Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers

Detalhes bibliográficos
Autor(a) principal: Correa, Romualdo da Silva
Data de Publicação: 2020
Outros Autores: Marques, Diego, Costa, Layse Raynara Ferreira, Costa, Lorenna Larissa Ferreira, Oliveira, Ana Beatriz Bezerra, Ramos, Carlos Cesar de Oliveira, Sandoval, Tatiana Vinasco, Lopes, Katia de Paiva, Vialle, Ricardo Assunção, Vidal, Amanda Ferreira, Silbiger, Vivian Nogueira, Santos, Ândrea Ribeiro dos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFRN
Texto Completo: https://repositorio.ufrn.br/handle/123456789/53101
https://doi.org/10.3390/cancers12113311
Resumo: The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.
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spelling Correa, Romualdo da SilvaMarques, DiegoCosta, Layse Raynara FerreiraCosta, Lorenna Larissa FerreiraOliveira, Ana Beatriz BezerraRamos, Carlos Cesar de OliveiraSandoval, Tatiana VinascoLopes, Katia de PaivaVialle, Ricardo AssunçãoVidal, Amanda FerreiraSilbiger, Vivian NogueiraSantos, Ândrea Ribeiro dos2023-07-06T17:46:33Z2023-07-06T17:46:33Z2020-11-10CORREA, Romualdo da Silva; MARQUES, Diego; FERREIRA-COSTA, Layse Raynara; FERREIRA-COSTA, Lorenna Larissa; BEZERRA-OLIVEIRA, Ana Beatriz; RAMOS, Carlos Cesar de Oliveira; VINASCO-SANDOVAL, Tatiana; LOPES, Katia de Paiva; VIALLE, Ricardo Assunção; VIDAL, Amanda Ferreira. Role of miRNAs in Sigmoid Colon Cancer: a search for potential biomarkers. Cancers, [S.L.], v. 12, n. 11, p. 3311, 10 nov. 2020. MDPI AG. http://dx.doi.org/10.3390/cancers12113311. Disponível em: https://www.mdpi.com/2072-6694/12/11/3311. Acesso em: 05 jul. 2023.https://repositorio.ufrn.br/handle/123456789/53101https://doi.org/10.3390/cancers12113311MDPIAttribution 3.0 Brazilhttp://creativecommons.org/licenses/by/3.0/br/info:eu-repo/semantics/openAccessbiomarkersfield-effectcolorectal cancermiRNomeRole of miRNAs in sigmoid colon cancer: a search for potential biomarkersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleThe aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.engreponame:Repositório Institucional da UFRNinstname:Universidade Federal do Rio Grande do Norte (UFRN)instacron:UFRNCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8914https://repositorio.ufrn.br/bitstream/123456789/53101/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD52ORIGINALRolemiRNAsSigmoid_Correa_Etal_2020.pdfRolemiRNAsSigmoid_Correa_Etal_2020.pdfapplication/pdf6782737https://repositorio.ufrn.br/bitstream/123456789/53101/1/RolemiRNAsSigmoid_Correa_Etal_2020.pdf262a428239dbe607b4fe814bb8dc965cMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81484https://repositorio.ufrn.br/bitstream/123456789/53101/3/license.txte9597aa2854d128fd968be5edc8a28d9MD53123456789/531012023-07-06 14:46:51.969oai:https://repositorio.ufrn.br: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Repositório de PublicaçõesPUBhttp://repositorio.ufrn.br/oai/opendoar:2023-07-06T17:46:51Repositório Institucional da UFRN - Universidade Federal do Rio Grande do Norte (UFRN)false
dc.title.pt_BR.fl_str_mv Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
title Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
spellingShingle Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
Correa, Romualdo da Silva
biomarkers
field-effect
colorectal cancer
miRNome
title_short Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
title_full Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
title_fullStr Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
title_full_unstemmed Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
title_sort Role of miRNAs in sigmoid colon cancer: a search for potential biomarkers
author Correa, Romualdo da Silva
author_facet Correa, Romualdo da Silva
Marques, Diego
Costa, Layse Raynara Ferreira
Costa, Lorenna Larissa Ferreira
Oliveira, Ana Beatriz Bezerra
Ramos, Carlos Cesar de Oliveira
Sandoval, Tatiana Vinasco
Lopes, Katia de Paiva
Vialle, Ricardo Assunção
Vidal, Amanda Ferreira
Silbiger, Vivian Nogueira
Santos, Ândrea Ribeiro dos
author_role author
author2 Marques, Diego
Costa, Layse Raynara Ferreira
Costa, Lorenna Larissa Ferreira
Oliveira, Ana Beatriz Bezerra
Ramos, Carlos Cesar de Oliveira
Sandoval, Tatiana Vinasco
Lopes, Katia de Paiva
Vialle, Ricardo Assunção
Vidal, Amanda Ferreira
Silbiger, Vivian Nogueira
Santos, Ândrea Ribeiro dos
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Correa, Romualdo da Silva
Marques, Diego
Costa, Layse Raynara Ferreira
Costa, Lorenna Larissa Ferreira
Oliveira, Ana Beatriz Bezerra
Ramos, Carlos Cesar de Oliveira
Sandoval, Tatiana Vinasco
Lopes, Katia de Paiva
Vialle, Ricardo Assunção
Vidal, Amanda Ferreira
Silbiger, Vivian Nogueira
Santos, Ândrea Ribeiro dos
dc.subject.por.fl_str_mv biomarkers
field-effect
colorectal cancer
miRNome
topic biomarkers
field-effect
colorectal cancer
miRNome
description The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.
publishDate 2020
dc.date.issued.fl_str_mv 2020-11-10
dc.date.accessioned.fl_str_mv 2023-07-06T17:46:33Z
dc.date.available.fl_str_mv 2023-07-06T17:46:33Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.fl_str_mv CORREA, Romualdo da Silva; MARQUES, Diego; FERREIRA-COSTA, Layse Raynara; FERREIRA-COSTA, Lorenna Larissa; BEZERRA-OLIVEIRA, Ana Beatriz; RAMOS, Carlos Cesar de Oliveira; VINASCO-SANDOVAL, Tatiana; LOPES, Katia de Paiva; VIALLE, Ricardo Assunção; VIDAL, Amanda Ferreira. Role of miRNAs in Sigmoid Colon Cancer: a search for potential biomarkers. Cancers, [S.L.], v. 12, n. 11, p. 3311, 10 nov. 2020. MDPI AG. http://dx.doi.org/10.3390/cancers12113311. Disponível em: https://www.mdpi.com/2072-6694/12/11/3311. Acesso em: 05 jul. 2023.
dc.identifier.uri.fl_str_mv https://repositorio.ufrn.br/handle/123456789/53101
dc.identifier.doi.none.fl_str_mv https://doi.org/10.3390/cancers12113311
identifier_str_mv CORREA, Romualdo da Silva; MARQUES, Diego; FERREIRA-COSTA, Layse Raynara; FERREIRA-COSTA, Lorenna Larissa; BEZERRA-OLIVEIRA, Ana Beatriz; RAMOS, Carlos Cesar de Oliveira; VINASCO-SANDOVAL, Tatiana; LOPES, Katia de Paiva; VIALLE, Ricardo Assunção; VIDAL, Amanda Ferreira. Role of miRNAs in Sigmoid Colon Cancer: a search for potential biomarkers. Cancers, [S.L.], v. 12, n. 11, p. 3311, 10 nov. 2020. MDPI AG. http://dx.doi.org/10.3390/cancers12113311. Disponível em: https://www.mdpi.com/2072-6694/12/11/3311. Acesso em: 05 jul. 2023.
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