Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
Autor(a) principal: | |
---|---|
Data de Publicação: | 2005 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/23374 |
Resumo: | The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species. |
id |
UFRGS-2_c867b3f9d692ba092773e2ea08c9678f |
---|---|
oai_identifier_str |
oai:www.lume.ufrgs.br:10183/23374 |
network_acronym_str |
UFRGS-2 |
network_name_str |
Repositório Institucional da UFRGS |
repository_id_str |
|
spelling |
Ruas, Claudete de FátimaVanzela, André Luis LaforgaSantos, Melissa O.Fregonezi, Jeferson NunesRuas, Paulo MaurícioMatzenbacher, Nelson IvoAguiar-Perecin, Margarida L. R. de2010-06-05T04:17:22Z20051415-4757http://hdl.handle.net/10183/23374000514844The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 28, no. 1 (Mar. 2005), p. 129-139FilogenéticaAsteraceaeChromosome bandingFISHHypochaerisPhylogenetic relationshipRAPDChromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazilinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL000514844.pdf000514844.pdfTexto completo (inglês)application/pdf278317http://www.lume.ufrgs.br/bitstream/10183/23374/1/000514844.pdfb0a0d5f1aac4853dbeacbb3ed27de177MD51TEXT000514844.pdf.txt000514844.pdf.txtExtracted Texttext/plain44622http://www.lume.ufrgs.br/bitstream/10183/23374/2/000514844.pdf.txt3ebcdb73b707d2e8175cb729ed4b1b41MD52THUMBNAIL000514844.pdf.jpg000514844.pdf.jpgGenerated Thumbnailimage/jpeg1953http://www.lume.ufrgs.br/bitstream/10183/23374/3/000514844.pdf.jpg4694236a35d4d8a38beed6a16ca37246MD5310183/233742018-10-09 07:59:00.56oai:www.lume.ufrgs.br:10183/23374Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2018-10-09T10:59Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
title |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
spellingShingle |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil Ruas, Claudete de Fátima Filogenética Asteraceae Chromosome banding FISH Hypochaeris Phylogenetic relationship RAPD |
title_short |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
title_full |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
title_fullStr |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
title_full_unstemmed |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
title_sort |
Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil |
author |
Ruas, Claudete de Fátima |
author_facet |
Ruas, Claudete de Fátima Vanzela, André Luis Laforga Santos, Melissa O. Fregonezi, Jeferson Nunes Ruas, Paulo Maurício Matzenbacher, Nelson Ivo Aguiar-Perecin, Margarida L. R. de |
author_role |
author |
author2 |
Vanzela, André Luis Laforga Santos, Melissa O. Fregonezi, Jeferson Nunes Ruas, Paulo Maurício Matzenbacher, Nelson Ivo Aguiar-Perecin, Margarida L. R. de |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Ruas, Claudete de Fátima Vanzela, André Luis Laforga Santos, Melissa O. Fregonezi, Jeferson Nunes Ruas, Paulo Maurício Matzenbacher, Nelson Ivo Aguiar-Perecin, Margarida L. R. de |
dc.subject.por.fl_str_mv |
Filogenética Asteraceae |
topic |
Filogenética Asteraceae Chromosome banding FISH Hypochaeris Phylogenetic relationship RAPD |
dc.subject.eng.fl_str_mv |
Chromosome banding FISH Hypochaeris Phylogenetic relationship RAPD |
description |
The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species. |
publishDate |
2005 |
dc.date.issued.fl_str_mv |
2005 |
dc.date.accessioned.fl_str_mv |
2010-06-05T04:17:22Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/other |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/23374 |
dc.identifier.issn.pt_BR.fl_str_mv |
1415-4757 |
dc.identifier.nrb.pt_BR.fl_str_mv |
000514844 |
identifier_str_mv |
1415-4757 000514844 |
url |
http://hdl.handle.net/10183/23374 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Genetics and molecular biology. Ribeirão Preto. Vol. 28, no. 1 (Mar. 2005), p. 129-139 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFRGS instname:Universidade Federal do Rio Grande do Sul (UFRGS) instacron:UFRGS |
instname_str |
Universidade Federal do Rio Grande do Sul (UFRGS) |
instacron_str |
UFRGS |
institution |
UFRGS |
reponame_str |
Repositório Institucional da UFRGS |
collection |
Repositório Institucional da UFRGS |
bitstream.url.fl_str_mv |
http://www.lume.ufrgs.br/bitstream/10183/23374/1/000514844.pdf http://www.lume.ufrgs.br/bitstream/10183/23374/2/000514844.pdf.txt http://www.lume.ufrgs.br/bitstream/10183/23374/3/000514844.pdf.jpg |
bitstream.checksum.fl_str_mv |
b0a0d5f1aac4853dbeacbb3ed27de177 3ebcdb73b707d2e8175cb729ed4b1b41 4694236a35d4d8a38beed6a16ca37246 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS) |
repository.mail.fl_str_mv |
|
_version_ |
1815447415720771584 |