Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers
Autor(a) principal: | |
---|---|
Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFS |
Texto Completo: | http://ri.ufs.br/jspui/handle/riufs/7286 |
Resumo: | Varronia curassavica Jacq. is a medicinal and aromatic plant from Brazil with significant economic importance. Studies on genetic diversity in active germplasm banks (AGB) are essential for conservation and breeding programs. The aim of this study was to analyze the genetic diversity of V. curassavica accessions of the AGB of Medicinal and Aromatic Plants of the Federal University of Sergipe (UFS), using inter-simple sequence repeat molecular markers. Twentyfour primers were tested, and 14 were polymorphic and informative, resulting in 149 bands with 97.98% polymorphism. The UPGMA dendrogram divided the accessions into Clusters I and II. Jaccard similarity coefficients for pair-wise comparisons of accessions ranged between 0.24 and 0.78. The pairs of accessions VCUR-001/VCUR-503, VCUR-001/VCUR-504, and VCUR-104/VCUR-501 showed relatively low similarity (0.24), and the pair of accessions VCUR-402/VCUR403 showed medium similarity (0.78). Twenty-eight accessions were divided into three distinct clusters, according to the STRUCTURE analysis. The genetic diversity of V. curassavica in the AGB of UFS is low to medium, and it requires expansion. Accession VCUR-802 is the most suitable for selection in breeding program of this species, since it clearly represents all of the diversity present in the AGB. |
id |
UFS-2_bd7157c44a0421a40e509a920afbc440 |
---|---|
oai_identifier_str |
oai:ufs.br:riufs/7286 |
network_acronym_str |
UFS-2 |
network_name_str |
Repositório Institucional da UFS |
repository_id_str |
|
spelling |
Brito, Fabiany de AndradeNizio, Daniela Aparecida de CastroMuniz, Ana Veruska Cruz da SilvaDiniz, Leandro Eugenio CardamoneRabbani, Allívia Rouse CarregosaArrigoni-Blank, Maria de FátimaCarvalho, Sheila Valéria ÁlvaresFigueira, Glyn MaraMontanari Junior, IlioBlank, Arie Fitzgerald2018-02-01T12:19:30Z2018-02-01T12:19:30Z2016BRITO, F. de A. et al. Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 15, n. 3, 2016. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-analysis-of-varronia-curassavica-jacq-accessions-using-issr-markers-1684.html>. Acesso em: 01 fev. 2018.1676-5680http://ri.ufs.br/jspui/handle/riufs/7286Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0)engFundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP)Genetics and Molecular ResearchVarronia curassavicaConservationDiversityISSRConservaçãoDiversidadeGenetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleVarronia curassavica Jacq. is a medicinal and aromatic plant from Brazil with significant economic importance. Studies on genetic diversity in active germplasm banks (AGB) are essential for conservation and breeding programs. The aim of this study was to analyze the genetic diversity of V. curassavica accessions of the AGB of Medicinal and Aromatic Plants of the Federal University of Sergipe (UFS), using inter-simple sequence repeat molecular markers. Twentyfour primers were tested, and 14 were polymorphic and informative, resulting in 149 bands with 97.98% polymorphism. The UPGMA dendrogram divided the accessions into Clusters I and II. Jaccard similarity coefficients for pair-wise comparisons of accessions ranged between 0.24 and 0.78. The pairs of accessions VCUR-001/VCUR-503, VCUR-001/VCUR-504, and VCUR-104/VCUR-501 showed relatively low similarity (0.24), and the pair of accessions VCUR-402/VCUR403 showed medium similarity (0.78). Twenty-eight accessions were divided into three distinct clusters, according to the STRUCTURE analysis. The genetic diversity of V. curassavica in the AGB of UFS is low to medium, and it requires expansion. Accession VCUR-802 is the most suitable for selection in breeding program of this species, since it clearly represents all of the diversity present in the AGB.reponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSinfo:eu-repo/semantics/openAccessLICENSElicense.txtlicense.txttext/plain; charset=utf-81475https://ri.ufs.br/jspui/bitstream/riufs/7286/1/license.txt098cbbf65c2c15e1fb2e49c5d306a44cMD51ORIGINALVarroniaCurassavicaAccessionsISSRMarkers.pdfVarroniaCurassavicaAccessionsISSRMarkers.pdfapplication/pdf1034287https://ri.ufs.br/jspui/bitstream/riufs/7286/2/VarroniaCurassavicaAccessionsISSRMarkers.pdfbb04af68b47e1d42ef4a6c7a727acd76MD52TEXTVarroniaCurassavicaAccessionsISSRMarkers.pdf.txtVarroniaCurassavicaAccessionsISSRMarkers.pdf.txtExtracted texttext/plain29982https://ri.ufs.br/jspui/bitstream/riufs/7286/3/VarroniaCurassavicaAccessionsISSRMarkers.pdf.txtf414e2f9a6e30c26baf1edcdd0c4ad5aMD53THUMBNAILVarroniaCurassavicaAccessionsISSRMarkers.pdf.jpgVarroniaCurassavicaAccessionsISSRMarkers.pdf.jpgGenerated Thumbnailimage/jpeg1585https://ri.ufs.br/jspui/bitstream/riufs/7286/4/VarroniaCurassavicaAccessionsISSRMarkers.pdf.jpg29f6e16bf6b51634e185885b7dd9fea2MD54riufs/72862018-02-01 09:19:30.407oai:ufs.br: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Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2018-02-01T12:19:30Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false |
dc.title.pt_BR.fl_str_mv |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
title |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
spellingShingle |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers Brito, Fabiany de Andrade Varronia curassavica Conservation Diversity ISSR Conservação Diversidade |
title_short |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
title_full |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
title_fullStr |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
title_full_unstemmed |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
title_sort |
Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers |
author |
Brito, Fabiany de Andrade |
author_facet |
Brito, Fabiany de Andrade Nizio, Daniela Aparecida de Castro Muniz, Ana Veruska Cruz da Silva Diniz, Leandro Eugenio Cardamone Rabbani, Allívia Rouse Carregosa Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Figueira, Glyn Mara Montanari Junior, Ilio Blank, Arie Fitzgerald |
author_role |
author |
author2 |
Nizio, Daniela Aparecida de Castro Muniz, Ana Veruska Cruz da Silva Diniz, Leandro Eugenio Cardamone Rabbani, Allívia Rouse Carregosa Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Figueira, Glyn Mara Montanari Junior, Ilio Blank, Arie Fitzgerald |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Brito, Fabiany de Andrade Nizio, Daniela Aparecida de Castro Muniz, Ana Veruska Cruz da Silva Diniz, Leandro Eugenio Cardamone Rabbani, Allívia Rouse Carregosa Arrigoni-Blank, Maria de Fátima Carvalho, Sheila Valéria Álvares Figueira, Glyn Mara Montanari Junior, Ilio Blank, Arie Fitzgerald |
dc.subject.eng.fl_str_mv |
Varronia curassavica Conservation Diversity ISSR |
topic |
Varronia curassavica Conservation Diversity ISSR Conservação Diversidade |
dc.subject.por.fl_str_mv |
Conservação Diversidade |
description |
Varronia curassavica Jacq. is a medicinal and aromatic plant from Brazil with significant economic importance. Studies on genetic diversity in active germplasm banks (AGB) are essential for conservation and breeding programs. The aim of this study was to analyze the genetic diversity of V. curassavica accessions of the AGB of Medicinal and Aromatic Plants of the Federal University of Sergipe (UFS), using inter-simple sequence repeat molecular markers. Twentyfour primers were tested, and 14 were polymorphic and informative, resulting in 149 bands with 97.98% polymorphism. The UPGMA dendrogram divided the accessions into Clusters I and II. Jaccard similarity coefficients for pair-wise comparisons of accessions ranged between 0.24 and 0.78. The pairs of accessions VCUR-001/VCUR-503, VCUR-001/VCUR-504, and VCUR-104/VCUR-501 showed relatively low similarity (0.24), and the pair of accessions VCUR-402/VCUR403 showed medium similarity (0.78). Twenty-eight accessions were divided into three distinct clusters, according to the STRUCTURE analysis. The genetic diversity of V. curassavica in the AGB of UFS is low to medium, and it requires expansion. Accession VCUR-802 is the most suitable for selection in breeding program of this species, since it clearly represents all of the diversity present in the AGB. |
publishDate |
2016 |
dc.date.issued.fl_str_mv |
2016 |
dc.date.accessioned.fl_str_mv |
2018-02-01T12:19:30Z |
dc.date.available.fl_str_mv |
2018-02-01T12:19:30Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
BRITO, F. de A. et al. Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 15, n. 3, 2016. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-analysis-of-varronia-curassavica-jacq-accessions-using-issr-markers-1684.html>. Acesso em: 01 fev. 2018. |
dc.identifier.uri.fl_str_mv |
http://ri.ufs.br/jspui/handle/riufs/7286 |
dc.identifier.issn.none.fl_str_mv |
1676-5680 |
dc.identifier.license.pt_BR.fl_str_mv |
Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0) |
identifier_str_mv |
BRITO, F. de A. et al. Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers. Genetics and Molecular Research, Ribeirão Preto, v. 15, n. 3, 2016. Disponível em: <https://www.geneticsmr.com/abstract/genetic-diversity-analysis-of-varronia-curassavica-jacq-accessions-using-issr-markers-1684.html>. Acesso em: 01 fev. 2018. 1676-5680 Creative Commons Atribuição-Não Comercial-Compartilha Igual 4.0 Internacional (CC BY-NC-SA 4.0) |
url |
http://ri.ufs.br/jspui/handle/riufs/7286 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Genetics and Molecular Research |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Fundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP) |
publisher.none.fl_str_mv |
Fundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP) |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFS instname:Universidade Federal de Sergipe (UFS) instacron:UFS |
instname_str |
Universidade Federal de Sergipe (UFS) |
instacron_str |
UFS |
institution |
UFS |
reponame_str |
Repositório Institucional da UFS |
collection |
Repositório Institucional da UFS |
bitstream.url.fl_str_mv |
https://ri.ufs.br/jspui/bitstream/riufs/7286/1/license.txt https://ri.ufs.br/jspui/bitstream/riufs/7286/2/VarroniaCurassavicaAccessionsISSRMarkers.pdf https://ri.ufs.br/jspui/bitstream/riufs/7286/3/VarroniaCurassavicaAccessionsISSRMarkers.pdf.txt https://ri.ufs.br/jspui/bitstream/riufs/7286/4/VarroniaCurassavicaAccessionsISSRMarkers.pdf.jpg |
bitstream.checksum.fl_str_mv |
098cbbf65c2c15e1fb2e49c5d306a44c bb04af68b47e1d42ef4a6c7a727acd76 f414e2f9a6e30c26baf1edcdd0c4ad5a 29f6e16bf6b51634e185885b7dd9fea2 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS) |
repository.mail.fl_str_mv |
repositorio@academico.ufs.br |
_version_ |
1802110732125339648 |