Compositionality and overlapping in biomedical terminology: alternatives for health interoperability

Detalhes bibliográficos
Autor(a) principal: Teixeira, Livia Marangon Duffles
Data de Publicação: 2020
Outros Autores: Almeida, Mauricio Barcellos
Tipo de documento: Artigo
Idioma: por
Título da fonte: Em Questão (Online)
Texto Completo: https://seer.ufrgs.br/index.php/EmQuestao/article/view/98128
Resumo: A paramount information source within clinical practice is the patient record , an information-filled document that already exists in electronic format. The inherint inherent ambiguity of theThe ambiguity inherent in medical discourse has hampered the much sought-after automatic integration between electronic health records since, at this stage, automated systems are unable to address the syntactic and semantic complexity of the human language. Even standard terminologies designed to address such complexity are unable to solve the issues involved because of the multiplicity of alternatives, in addition to the fact that they are created for different purposes and goals. All this has resulted in redundancy, rework, and overlapping between terms. This paper assumes that the issue of interoperability is complex and needs to be tackled on several fronts. One of these fronts, in the context of electronic healthcare records, involves two conceptual conditions: epistemological overlapping and term compositionality. After explaining those conditions, we make use of an ontology-based model created on previous research to design and to test a method that aims to compensate for the shortcomings of such conditions. The test was performed on a fragment of the International Classification of Diseases. We found that the aforementioned conceptual conditions are relevant aspects to be faced in seeking interoperability.
id UFRGS-8_2ce58be5ba9c2776ec8141d02f8e37da
oai_identifier_str oai:seer.ufrgs.br:article/98128
network_acronym_str UFRGS-8
network_name_str Em Questão (Online)
repository_id_str
spelling Compositionality and overlapping in biomedical terminology: alternatives for health interoperabilityComposicionalidade e sobreposição em terminologias biomédicas: alternativas para interoperabilidade em saúdeOntologiaRepresentação do conhecimentoTerminologias clínicasInteroperabilidade.OntologyKnowledge representationMedical terminologiesInteroperability.A paramount information source within clinical practice is the patient record , an information-filled document that already exists in electronic format. The inherint inherent ambiguity of theThe ambiguity inherent in medical discourse has hampered the much sought-after automatic integration between electronic health records since, at this stage, automated systems are unable to address the syntactic and semantic complexity of the human language. Even standard terminologies designed to address such complexity are unable to solve the issues involved because of the multiplicity of alternatives, in addition to the fact that they are created for different purposes and goals. All this has resulted in redundancy, rework, and overlapping between terms. This paper assumes that the issue of interoperability is complex and needs to be tackled on several fronts. One of these fronts, in the context of electronic healthcare records, involves two conceptual conditions: epistemological overlapping and term compositionality. After explaining those conditions, we make use of an ontology-based model created on previous research to design and to test a method that aims to compensate for the shortcomings of such conditions. The test was performed on a fragment of the International Classification of Diseases. We found that the aforementioned conceptual conditions are relevant aspects to be faced in seeking interoperability.Uma importante fonte de informação para a prática clínica é o prontuário de paciente, um documento que já existe no formato eletrônico. A ambiguidade inerente ao discurso médico tem dificultado a integração automática desejável entre prontuários eletrônicos de pacientes uma vez que, no atual estágio de desenvolvimento tecnológico, os sistemas automáticos não estão aptos a lidar com variações sintáticas e semânticas da linguagem humana. Mesmo as terminologias padronizadas, criadas para lidar com tais variações, não resolvem o problema à medida da multiplicidade de opções. Essas, além dos objetivos e propósitos diversos, têm resultado em redundância, retrabalho e sobreposição entre termos. O presente artigo parte da premissa de que o problema da interoperabilidade é complexo e precisa ser atacado em diversas frentes. Uma dessas frentes, no âmbito dos prontuários eletrônicos de pacientes, envolve situações de caráter conceitual, a saber, a sobreposição epistemológica e a composicionalidade de termos. Vale-se aqui de um modelo baseado em ontologias criado em pesquisa anterior para projetar e testar um método que objetiva atenuar os efeitos dessas situações. O teste é realizado em fragmento da Classificação Internacional de Doenças e conclui-se que as situações de natureza conceitual mencionadas são aspectos relevantes a combater na busca por interoperabilidade.Universidade Federal do Rio Grande do Sul, Faculdade de Biblioteconomia e Comunicação, Programa de Pós-Graduação em Ciência da Informação (Porto Alegre/RS)2020-09-16info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionAvaliado por Paresapplication/pdfhttps://seer.ufrgs.br/index.php/EmQuestao/article/view/9812810.19132/1808-5245263.196-223Em Questão; v. 26, n. 3, set./dez. 2020; 196-223Em Questão; v. 26, n. 3, set./dez. 2020; 196-223Em Questão; v. 26, n. 3, set./dez. 2020; 196-2231808-52451807-8893reponame:Em Questão (Online)instname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSporhttps://seer.ufrgs.br/index.php/EmQuestao/article/view/98128/56927Copyright (c) 2020 Livia Marangon Duffles Teixeira, Mauricio Barcellos Almeidahttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessTeixeira, Livia Marangon DufflesAlmeida, Mauricio Barcellos2024-03-19T13:23:46Zoai:seer.ufrgs.br:article/98128Revistahttps://seer.ufrgs.br/emquestao/PUBhttps://seer.ufrgs.br/EmQuestao/oaiemquestao@ufrgs.br||emquestao@ufrgs.br1808-52451807-8893opendoar:2024-03-19T13:23:46Em Questão (Online) - Universidade Federal do Rio Grande do Sul (UFRGS)false
dc.title.none.fl_str_mv Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
Composicionalidade e sobreposição em terminologias biomédicas: alternativas para interoperabilidade em saúde
title Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
spellingShingle Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
Teixeira, Livia Marangon Duffles
Ontologia
Representação do conhecimento
Terminologias clínicas
Interoperabilidade.
Ontology
Knowledge representation
Medical terminologies
Interoperability.
title_short Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
title_full Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
title_fullStr Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
title_full_unstemmed Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
title_sort Compositionality and overlapping in biomedical terminology: alternatives for health interoperability
author Teixeira, Livia Marangon Duffles
author_facet Teixeira, Livia Marangon Duffles
Almeida, Mauricio Barcellos
author_role author
author2 Almeida, Mauricio Barcellos
author2_role author
dc.contributor.author.fl_str_mv Teixeira, Livia Marangon Duffles
Almeida, Mauricio Barcellos
dc.subject.por.fl_str_mv Ontologia
Representação do conhecimento
Terminologias clínicas
Interoperabilidade.
Ontology
Knowledge representation
Medical terminologies
Interoperability.
topic Ontologia
Representação do conhecimento
Terminologias clínicas
Interoperabilidade.
Ontology
Knowledge representation
Medical terminologies
Interoperability.
description A paramount information source within clinical practice is the patient record , an information-filled document that already exists in electronic format. The inherint inherent ambiguity of theThe ambiguity inherent in medical discourse has hampered the much sought-after automatic integration between electronic health records since, at this stage, automated systems are unable to address the syntactic and semantic complexity of the human language. Even standard terminologies designed to address such complexity are unable to solve the issues involved because of the multiplicity of alternatives, in addition to the fact that they are created for different purposes and goals. All this has resulted in redundancy, rework, and overlapping between terms. This paper assumes that the issue of interoperability is complex and needs to be tackled on several fronts. One of these fronts, in the context of electronic healthcare records, involves two conceptual conditions: epistemological overlapping and term compositionality. After explaining those conditions, we make use of an ontology-based model created on previous research to design and to test a method that aims to compensate for the shortcomings of such conditions. The test was performed on a fragment of the International Classification of Diseases. We found that the aforementioned conceptual conditions are relevant aspects to be faced in seeking interoperability.
publishDate 2020
dc.date.none.fl_str_mv 2020-09-16
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Avaliado por Pares
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.ufrgs.br/index.php/EmQuestao/article/view/98128
10.19132/1808-5245263.196-223
url https://seer.ufrgs.br/index.php/EmQuestao/article/view/98128
identifier_str_mv 10.19132/1808-5245263.196-223
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://seer.ufrgs.br/index.php/EmQuestao/article/view/98128/56927
dc.rights.driver.fl_str_mv Copyright (c) 2020 Livia Marangon Duffles Teixeira, Mauricio Barcellos Almeida
https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2020 Livia Marangon Duffles Teixeira, Mauricio Barcellos Almeida
https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal do Rio Grande do Sul, Faculdade de Biblioteconomia e Comunicação, Programa de Pós-Graduação em Ciência da Informação (Porto Alegre/RS)
publisher.none.fl_str_mv Universidade Federal do Rio Grande do Sul, Faculdade de Biblioteconomia e Comunicação, Programa de Pós-Graduação em Ciência da Informação (Porto Alegre/RS)
dc.source.none.fl_str_mv Em Questão; v. 26, n. 3, set./dez. 2020; 196-223
Em Questão; v. 26, n. 3, set./dez. 2020; 196-223
Em Questão; v. 26, n. 3, set./dez. 2020; 196-223
1808-5245
1807-8893
reponame:Em Questão (Online)
instname:Universidade Federal do Rio Grande do Sul (UFRGS)
instacron:UFRGS
instname_str Universidade Federal do Rio Grande do Sul (UFRGS)
instacron_str UFRGS
institution UFRGS
reponame_str Em Questão (Online)
collection Em Questão (Online)
repository.name.fl_str_mv Em Questão (Online) - Universidade Federal do Rio Grande do Sul (UFRGS)
repository.mail.fl_str_mv emquestao@ufrgs.br||emquestao@ufrgs.br
_version_ 1799766161596874752