Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs

Detalhes bibliográficos
Autor(a) principal: Waschburger, Edgar Luis
Data de Publicação: 2018
Outros Autores: Kulcheski, Franceli Rodrigues, Veto, Nicole Moreira, Margis, Rogerio, Margis-Pinheiro, Márcia, Zolet, Andreia Carina Turchetto
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/183954
Resumo: sn-Glycerol-3-phosphate 1-O-acyltransferase (GPAT) is an important enzyme that catalyzes the transfer of an acyl group from acyl-CoA or acyl-ACP to the sn-1 or sn-2 position of sn-glycerol-3-phosphate (G3P) to generate lysophosphatidic acids (LPAs). The functional studies of GPAT in plants demonstrated its importance in controlling storage and membrane lipid. Identifying genes encoding GPAT in a variety of plant species is crucial to understand their involvement in different metabolic pathways and physiological functions. Here, we performed genome-wide and evolutionary analyses of GPATs in plants. GPAT genes were identified in all algae and plants studied. The phylogenetic analysis showed that these genes group into three main clades. While clades I (GPAT9) and II (soluble GPAT) include GPATs from algae and plants, clade III (GPAT1-8) includes GPATs specific from plants that are involved in the biosynthesis of cutin or suberin. Gene organization and the expression pattern of GPATs in plants corroborate with clade formation in the phylogeny, suggesting that the evolutionary patterns is reflected in their functionality. Overall, our results provide important insights into the evolution of the plant GPATs and allowed us to explore the evolutionary mechanism underlying the functional diversification among these genes.
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spelling Waschburger, Edgar LuisKulcheski, Franceli RodriguesVeto, Nicole MoreiraMargis, RogerioMargis-Pinheiro, MárciaZolet, Andreia Carina Turchetto2018-10-24T02:44:03Z20181415-4757http://hdl.handle.net/10183/183954001073642sn-Glycerol-3-phosphate 1-O-acyltransferase (GPAT) is an important enzyme that catalyzes the transfer of an acyl group from acyl-CoA or acyl-ACP to the sn-1 or sn-2 position of sn-glycerol-3-phosphate (G3P) to generate lysophosphatidic acids (LPAs). The functional studies of GPAT in plants demonstrated its importance in controlling storage and membrane lipid. Identifying genes encoding GPAT in a variety of plant species is crucial to understand their involvement in different metabolic pathways and physiological functions. Here, we performed genome-wide and evolutionary analyses of GPATs in plants. GPAT genes were identified in all algae and plants studied. The phylogenetic analysis showed that these genes group into three main clades. While clades I (GPAT9) and II (soluble GPAT) include GPATs from algae and plants, clade III (GPAT1-8) includes GPATs specific from plants that are involved in the biosynthesis of cutin or suberin. Gene organization and the expression pattern of GPATs in plants corroborate with clade formation in the phylogeny, suggesting that the evolutionary patterns is reflected in their functionality. Overall, our results provide important insights into the evolution of the plant GPATs and allowed us to explore the evolutionary mechanism underlying the functional diversification among these genes.application/pdfengGenetics and molecular biology. Ribeirão Preto, SP. Vol. 41, no. 1 suppl (mar. 2018), p. 353-370.LipídiosFilogeniaGlicerolGenética vegetalPlant lipidsGPAT enzymesPhylogenyEvolutionGene expressionGenome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATsinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL001073642.pdfTexto completo (inglês)application/pdf6457994http://www.lume.ufrgs.br/bitstream/10183/183954/1/001073642.pdfbbfe49a66602b1d7fef048f1bb77db8aMD51TEXT001073642.pdf.txt001073642.pdf.txtExtracted Texttext/plain58837http://www.lume.ufrgs.br/bitstream/10183/183954/2/001073642.pdf.txt6e6f4c67c7188ea0f2051ac4e99a4d30MD52THUMBNAIL001073642.pdf.jpg001073642.pdf.jpgGenerated Thumbnailimage/jpeg1912http://www.lume.ufrgs.br/bitstream/10183/183954/3/001073642.pdf.jpg47e4dce7ff22d2d0616441765f3b9dfdMD5310183/1839542019-08-21 02:31:01.532047oai:www.lume.ufrgs.br:10183/183954Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2019-08-21T05:31:01Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
title Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
spellingShingle Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
Waschburger, Edgar Luis
Lipídios
Filogenia
Glicerol
Genética vegetal
Plant lipids
GPAT enzymes
Phylogeny
Evolution
Gene expression
title_short Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
title_full Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
title_fullStr Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
title_full_unstemmed Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
title_sort Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs
author Waschburger, Edgar Luis
author_facet Waschburger, Edgar Luis
Kulcheski, Franceli Rodrigues
Veto, Nicole Moreira
Margis, Rogerio
Margis-Pinheiro, Márcia
Zolet, Andreia Carina Turchetto
author_role author
author2 Kulcheski, Franceli Rodrigues
Veto, Nicole Moreira
Margis, Rogerio
Margis-Pinheiro, Márcia
Zolet, Andreia Carina Turchetto
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Waschburger, Edgar Luis
Kulcheski, Franceli Rodrigues
Veto, Nicole Moreira
Margis, Rogerio
Margis-Pinheiro, Márcia
Zolet, Andreia Carina Turchetto
dc.subject.por.fl_str_mv Lipídios
Filogenia
Glicerol
Genética vegetal
topic Lipídios
Filogenia
Glicerol
Genética vegetal
Plant lipids
GPAT enzymes
Phylogeny
Evolution
Gene expression
dc.subject.eng.fl_str_mv Plant lipids
GPAT enzymes
Phylogeny
Evolution
Gene expression
description sn-Glycerol-3-phosphate 1-O-acyltransferase (GPAT) is an important enzyme that catalyzes the transfer of an acyl group from acyl-CoA or acyl-ACP to the sn-1 or sn-2 position of sn-glycerol-3-phosphate (G3P) to generate lysophosphatidic acids (LPAs). The functional studies of GPAT in plants demonstrated its importance in controlling storage and membrane lipid. Identifying genes encoding GPAT in a variety of plant species is crucial to understand their involvement in different metabolic pathways and physiological functions. Here, we performed genome-wide and evolutionary analyses of GPATs in plants. GPAT genes were identified in all algae and plants studied. The phylogenetic analysis showed that these genes group into three main clades. While clades I (GPAT9) and II (soluble GPAT) include GPATs from algae and plants, clade III (GPAT1-8) includes GPATs specific from plants that are involved in the biosynthesis of cutin or suberin. Gene organization and the expression pattern of GPATs in plants corroborate with clade formation in the phylogeny, suggesting that the evolutionary patterns is reflected in their functionality. Overall, our results provide important insights into the evolution of the plant GPATs and allowed us to explore the evolutionary mechanism underlying the functional diversification among these genes.
publishDate 2018
dc.date.accessioned.fl_str_mv 2018-10-24T02:44:03Z
dc.date.issued.fl_str_mv 2018
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dc.identifier.nrb.pt_BR.fl_str_mv 001073642
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dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto, SP. Vol. 41, no. 1 suppl (mar. 2018), p. 353-370.
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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