simulating disease (LSD) Zinc finger LSD domain Soybean expression analysis Phakopsora pachyrhizi infection Dehydration stress |
description |
The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that are reported to play an important role in the hypersensitive response and programmed cell death (PCD) that are caused by biotic and abiotic stresses. In the present study, 117 putative LSD family members were identified in Viridiplantae. Genes with one, two, or three conserved LSD domains were identified. Proteins with three LSD domains were highly represented in the species analyzed and were present in basal organisms. Proteins with two LSD domains were identified only in the Embryophyte clade, and proteins possessing one LSD domain were highly represented in grass species. Expression analyses of Glycine max LSD (GmLSD) genes were performed by realtime quantitative polymerase chain reaction. The results indicated that GmLSD genes are not ubiquitously expressed in soybean organs and that their expression patterns are instead organ-dependent. The expression of the majority of GmLSD genes is modulated in soybean during Phakopsora pachyrhizi infection. In addition, the expression of some GmLSD genes is modulated in plants under dehydration stress. These results suggest the involvement of GmLSD genes in the response of soybean to both biotic and abiotic stresses. |
publishDate |
2013 |
dc.date.issued.fl_str_mv |
2013 |
dc.date.accessioned.fl_str_mv |
2015-08-21T02:35:27Z |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/122652 |
dc.identifier.issn.pt_BR.fl_str_mv |
1438-793X |
dc.identifier.nrb.pt_BR.fl_str_mv |
000910838 |
identifier_str_mv |
1438-793X 000910838 |
url |
http://hdl.handle.net/10183/122652 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Functional & Integrative Genomics. Berlim, GW. Vol. 13, no. 3 (Aug. 2013), p. 323-338 |
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info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
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