The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress

Detalhes bibliográficos
Autor(a) principal: Granada, Camille Eichelberger
Data de Publicação: 2018
Outros Autores: Vargas, Luciano Kayser, Sant'Anna, Fernando Hayashi, Balsanelli, Eduardo, Baura, Valter Antonio de, Pedrosa, Fábio de Oliveira, Souza, Emanuel Maltempi de, Lopes, Tiago Falcón, Passaglia, Luciane Maria Pereira
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/183873
Resumo: Lupinus albescens is a resistant cover plant that establishes symbiotic relationships with bacteria belonging to the Bradyrhizobium genus. This symbiosis helps the development of these plants in adverse environmental conditions, such as the ones found in arenized areas of Southern Brazil. This work studied three Bradyrhizobium sp. (AS23, NAS80 and NAS96) isolated from L. albescens plants that grow in extremely poor soils (arenized areas and adjacent grasslands). The genomes of these three strains were sequenced in the Ion Torrent platform using the IonXpress library preparation kit, and presented a total number of bases of 1,230,460,823 for AS23, 1,320,104,022 for NAS80, and 1,236,105,093 for NAS96. The genome comparison with closest strains Bradyrhizobium japonicum USDA6 and Bradyrhizobium diazoefficiens USDA110 showed important variable regions (with less than 80% of similarity). Genes encoding for factors for resistance/tolerance to heavy metal, flagellar motility, response to osmotic and oxidative stresses, heat shock proteins (present only in the three sequenced genomes) could be responsible for the ability of these microorganisms to survive in inhospitable environments. Knowledge about these genomes will provide a foundation for future development of an inoculant bioproduct that should optimize the recovery of degraded soils using cover crops.
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spelling Granada, Camille EichelbergerVargas, Luciano KayserSant'Anna, Fernando HayashiBalsanelli, EduardoBaura, Valter Antonio dePedrosa, Fábio de OliveiraSouza, Emanuel Maltempi deLopes, Tiago FalcónPassaglia, Luciane Maria Pereira2018-10-23T02:40:59Z20181415-4757http://hdl.handle.net/10183/183873001073196Lupinus albescens is a resistant cover plant that establishes symbiotic relationships with bacteria belonging to the Bradyrhizobium genus. This symbiosis helps the development of these plants in adverse environmental conditions, such as the ones found in arenized areas of Southern Brazil. This work studied three Bradyrhizobium sp. (AS23, NAS80 and NAS96) isolated from L. albescens plants that grow in extremely poor soils (arenized areas and adjacent grasslands). The genomes of these three strains were sequenced in the Ion Torrent platform using the IonXpress library preparation kit, and presented a total number of bases of 1,230,460,823 for AS23, 1,320,104,022 for NAS80, and 1,236,105,093 for NAS96. The genome comparison with closest strains Bradyrhizobium japonicum USDA6 and Bradyrhizobium diazoefficiens USDA110 showed important variable regions (with less than 80% of similarity). Genes encoding for factors for resistance/tolerance to heavy metal, flagellar motility, response to osmotic and oxidative stresses, heat shock proteins (present only in the three sequenced genomes) could be responsible for the ability of these microorganisms to survive in inhospitable environments. Knowledge about these genomes will provide a foundation for future development of an inoculant bioproduct that should optimize the recovery of degraded soils using cover crops.application/pdfengGenetics and molecular biology. Ribeirão Preto, SP. Vol. 41, no. 2 (Jun. 2018), p. 502-506.LupinusBradyrhizobiumBradyrhizobium sp.arenized areaspoor soilsresistant bacteriaThe genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stressinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL001073196.pdfTexto completo (inglês)application/pdf3102764http://www.lume.ufrgs.br/bitstream/10183/183873/1/001073196.pdf6f4a1e962045c85f8767f4c5fb5b15cfMD51TEXT001073196.pdf.txt001073196.pdf.txtExtracted Texttext/plain17198http://www.lume.ufrgs.br/bitstream/10183/183873/2/001073196.pdf.txtb5833133720b783d49fc9b32c83a8228MD52THUMBNAIL001073196.pdf.jpg001073196.pdf.jpgGenerated Thumbnailimage/jpeg1799http://www.lume.ufrgs.br/bitstream/10183/183873/3/001073196.pdf.jpge4f6f5a0693c9fd2d32d4ded4eca2eb7MD5310183/1838732018-10-24 02:43:42.242294oai:www.lume.ufrgs.br:10183/183873Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2018-10-24T05:43:42Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
title The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
spellingShingle The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
Granada, Camille Eichelberger
Lupinus
Bradyrhizobium
Bradyrhizobium sp.
arenized areas
poor soils
resistant bacteria
title_short The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
title_full The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
title_fullStr The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
title_full_unstemmed The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
title_sort The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
author Granada, Camille Eichelberger
author_facet Granada, Camille Eichelberger
Vargas, Luciano Kayser
Sant'Anna, Fernando Hayashi
Balsanelli, Eduardo
Baura, Valter Antonio de
Pedrosa, Fábio de Oliveira
Souza, Emanuel Maltempi de
Lopes, Tiago Falcón
Passaglia, Luciane Maria Pereira
author_role author
author2 Vargas, Luciano Kayser
Sant'Anna, Fernando Hayashi
Balsanelli, Eduardo
Baura, Valter Antonio de
Pedrosa, Fábio de Oliveira
Souza, Emanuel Maltempi de
Lopes, Tiago Falcón
Passaglia, Luciane Maria Pereira
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Granada, Camille Eichelberger
Vargas, Luciano Kayser
Sant'Anna, Fernando Hayashi
Balsanelli, Eduardo
Baura, Valter Antonio de
Pedrosa, Fábio de Oliveira
Souza, Emanuel Maltempi de
Lopes, Tiago Falcón
Passaglia, Luciane Maria Pereira
dc.subject.por.fl_str_mv Lupinus
Bradyrhizobium
topic Lupinus
Bradyrhizobium
Bradyrhizobium sp.
arenized areas
poor soils
resistant bacteria
dc.subject.eng.fl_str_mv Bradyrhizobium sp.
arenized areas
poor soils
resistant bacteria
description Lupinus albescens is a resistant cover plant that establishes symbiotic relationships with bacteria belonging to the Bradyrhizobium genus. This symbiosis helps the development of these plants in adverse environmental conditions, such as the ones found in arenized areas of Southern Brazil. This work studied three Bradyrhizobium sp. (AS23, NAS80 and NAS96) isolated from L. albescens plants that grow in extremely poor soils (arenized areas and adjacent grasslands). The genomes of these three strains were sequenced in the Ion Torrent platform using the IonXpress library preparation kit, and presented a total number of bases of 1,230,460,823 for AS23, 1,320,104,022 for NAS80, and 1,236,105,093 for NAS96. The genome comparison with closest strains Bradyrhizobium japonicum USDA6 and Bradyrhizobium diazoefficiens USDA110 showed important variable regions (with less than 80% of similarity). Genes encoding for factors for resistance/tolerance to heavy metal, flagellar motility, response to osmotic and oxidative stresses, heat shock proteins (present only in the three sequenced genomes) could be responsible for the ability of these microorganisms to survive in inhospitable environments. Knowledge about these genomes will provide a foundation for future development of an inoculant bioproduct that should optimize the recovery of degraded soils using cover crops.
publishDate 2018
dc.date.accessioned.fl_str_mv 2018-10-23T02:40:59Z
dc.date.issued.fl_str_mv 2018
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dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/183873
dc.identifier.issn.pt_BR.fl_str_mv 1415-4757
dc.identifier.nrb.pt_BR.fl_str_mv 001073196
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dc.language.iso.fl_str_mv eng
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dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto, SP. Vol. 41, no. 2 (Jun. 2018), p. 502-506.
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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