Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil

Detalhes bibliográficos
Autor(a) principal: Ruas, Claudete de Fátima
Data de Publicação: 2005
Outros Autores: Vanzela, André Luis Laforga, Santos, Melissa O., Fregonezi, Jeferson Nunes, Ruas, Paulo Maurício, Matzenbacher, Nelson Ivo, Aguiar-Perecin, Margarida L. R. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRGS
Texto Completo: http://hdl.handle.net/10183/23374
Resumo: The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species.
id UFRGS-2_c867b3f9d692ba092773e2ea08c9678f
oai_identifier_str oai:www.lume.ufrgs.br:10183/23374
network_acronym_str UFRGS-2
network_name_str Repositório Institucional da UFRGS
repository_id_str
spelling Ruas, Claudete de FátimaVanzela, André Luis LaforgaSantos, Melissa O.Fregonezi, Jeferson NunesRuas, Paulo MaurícioMatzenbacher, Nelson IvoAguiar-Perecin, Margarida L. R. de2010-06-05T04:17:22Z20051415-4757http://hdl.handle.net/10183/23374000514844The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species.application/pdfengGenetics and molecular biology. Ribeirão Preto. Vol. 28, no. 1 (Mar. 2005), p. 129-139FilogenéticaAsteraceaeChromosome bandingFISHHypochaerisPhylogenetic relationshipRAPDChromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazilinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/otherinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSORIGINAL000514844.pdf000514844.pdfTexto completo (inglês)application/pdf278317http://www.lume.ufrgs.br/bitstream/10183/23374/1/000514844.pdfb0a0d5f1aac4853dbeacbb3ed27de177MD51TEXT000514844.pdf.txt000514844.pdf.txtExtracted Texttext/plain44622http://www.lume.ufrgs.br/bitstream/10183/23374/2/000514844.pdf.txt3ebcdb73b707d2e8175cb729ed4b1b41MD52THUMBNAIL000514844.pdf.jpg000514844.pdf.jpgGenerated Thumbnailimage/jpeg1953http://www.lume.ufrgs.br/bitstream/10183/23374/3/000514844.pdf.jpg4694236a35d4d8a38beed6a16ca37246MD5310183/233742018-10-09 07:59:00.56oai:www.lume.ufrgs.br:10183/23374Repositório de PublicaçõesPUBhttps://lume.ufrgs.br/oai/requestopendoar:2018-10-09T10:59Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.pt_BR.fl_str_mv Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
title Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
spellingShingle Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
Ruas, Claudete de Fátima
Filogenética
Asteraceae
Chromosome banding
FISH
Hypochaeris
Phylogenetic relationship
RAPD
title_short Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
title_full Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
title_fullStr Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
title_full_unstemmed Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
title_sort Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil
author Ruas, Claudete de Fátima
author_facet Ruas, Claudete de Fátima
Vanzela, André Luis Laforga
Santos, Melissa O.
Fregonezi, Jeferson Nunes
Ruas, Paulo Maurício
Matzenbacher, Nelson Ivo
Aguiar-Perecin, Margarida L. R. de
author_role author
author2 Vanzela, André Luis Laforga
Santos, Melissa O.
Fregonezi, Jeferson Nunes
Ruas, Paulo Maurício
Matzenbacher, Nelson Ivo
Aguiar-Perecin, Margarida L. R. de
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ruas, Claudete de Fátima
Vanzela, André Luis Laforga
Santos, Melissa O.
Fregonezi, Jeferson Nunes
Ruas, Paulo Maurício
Matzenbacher, Nelson Ivo
Aguiar-Perecin, Margarida L. R. de
dc.subject.por.fl_str_mv Filogenética
Asteraceae
topic Filogenética
Asteraceae
Chromosome banding
FISH
Hypochaeris
Phylogenetic relationship
RAPD
dc.subject.eng.fl_str_mv Chromosome banding
FISH
Hypochaeris
Phylogenetic relationship
RAPD
description The association of cytogenetic and molecular techniques has contributed to the analysis of chromosome organization and phylogeny in plants. The fluorochrome GC-specific CMA3, fluorescent in situ hybridization (FISH) and RAPD (Random Amplified Polymorphic DNA) markers were used to investigate chromosome structure and genetic relationships in Hypochaeris (Asteraceae). Seven species native to South America, and two species introduced from Europe (H. glabra and Hypochaeris sp) were studied. FISH with rDNA probes identified one or two loci of 18S-5.8S-25S rDNA in the South American Hypochaeris species and one locus in the European species. Only one 5S rDNA locus was seen in all species studied. Blocks of GC-rich heterochromatin (CMA-positive bands) associated to 18S-5.8S-25SrDNA loci were detected in all species investigated. Co-location of 5S rDNA and CMA bands was also observed, except for three South American species and Hypochaeris sp. In two South American species, additional CMA bands not related to rDNA were observed on the long arm of chromosome 2, near to the centromere. Hypochaeris glabra exhibited additional CMA-positive signals distributed at pericentromeric regions, on the short arms of all chromosomes. A total of 122 RAPD markers were used to determine the genetic relationships among species. The level of polymorphism was very high, revealing two genetic groups comprising the South American and the European species, thus supporting a previous hypothesis of monophyly of the South American Hypochaeris species. The coefficients of genetic similarity between European and South American species were 0.35, on average. Polymorphism was also high within the two groups. The genetic associations observed with RAPD markers were consistent with chromosome characteristics. Species carrying similar distribution of 45S rDNA loci and CMA-positive signals were included in the same group revealed by RAPDs. Cytogenetic and molecular data support the view that not only chromosome rearrangements, but also changes in DNA sequence took place during the diversification of the South American Hypochaeris species.
publishDate 2005
dc.date.issued.fl_str_mv 2005
dc.date.accessioned.fl_str_mv 2010-06-05T04:17:22Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/other
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10183/23374
dc.identifier.issn.pt_BR.fl_str_mv 1415-4757
dc.identifier.nrb.pt_BR.fl_str_mv 000514844
identifier_str_mv 1415-4757
000514844
url http://hdl.handle.net/10183/23374
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Genetics and molecular biology. Ribeirão Preto. Vol. 28, no. 1 (Mar. 2005), p. 129-139
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFRGS
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Repositório Institucional da UFRGS
collection Repositório Institucional da UFRGS
bitstream.url.fl_str_mv http://www.lume.ufrgs.br/bitstream/10183/23374/1/000514844.pdf
http://www.lume.ufrgs.br/bitstream/10183/23374/2/000514844.pdf.txt
http://www.lume.ufrgs.br/bitstream/10183/23374/3/000514844.pdf.jpg
bitstream.checksum.fl_str_mv b0a0d5f1aac4853dbeacbb3ed27de177
3ebcdb73b707d2e8175cb729ed4b1b41
4694236a35d4d8a38beed6a16ca37246
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv
_version_ 1815447415720771584