Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos
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Data de Publicação: | 2019 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | Biblioteca Digital de Teses e Dissertações da UFRRJ |
Texto Completo: | https://tede.ufrrj.br/jspui/handle/jspui/5108 |
Resumo: | Multicomponent reactions (MCR) have received great attention in organic synthesis and medicinal chemistry, since they allow the design of new molecules and pharmaceuticals, in special, with great structural complexity and excellent yields. In the Biginelli reaction, the reactants are an aldehyde, a ?-ketoester and urea or thiourea leading to a myriad of dihydropyrimidinones/thiones. From the possible combinations of the reactants, three reaction pathways can be expected: the Knoevenagel pathway, the iminium ion pathway and the enamine pathway, being the second pointed out, from both experimental and theoretical works with common aromatic and aliphatic ?-ketoesters, as the most probable initiation route. However, if a coumarin ?-ketoester derivative is used, the Knovenagel pathway seems to prevail. In order to understand the differences between these reaction pathways, this work has been proposed aiming to the calculations of the possible reaction paths in the coumarin ?-ketoester + benzaldehyde + urea MCR and to the understanding of the contribution of the coumarin nucleus in the ?-ketoester moiety for the changes in the reaction mechanism. Geometry optimizations have been then performed at the Density Functional Theory (DFT) level, adopting the M06-2X, B3LYP and BHandHLYP fuctionals and the 6-31+G(d,p) basis set. From our calculations, the stationary points with lower relative energies belong to the Knoevenagel reaction path. All reaction pathways are initiated with the formation of an ion-dipole pre-barrier complex, stabilized by 8.76 ? 14.84 kcal mol-1 (relative to the isolated protonated reactants). The calculated barrier height for the reaction between the coumarin ?-ketoester and benzaldehyde (which initiates the Knoevenagel channel) is -18.10 kcal mol-1 (relative to the isolated protonated reactants). For the enamine and iminium ion pathways, barrier heights are 6.21 kcal mol-1 and -16.27 kcal mol-1, respectively (the enamine pathway is initiated from the coumarin ?-ketoester and urea reaction and the iminium ion is initiated form the urea and benzaldehyde reaction). Therefore, the barrier height of the first step in the Knoevenagel pathway is ca. 24 and 2 kcal mol-1 lower than the barrier heights of the first step in the enamine and iminium ion pathways, respectively. The reaction product in the Knoevenagel pathway is also the most stabilized (20.44 kcal mol-1 below the isolated protonated reactants, while the products in the enamine and iminium ion pathways are located, with respect the isolated reactants, at 5.85 and -25.04 kcal mol-1, respectively). The second step in all pathways is the dehydration, and barrier heights are 31.12 and 36.13, 28.85 and 31.99 and 32.60 and 36.25 kcal mol-1 (Knoevenagel, enamine and iminium ion, respectively). The final steps concern the addition of the third reactant, and the intermediates and transition states belonging to the Knoevenagel pathway remain the lowest energy structures. Thus, the Knoevenagel pathway is finally attributed as the lowest energy pathway in this complex mechanism for the coumarin ?-ketoester + benzaldehyde + urea MCR. These results satisfactorily compare to the experimental observations and demonstrate that the coumarin nucleus in the ?-ketoester moiety promotes the change of the mechanism initiation from the iminium ion to the Knoevenagel pathway. |
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Bauerfeldt, Glauco Favilla069.023.487-23K?mmerle, Arthur Eugen053.978.487-78Sant'Anna, Carlos Maur?c?o Rabetlo deCarneiro, Jos? Walk?mar de Mesquita419.463.258-30http://lattes.cnpq.br/7476565069981977Tejero, Tatiane Nicola2021-10-04T02:08:23Z2019-05-14TEJERO, Tatiane Nicola. Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos. 2019. 184 f. Disserta??o (Mestrado em Qu?mica) - Instituto de Qu?mica, Departamento de Qu?mica Fundamental, Universidade Federal Rural do Rio de Janeiro, Serop?dica, 2019.https://tede.ufrrj.br/jspui/handle/jspui/5108Multicomponent reactions (MCR) have received great attention in organic synthesis and medicinal chemistry, since they allow the design of new molecules and pharmaceuticals, in special, with great structural complexity and excellent yields. In the Biginelli reaction, the reactants are an aldehyde, a ?-ketoester and urea or thiourea leading to a myriad of dihydropyrimidinones/thiones. From the possible combinations of the reactants, three reaction pathways can be expected: the Knoevenagel pathway, the iminium ion pathway and the enamine pathway, being the second pointed out, from both experimental and theoretical works with common aromatic and aliphatic ?-ketoesters, as the most probable initiation route. However, if a coumarin ?-ketoester derivative is used, the Knovenagel pathway seems to prevail. In order to understand the differences between these reaction pathways, this work has been proposed aiming to the calculations of the possible reaction paths in the coumarin ?-ketoester + benzaldehyde + urea MCR and to the understanding of the contribution of the coumarin nucleus in the ?-ketoester moiety for the changes in the reaction mechanism. Geometry optimizations have been then performed at the Density Functional Theory (DFT) level, adopting the M06-2X, B3LYP and BHandHLYP fuctionals and the 6-31+G(d,p) basis set. From our calculations, the stationary points with lower relative energies belong to the Knoevenagel reaction path. All reaction pathways are initiated with the formation of an ion-dipole pre-barrier complex, stabilized by 8.76 ? 14.84 kcal mol-1 (relative to the isolated protonated reactants). The calculated barrier height for the reaction between the coumarin ?-ketoester and benzaldehyde (which initiates the Knoevenagel channel) is -18.10 kcal mol-1 (relative to the isolated protonated reactants). For the enamine and iminium ion pathways, barrier heights are 6.21 kcal mol-1 and -16.27 kcal mol-1, respectively (the enamine pathway is initiated from the coumarin ?-ketoester and urea reaction and the iminium ion is initiated form the urea and benzaldehyde reaction). Therefore, the barrier height of the first step in the Knoevenagel pathway is ca. 24 and 2 kcal mol-1 lower than the barrier heights of the first step in the enamine and iminium ion pathways, respectively. The reaction product in the Knoevenagel pathway is also the most stabilized (20.44 kcal mol-1 below the isolated protonated reactants, while the products in the enamine and iminium ion pathways are located, with respect the isolated reactants, at 5.85 and -25.04 kcal mol-1, respectively). The second step in all pathways is the dehydration, and barrier heights are 31.12 and 36.13, 28.85 and 31.99 and 32.60 and 36.25 kcal mol-1 (Knoevenagel, enamine and iminium ion, respectively). The final steps concern the addition of the third reactant, and the intermediates and transition states belonging to the Knoevenagel pathway remain the lowest energy structures. Thus, the Knoevenagel pathway is finally attributed as the lowest energy pathway in this complex mechanism for the coumarin ?-ketoester + benzaldehyde + urea MCR. These results satisfactorily compare to the experimental observations and demonstrate that the coumarin nucleus in the ?-ketoester moiety promotes the change of the mechanism initiation from the iminium ion to the Knoevenagel pathway.As rea??es multicomponentes receberam grande aten??o na s?ntese org?nica e qu?mica medicinal, pois permitem o design de novas mol?culas e produtos farmac?uticos, em especial, com grande complexidade estrutural e excelentes rendimentos. Na rea??o de Biginelli, os reagentes s?o alde?do, ?-ceto?ster e ureia ou tioureia levando a dihidropirimidinonas/tionas. A partir das poss?veis combina??es dos reagentes, podem ser esperadas tr?s vias de rea??o: a via de Knoevenagel, a via do ?on im?nio e a via de enamina, sendo a segunda apontada, tanto por trabalhos experimentais como te?ricos (com ?-ceto?steres arom?ticos e alif?ticos comuns) como a via de inicia??o mais prov?vel. No entanto, se um ?-ceto?ster derivado de cumarina ? usado, a via de Knovenagel passa a prevalecer. Para entender as diferen?as entre essas vias de rea??o, este trabalho foi proposto visando os c?lculos dos poss?veis caminhos de rea??o usando ?-ceto?ster derivado de cumarina + benzalde?do + ureia e ? compreens?o da contribui??o do n?cleo de cumarina presente no ?-ceto?ster para as mudan?as no mecanismo de rea??o. Os c?lculos foram realizados em n?vel M06-2X/6-31+G(d,p), B3LYP/6-31+G(d,p) e BHandHLYP/6-31+G(d,p), afim de comparar os dados obtidos neste trabalho com dados descritos na literatura. Para descrever o efeito do solvente foi adotado c?lculos CPCM e IEFPCM. O caminho que passa pelos pontos estacion?rios de energias relativas mais baixas ? o de Knoevenagel. A barreira calculada para a rea??o entre o ?-ceto?ster + benzalde?do (que inicia o canal de Knoevenagel) variam entre 8,76 ? 14,84 kcal mol-1 (em rela??o aos reagentes protonados isolados, essa varia??o refere-se ao n?vel de c?lculo utilizado). Para a via enamina, a barreira varia entre 27,11 e 33,03 kcal mol-1, (dependendo do n?vel de calculado utilizado, a via de enamina ? iniciada a partir da rea??o de ?-ceto?ster + ureia) e para a via do ?on im?nio a barreira varia entre (dependendo do n?vel de c?lculo observado, e esta via ? iniciada pela rea??o de ureia + benzalde?do). O produto de rea??o na via de Knoevenagel ? tamb?m o mais estabilizado (ficando entre -14,74 e -20,44 kcal mol-1, enquanto os produtos nas vias de enamina e do ?on im?nio 8,76 - ? 12,16 e -6,74 e -9,13 kcal mol-1, respectivamente). O segundo passo em todas as vias ? a desidrata??o, e as alturas de barreira variam entre 31,12 ? 36,13, 32,60 - 36,25 e 28,85 - 31,99 (Knoevenagel, ?on im?nio e enamina, respectivamente). As etapas finais dizem respeito ? adi??o do terceiro reagente, e os intermedi?rios e estados de transi??o pertencentes ? via de Knoevenagel continuam sendo os pontos estacion?rios de energias mais baixas. Assim, a via de Knoevenagel ? finalmente atribu?da como a via de rea??o mais prov?vel neste mecanismo complexo. Estes resultados se comparam satisfatoriamente com as observa??es emp?ricas e demonstram que o n?cleo de cumarina presente no ?-ceto?ster promove a mudan?a do mecanismo de inicia??o do ?on im?nio para a via de Knoevenagel.Submitted by Jorge Silva (jorgelmsilva@ufrrj.br) on 2021-10-04T02:08:23Z No. of bitstreams: 1 2019 - Tatiane Nicola Tejero.pdf: 7737286 bytes, checksum: 996ab1bc23d602165ea59ec16f311972 (MD5)Made available in DSpace on 2021-10-04T02:08:23Z (GMT). No. of bitstreams: 1 2019 - Tatiane Nicola Tejero.pdf: 7737286 bytes, checksum: 996ab1bc23d602165ea59ec16f311972 (MD5) Previous issue date: 2019-05-14CAPES - Coordena??o de Aperfei?oamento de Pessoal de N?vel Superiorapplication/pdfhttps://tede.ufrrj.br/retrieve/67012/2019%20-%20Tatiane%20Nicola%20Tejero.pdf.jpgporUniversidade Federal Rural do Rio de JaneiroPrograma de P?s-Gradua??o em Qu?micaUFRRJBrasilInstituto de Qu?micaAL-MASOUDI, N. A.; AL-SALIHI, N. J.; MARICH, Y. A.; MARKUS, T. Synthesis and Fluorescence Properties of new Monastrol Analogs Conjugated Fluorescent Coumarin Scaffolds. Journal of Fluorescence, v. 26, p. 31?35, 2016. ALVIM, H. G. O.; DA SILVA J?NIOR, E. N.; NETO, B. A. D. What do we know about multicomponent reactions? Mechanisms and trends for the Biginelli, Hantzsch, Mannich, Passerini and Ugi MCRs. Royal Society of Chemistry Advances, v. 4, n. 97, p. 54282?54299, 2014. ALVIM, H. G. O.; DE LIMA, T. B.; DE OLIVEIRA, H. C. B.; GOZZO, F. C.; MACEDO, J. L. 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dc.title.por.fl_str_mv |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
dc.title.alternative.eng.fl_str_mv |
Investigation of the Biginelli reaction mechanism |
title |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
spellingShingle |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos Tejero, Tatiane Nicola Rea??o Multicomponente Rea??o Biginelli intermedi?rio Knoevenagel Multicomponent Reaction Biginelli Reaction Knoevenagel intermediate Qu?mica |
title_short |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
title_full |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
title_fullStr |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
title_full_unstemmed |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
title_sort |
Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos |
author |
Tejero, Tatiane Nicola |
author_facet |
Tejero, Tatiane Nicola |
author_role |
author |
dc.contributor.advisor1.fl_str_mv |
Bauerfeldt, Glauco Favilla |
dc.contributor.advisor1ID.fl_str_mv |
069.023.487-23 |
dc.contributor.advisor-co1.fl_str_mv |
K?mmerle, Arthur Eugen |
dc.contributor.advisor-co1ID.fl_str_mv |
053.978.487-78 |
dc.contributor.referee1.fl_str_mv |
Sant'Anna, Carlos Maur?c?o Rabetlo de |
dc.contributor.referee2.fl_str_mv |
Carneiro, Jos? Walk?mar de Mesquita |
dc.contributor.authorID.fl_str_mv |
419.463.258-30 |
dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/7476565069981977 |
dc.contributor.author.fl_str_mv |
Tejero, Tatiane Nicola |
contributor_str_mv |
Bauerfeldt, Glauco Favilla K?mmerle, Arthur Eugen Sant'Anna, Carlos Maur?c?o Rabetlo de Carneiro, Jos? Walk?mar de Mesquita |
dc.subject.por.fl_str_mv |
Rea??o Multicomponente Rea??o Biginelli intermedi?rio Knoevenagel |
topic |
Rea??o Multicomponente Rea??o Biginelli intermedi?rio Knoevenagel Multicomponent Reaction Biginelli Reaction Knoevenagel intermediate Qu?mica |
dc.subject.eng.fl_str_mv |
Multicomponent Reaction Biginelli Reaction Knoevenagel intermediate |
dc.subject.cnpq.fl_str_mv |
Qu?mica |
description |
Multicomponent reactions (MCR) have received great attention in organic synthesis and medicinal chemistry, since they allow the design of new molecules and pharmaceuticals, in special, with great structural complexity and excellent yields. In the Biginelli reaction, the reactants are an aldehyde, a ?-ketoester and urea or thiourea leading to a myriad of dihydropyrimidinones/thiones. From the possible combinations of the reactants, three reaction pathways can be expected: the Knoevenagel pathway, the iminium ion pathway and the enamine pathway, being the second pointed out, from both experimental and theoretical works with common aromatic and aliphatic ?-ketoesters, as the most probable initiation route. However, if a coumarin ?-ketoester derivative is used, the Knovenagel pathway seems to prevail. In order to understand the differences between these reaction pathways, this work has been proposed aiming to the calculations of the possible reaction paths in the coumarin ?-ketoester + benzaldehyde + urea MCR and to the understanding of the contribution of the coumarin nucleus in the ?-ketoester moiety for the changes in the reaction mechanism. Geometry optimizations have been then performed at the Density Functional Theory (DFT) level, adopting the M06-2X, B3LYP and BHandHLYP fuctionals and the 6-31+G(d,p) basis set. From our calculations, the stationary points with lower relative energies belong to the Knoevenagel reaction path. All reaction pathways are initiated with the formation of an ion-dipole pre-barrier complex, stabilized by 8.76 ? 14.84 kcal mol-1 (relative to the isolated protonated reactants). The calculated barrier height for the reaction between the coumarin ?-ketoester and benzaldehyde (which initiates the Knoevenagel channel) is -18.10 kcal mol-1 (relative to the isolated protonated reactants). For the enamine and iminium ion pathways, barrier heights are 6.21 kcal mol-1 and -16.27 kcal mol-1, respectively (the enamine pathway is initiated from the coumarin ?-ketoester and urea reaction and the iminium ion is initiated form the urea and benzaldehyde reaction). Therefore, the barrier height of the first step in the Knoevenagel pathway is ca. 24 and 2 kcal mol-1 lower than the barrier heights of the first step in the enamine and iminium ion pathways, respectively. The reaction product in the Knoevenagel pathway is also the most stabilized (20.44 kcal mol-1 below the isolated protonated reactants, while the products in the enamine and iminium ion pathways are located, with respect the isolated reactants, at 5.85 and -25.04 kcal mol-1, respectively). The second step in all pathways is the dehydration, and barrier heights are 31.12 and 36.13, 28.85 and 31.99 and 32.60 and 36.25 kcal mol-1 (Knoevenagel, enamine and iminium ion, respectively). The final steps concern the addition of the third reactant, and the intermediates and transition states belonging to the Knoevenagel pathway remain the lowest energy structures. Thus, the Knoevenagel pathway is finally attributed as the lowest energy pathway in this complex mechanism for the coumarin ?-ketoester + benzaldehyde + urea MCR. These results satisfactorily compare to the experimental observations and demonstrate that the coumarin nucleus in the ?-ketoester moiety promotes the change of the mechanism initiation from the iminium ion to the Knoevenagel pathway. |
publishDate |
2019 |
dc.date.issued.fl_str_mv |
2019-05-14 |
dc.date.accessioned.fl_str_mv |
2021-10-04T02:08:23Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
TEJERO, Tatiane Nicola. Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos. 2019. 184 f. Disserta??o (Mestrado em Qu?mica) - Instituto de Qu?mica, Departamento de Qu?mica Fundamental, Universidade Federal Rural do Rio de Janeiro, Serop?dica, 2019. |
dc.identifier.uri.fl_str_mv |
https://tede.ufrrj.br/jspui/handle/jspui/5108 |
identifier_str_mv |
TEJERO, Tatiane Nicola. Investiga??o do mecanismo de rea??o de Biginelli de derivados cumar?nicos. 2019. 184 f. Disserta??o (Mestrado em Qu?mica) - Instituto de Qu?mica, Departamento de Qu?mica Fundamental, Universidade Federal Rural do Rio de Janeiro, Serop?dica, 2019. |
url |
https://tede.ufrrj.br/jspui/handle/jspui/5108 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.references.por.fl_str_mv |
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