Targeted sequencing identifies novel variants in common and rare MODY genes

Detalhes bibliográficos
Autor(a) principal: Santana, Lucas Santos de
Data de Publicação: 2019
Outros Autores: Caetano, Lílian Araújo, Riquetto, Aline Dantas Costa, Franco, Pedro Campos, Reis, André Fernandes, Weinert, Letícia Schwerz, Silveiro, Sandra Pinho, Vendramini, Marcio Faleiros, Prado, Flaviene Alves, Abrahão, Giovanna Campos Paranhos, Almeida, Ana Gregória Ferreira Pereira de, Tavares, Maria da Glória Rodrigues, Gonçalves, Wagner Rodrigo Brida, Santomauro Júnior, Augusto Cézar, Halpern, Bruno, Jorge, Alexander Augusto de Lima, Nery, Márcia, Bezerra, Milena Gurgel Teles
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/217300
Resumo: Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes.
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spelling Santana, Lucas Santos deCaetano, Lílian AraújoRiquetto, Aline Dantas CostaFranco, Pedro CamposReis, André FernandesWeinert, Letícia SchwerzSilveiro, Sandra PinhoVendramini, Marcio FaleirosPrado, Flaviene AlvesAbrahão, Giovanna Campos ParanhosAlmeida, Ana Gregória Ferreira Pereira deTavares, Maria da Glória RodriguesGonçalves, Wagner Rodrigo BridaSantomauro Júnior, Augusto CézarHalpern, BrunoJorge, Alexander Augusto de LimaNery, MárciaBezerra, Milena Gurgel Teles2021-01-14T04:10:50Z20192324-9269http://hdl.handle.net/10183/217300001119715Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes.application/pdfengMolecular Genetics & Genomic Medicine. Hoboken. vol. 7, no. 12 (Dec. 2019), e962, 17 p.Diabetes mellitus tipo 2Testes genéticosMutaçãoACMG/AMPMODYMODY-XTargeted sequencingTargeted sequencing identifies novel variants in common and rare MODY genesEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001119715.pdf.txt001119715.pdf.txtExtracted Texttext/plain78389http://www.lume.ufrgs.br/bitstream/10183/217300/2/001119715.pdf.txtb397fd9c31fb92052784495cdd4786abMD52ORIGINAL001119715.pdfTexto completo (inglês)application/pdf1218057http://www.lume.ufrgs.br/bitstream/10183/217300/1/001119715.pdf09fbc13aa2d739348ce16de50f13ff3aMD5110183/2173002021-03-09 04:35:54.972839oai:www.lume.ufrgs.br:10183/217300Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2021-03-09T07:35:54Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Targeted sequencing identifies novel variants in common and rare MODY genes
title Targeted sequencing identifies novel variants in common and rare MODY genes
spellingShingle Targeted sequencing identifies novel variants in common and rare MODY genes
Santana, Lucas Santos de
Diabetes mellitus tipo 2
Testes genéticos
Mutação
ACMG/AMP
MODY
MODY-X
Targeted sequencing
title_short Targeted sequencing identifies novel variants in common and rare MODY genes
title_full Targeted sequencing identifies novel variants in common and rare MODY genes
title_fullStr Targeted sequencing identifies novel variants in common and rare MODY genes
title_full_unstemmed Targeted sequencing identifies novel variants in common and rare MODY genes
title_sort Targeted sequencing identifies novel variants in common and rare MODY genes
author Santana, Lucas Santos de
author_facet Santana, Lucas Santos de
Caetano, Lílian Araújo
Riquetto, Aline Dantas Costa
Franco, Pedro Campos
Reis, André Fernandes
Weinert, Letícia Schwerz
Silveiro, Sandra Pinho
Vendramini, Marcio Faleiros
Prado, Flaviene Alves
Abrahão, Giovanna Campos Paranhos
Almeida, Ana Gregória Ferreira Pereira de
Tavares, Maria da Glória Rodrigues
Gonçalves, Wagner Rodrigo Brida
Santomauro Júnior, Augusto Cézar
Halpern, Bruno
Jorge, Alexander Augusto de Lima
Nery, Márcia
Bezerra, Milena Gurgel Teles
author_role author
author2 Caetano, Lílian Araújo
Riquetto, Aline Dantas Costa
Franco, Pedro Campos
Reis, André Fernandes
Weinert, Letícia Schwerz
Silveiro, Sandra Pinho
Vendramini, Marcio Faleiros
Prado, Flaviene Alves
Abrahão, Giovanna Campos Paranhos
Almeida, Ana Gregória Ferreira Pereira de
Tavares, Maria da Glória Rodrigues
Gonçalves, Wagner Rodrigo Brida
Santomauro Júnior, Augusto Cézar
Halpern, Bruno
Jorge, Alexander Augusto de Lima
Nery, Márcia
Bezerra, Milena Gurgel Teles
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Santana, Lucas Santos de
Caetano, Lílian Araújo
Riquetto, Aline Dantas Costa
Franco, Pedro Campos
Reis, André Fernandes
Weinert, Letícia Schwerz
Silveiro, Sandra Pinho
Vendramini, Marcio Faleiros
Prado, Flaviene Alves
Abrahão, Giovanna Campos Paranhos
Almeida, Ana Gregória Ferreira Pereira de
Tavares, Maria da Glória Rodrigues
Gonçalves, Wagner Rodrigo Brida
Santomauro Júnior, Augusto Cézar
Halpern, Bruno
Jorge, Alexander Augusto de Lima
Nery, Márcia
Bezerra, Milena Gurgel Teles
dc.subject.por.fl_str_mv Diabetes mellitus tipo 2
Testes genéticos
Mutação
topic Diabetes mellitus tipo 2
Testes genéticos
Mutação
ACMG/AMP
MODY
MODY-X
Targeted sequencing
dc.subject.eng.fl_str_mv ACMG/AMP
MODY
MODY-X
Targeted sequencing
description Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes.
publishDate 2019
dc.date.issued.fl_str_mv 2019
dc.date.accessioned.fl_str_mv 2021-01-14T04:10:50Z
dc.type.driver.fl_str_mv Estrangeiro
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status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/217300
dc.identifier.issn.pt_BR.fl_str_mv 2324-9269
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dc.language.iso.fl_str_mv eng
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dc.relation.ispartof.pt_BR.fl_str_mv Molecular Genetics & Genomic Medicine. Hoboken. vol. 7, no. 12 (Dec. 2019), e962, 17 p.
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