Evolutionary and structural aspects of Solanaceae RNases T2

Detalhes bibliográficos
Autor(a) principal: Thompson, Claudia Elizabeth
Data de Publicação: 2023
Outros Autores: Corrêa, Lauís Brisolara, Thompson, Helen Nathalia, Stassen, Hubert Karl, Freitas, Loreta Brandão de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/266582
Resumo: Plant RNases T2 are involved in several physiological and developmental processes, including inorganic phosphate starvation, senescence, wounding, defense against pathogens, and the self-incompatibility system. Solanaceae RNases form three main clades, one composed exclusively of S-RNases and two that include S-like RNases. We identified several positively selected amino acids located in highly flexible regions of these molecules, mainly close to the B1 and B2 substrate-binding sites in S-like RNases and the hypervariable regions of S-RNases. These differences between S- and S-like RNases in the flexibility of amino acids in substrate-binding regions are essential to understand the RNA-binding process. For example, in the S-like RNase NT, two positively selected amino acid residues (Tyr156 and Asn134) are located at the most flexible sites on the molecular surface. RNase NT is induced in response to tobacco mosaic virus infection; these sites may thus be regions of interaction with pathogen proteins or viral RNA. Differential selective pressures acting on plant ribonucleases have increased amino acid variability and, consequently, structural differences within and among S-like RNases and S-RNases that seem to be essential for these proteins play different functions.
id UFRGS-2_ab10bf9aaeaa161160647335f5da393f
oai_identifier_str oai:www.lume.ufrgs.br:10183/266582
network_acronym_str UFRGS-2
network_name_str Repositório Institucional da UFRGS
repository_id_str
spelling Thompson, Claudia ElizabethCorrêa, Lauís BrisolaraThompson, Helen NathaliaStassen, Hubert KarlFreitas, Loreta Brandão de2023-11-04T03:31:52Z20231415-4757http://hdl.handle.net/10183/266582001170544Plant RNases T2 are involved in several physiological and developmental processes, including inorganic phosphate starvation, senescence, wounding, defense against pathogens, and the self-incompatibility system. Solanaceae RNases form three main clades, one composed exclusively of S-RNases and two that include S-like RNases. We identified several positively selected amino acids located in highly flexible regions of these molecules, mainly close to the B1 and B2 substrate-binding sites in S-like RNases and the hypervariable regions of S-RNases. These differences between S- and S-like RNases in the flexibility of amino acids in substrate-binding regions are essential to understand the RNA-binding process. For example, in the S-like RNase NT, two positively selected amino acid residues (Tyr156 and Asn134) are located at the most flexible sites on the molecular surface. RNase NT is induced in response to tobacco mosaic virus infection; these sites may thus be regions of interaction with pathogen proteins or viral RNA. Differential selective pressures acting on plant ribonucleases have increased amino acid variability and, consequently, structural differences within and among S-like RNases and S-RNases that seem to be essential for these proteins play different functions.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 46, no. 1 suppl. 1 (2023), e20220115, 15 p.Ribonucleases T2SolanaceaeFunctional diversificationStructural biologyEvolutionary and structural aspects of Solanaceae RNases T2info:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001170544.pdf.txt001170544.pdf.txtExtracted Texttext/plain66700http://www.lume.ufrgs.br/bitstream/10183/266582/2/001170544.pdf.txt7129a6d98fb3061c7bed371c8a8a084eMD52ORIGINAL001170544.pdfTexto completo (inglês)application/pdf8793813http://www.lume.ufrgs.br/bitstream/10183/266582/1/001170544.pdf3dba40e7ae0349b29c050d3ca4e9a2e9MD5110183/2665822024-05-23 06:42:36.837216oai:www.lume.ufrgs.br:10183/266582Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2024-05-23T09:42:36Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Evolutionary and structural aspects of Solanaceae RNases T2
title Evolutionary and structural aspects of Solanaceae RNases T2
spellingShingle Evolutionary and structural aspects of Solanaceae RNases T2
Thompson, Claudia Elizabeth
Ribonucleases T2
Solanaceae
Functional diversification
Structural biology
title_short Evolutionary and structural aspects of Solanaceae RNases T2
title_full Evolutionary and structural aspects of Solanaceae RNases T2
title_fullStr Evolutionary and structural aspects of Solanaceae RNases T2
title_full_unstemmed Evolutionary and structural aspects of Solanaceae RNases T2
title_sort Evolutionary and structural aspects of Solanaceae RNases T2
author Thompson, Claudia Elizabeth
author_facet Thompson, Claudia Elizabeth
Corrêa, Lauís Brisolara
Thompson, Helen Nathalia
Stassen, Hubert Karl
Freitas, Loreta Brandão de
author_role author
author2 Corrêa, Lauís Brisolara
Thompson, Helen Nathalia
Stassen, Hubert Karl
Freitas, Loreta Brandão de
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Thompson, Claudia Elizabeth
Corrêa, Lauís Brisolara
Thompson, Helen Nathalia
Stassen, Hubert Karl
Freitas, Loreta Brandão de
dc.subject.por.fl_str_mv Ribonucleases T2
Solanaceae
topic Ribonucleases T2
Solanaceae
Functional diversification
Structural biology
dc.subject.eng.fl_str_mv Functional diversification
Structural biology
description Plant RNases T2 are involved in several physiological and developmental processes, including inorganic phosphate starvation, senescence, wounding, defense against pathogens, and the self-incompatibility system. Solanaceae RNases form three main clades, one composed exclusively of S-RNases and two that include S-like RNases. We identified several positively selected amino acids located in highly flexible regions of these molecules, mainly close to the B1 and B2 substrate-binding sites in S-like RNases and the hypervariable regions of S-RNases. These differences between S- and S-like RNases in the flexibility of amino acids in substrate-binding regions are essential to understand the RNA-binding process. For example, in the S-like RNase NT, two positively selected amino acid residues (Tyr156 and Asn134) are located at the most flexible sites on the molecular surface. RNase NT is induced in response to tobacco mosaic virus infection; these sites may thus be regions of interaction with pathogen proteins or viral RNA. Differential selective pressures acting on plant ribonucleases have increased amino acid variability and, consequently, structural differences within and among S-like RNases and S-RNases that seem to be essential for these proteins play different functions.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-11-04T03:31:52Z
dc.date.issued.fl_str_mv 2023
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/other
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/266582
dc.identifier.issn.pt_BR.fl_str_mv 1415-4757
dc.identifier.nrb.pt_BR.fl_str_mv 001170544
identifier_str_mv 1415-4757
001170544
url http://hdl.handle.net/10183/266582
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto. Vol. 46, no. 1 suppl. 1 (2023), e20220115, 15 p.
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRGS
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Repositório Institucional da UFRGS
collection Repositório Institucional da UFRGS
bitstream.url.fl_str_mv http://www.lume.ufrgs.br/bitstream/10183/266582/2/001170544.pdf.txt
http://www.lume.ufrgs.br/bitstream/10183/266582/1/001170544.pdf
bitstream.checksum.fl_str_mv 7129a6d98fb3061c7bed371c8a8a084e
3dba40e7ae0349b29c050d3ca4e9a2e9
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv
_version_ 1801225102525726720