Targeted sequencing identifies novel variants in common and rare MODY genes
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/217300 |
Resumo: | Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes. |
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Santana, Lucas Santos deCaetano, Lílian AraújoRiquetto, Aline Dantas CostaFranco, Pedro CamposReis, André FernandesWeinert, Letícia SchwerzSilveiro, Sandra PinhoVendramini, Marcio FaleirosPrado, Flaviene AlvesAbrahão, Giovanna Campos ParanhosAlmeida, Ana Gregória Ferreira Pereira deTavares, Maria da Glória RodriguesGonçalves, Wagner Rodrigo BridaSantomauro Júnior, Augusto CézarHalpern, BrunoJorge, Alexander Augusto de LimaNery, MárciaBezerra, Milena Gurgel Teles2021-01-14T04:10:50Z20192324-9269http://hdl.handle.net/10183/217300001119715Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes.application/pdfengMolecular Genetics & Genomic Medicine. Hoboken. vol. 7, no. 12 (Dec. 2019), e962, 17 p.Diabetes mellitus tipo 2Testes genéticosMutaçãoACMG/AMPMODYMODY-XTargeted sequencingTargeted sequencing identifies novel variants in common and rare MODY genesEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001119715.pdf.txt001119715.pdf.txtExtracted Texttext/plain78389http://www.lume.ufrgs.br/bitstream/10183/217300/2/001119715.pdf.txtb397fd9c31fb92052784495cdd4786abMD52ORIGINAL001119715.pdfTexto completo (inglês)application/pdf1218057http://www.lume.ufrgs.br/bitstream/10183/217300/1/001119715.pdf09fbc13aa2d739348ce16de50f13ff3aMD5110183/2173002021-03-09 04:35:54.972839oai:www.lume.ufrgs.br:10183/217300Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2021-03-09T07:35:54Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Targeted sequencing identifies novel variants in common and rare MODY genes |
title |
Targeted sequencing identifies novel variants in common and rare MODY genes |
spellingShingle |
Targeted sequencing identifies novel variants in common and rare MODY genes Santana, Lucas Santos de Diabetes mellitus tipo 2 Testes genéticos Mutação ACMG/AMP MODY MODY-X Targeted sequencing |
title_short |
Targeted sequencing identifies novel variants in common and rare MODY genes |
title_full |
Targeted sequencing identifies novel variants in common and rare MODY genes |
title_fullStr |
Targeted sequencing identifies novel variants in common and rare MODY genes |
title_full_unstemmed |
Targeted sequencing identifies novel variants in common and rare MODY genes |
title_sort |
Targeted sequencing identifies novel variants in common and rare MODY genes |
author |
Santana, Lucas Santos de |
author_facet |
Santana, Lucas Santos de Caetano, Lílian Araújo Riquetto, Aline Dantas Costa Franco, Pedro Campos Reis, André Fernandes Weinert, Letícia Schwerz Silveiro, Sandra Pinho Vendramini, Marcio Faleiros Prado, Flaviene Alves Abrahão, Giovanna Campos Paranhos Almeida, Ana Gregória Ferreira Pereira de Tavares, Maria da Glória Rodrigues Gonçalves, Wagner Rodrigo Brida Santomauro Júnior, Augusto Cézar Halpern, Bruno Jorge, Alexander Augusto de Lima Nery, Márcia Bezerra, Milena Gurgel Teles |
author_role |
author |
author2 |
Caetano, Lílian Araújo Riquetto, Aline Dantas Costa Franco, Pedro Campos Reis, André Fernandes Weinert, Letícia Schwerz Silveiro, Sandra Pinho Vendramini, Marcio Faleiros Prado, Flaviene Alves Abrahão, Giovanna Campos Paranhos Almeida, Ana Gregória Ferreira Pereira de Tavares, Maria da Glória Rodrigues Gonçalves, Wagner Rodrigo Brida Santomauro Júnior, Augusto Cézar Halpern, Bruno Jorge, Alexander Augusto de Lima Nery, Márcia Bezerra, Milena Gurgel Teles |
author2_role |
author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Santana, Lucas Santos de Caetano, Lílian Araújo Riquetto, Aline Dantas Costa Franco, Pedro Campos Reis, André Fernandes Weinert, Letícia Schwerz Silveiro, Sandra Pinho Vendramini, Marcio Faleiros Prado, Flaviene Alves Abrahão, Giovanna Campos Paranhos Almeida, Ana Gregória Ferreira Pereira de Tavares, Maria da Glória Rodrigues Gonçalves, Wagner Rodrigo Brida Santomauro Júnior, Augusto Cézar Halpern, Bruno Jorge, Alexander Augusto de Lima Nery, Márcia Bezerra, Milena Gurgel Teles |
dc.subject.por.fl_str_mv |
Diabetes mellitus tipo 2 Testes genéticos Mutação |
topic |
Diabetes mellitus tipo 2 Testes genéticos Mutação ACMG/AMP MODY MODY-X Targeted sequencing |
dc.subject.eng.fl_str_mv |
ACMG/AMP MODY MODY-X Targeted sequencing |
description |
Background: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). Methods: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. Results: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. Conclusion: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes. |
publishDate |
2019 |
dc.date.issued.fl_str_mv |
2019 |
dc.date.accessioned.fl_str_mv |
2021-01-14T04:10:50Z |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/217300 |
dc.identifier.issn.pt_BR.fl_str_mv |
2324-9269 |
dc.identifier.nrb.pt_BR.fl_str_mv |
001119715 |
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2324-9269 001119715 |
url |
http://hdl.handle.net/10183/217300 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Molecular Genetics & Genomic Medicine. Hoboken. vol. 7, no. 12 (Dec. 2019), e962, 17 p. |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
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application/pdf |
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