Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Ciência Rural |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251 |
Resumo: | ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories. |
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Ciência rural (Online) |
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Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRScalibrationvalidationmathematical modelsspectral pretreatment.ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories.Universidade Federal de Santa Maria2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251Ciência Rural v.50 n.1 2020reponame:Ciência Ruralinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM10.1590/0103-8478cr20190506info:eu-repo/semantics/openAccessLazzaretti,Bruno PedroSilva,Leandro Souza daDrescher,Gerson LaersonDotto,André CarnielettoBritzke,DarinesNörnberg,José Laerteeng2020-01-31T00:00:00ZRevista |
dc.title.none.fl_str_mv |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
title |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
spellingShingle |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS Lazzaretti,Bruno Pedro calibration validation mathematical models spectral pretreatment. |
title_short |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
title_full |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
title_fullStr |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
title_full_unstemmed |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
title_sort |
Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS |
author |
Lazzaretti,Bruno Pedro |
author_facet |
Lazzaretti,Bruno Pedro Silva,Leandro Souza da Drescher,Gerson Laerson Dotto,André Carnieletto Britzke,Darines Nörnberg,José Laerte |
author_role |
author |
author2 |
Silva,Leandro Souza da Drescher,Gerson Laerson Dotto,André Carnieletto Britzke,Darines Nörnberg,José Laerte |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
Lazzaretti,Bruno Pedro Silva,Leandro Souza da Drescher,Gerson Laerson Dotto,André Carnieletto Britzke,Darines Nörnberg,José Laerte |
dc.subject.por.fl_str_mv |
calibration validation mathematical models spectral pretreatment. |
topic |
calibration validation mathematical models spectral pretreatment. |
description |
ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/0103-8478cr20190506 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Universidade Federal de Santa Maria |
publisher.none.fl_str_mv |
Universidade Federal de Santa Maria |
dc.source.none.fl_str_mv |
Ciência Rural v.50 n.1 2020 reponame:Ciência Rural instname:Universidade Federal de Santa Maria (UFSM) instacron:UFSM |
instname_str |
Universidade Federal de Santa Maria (UFSM) |
instacron_str |
UFSM |
institution |
UFSM |
reponame_str |
Ciência Rural |
collection |
Ciência Rural |
repository.name.fl_str_mv |
|
repository.mail.fl_str_mv |
|
_version_ |
1749140554348756992 |