Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS

Detalhes bibliográficos
Autor(a) principal: Lazzaretti,Bruno Pedro
Data de Publicação: 2020
Outros Autores: Silva,Leandro Souza da, Drescher,Gerson Laerson, Dotto,André Carnieletto, Britzke,Darines, Nörnberg,José Laerte
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Ciência Rural
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251
Resumo: ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories.
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spelling Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRScalibrationvalidationmathematical modelsspectral pretreatment.ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories.Universidade Federal de Santa Maria2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251Ciência Rural v.50 n.1 2020reponame:Ciência Ruralinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM10.1590/0103-8478cr20190506info:eu-repo/semantics/openAccessLazzaretti,Bruno PedroSilva,Leandro Souza daDrescher,Gerson LaersonDotto,André CarnielettoBritzke,DarinesNörnberg,José Laerteeng2020-01-31T00:00:00ZRevista
dc.title.none.fl_str_mv Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
title Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
spellingShingle Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
Lazzaretti,Bruno Pedro
calibration
validation
mathematical models
spectral pretreatment.
title_short Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
title_full Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
title_fullStr Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
title_full_unstemmed Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
title_sort Prediction of soil organic matter and clay contents by near-infrared spectroscopy - NIRS
author Lazzaretti,Bruno Pedro
author_facet Lazzaretti,Bruno Pedro
Silva,Leandro Souza da
Drescher,Gerson Laerson
Dotto,André Carnieletto
Britzke,Darines
Nörnberg,José Laerte
author_role author
author2 Silva,Leandro Souza da
Drescher,Gerson Laerson
Dotto,André Carnieletto
Britzke,Darines
Nörnberg,José Laerte
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Lazzaretti,Bruno Pedro
Silva,Leandro Souza da
Drescher,Gerson Laerson
Dotto,André Carnieletto
Britzke,Darines
Nörnberg,José Laerte
dc.subject.por.fl_str_mv calibration
validation
mathematical models
spectral pretreatment.
topic calibration
validation
mathematical models
spectral pretreatment.
description ABSTRACT: Among the soil constituents, special attention is given to soil organic matter (SOM) and clay contents, since, among other aspects, they are key factors to nutrient retention and soil aggregates formation, which directly affect the crop production potential. The methods commonly used for the quantification of these constituents have some disadvantages, such as the use of chemical reactants and waste generation. An alternative to these methods is the near-infrared spectroscopy (NIRS) technique. The aim of this research is to evaluate models for SOM and clay quantification in soil samples using spectral data by NIRS. A set (n = 400) of soil samples previously analyzed by traditional methods were used to generate a NIRS calibration curve. The clay content was determined by the hydrometer method while SOM content was determined by sulfochromic solution. For calibration, we used the original spectra (absorbance) and spectral pretreatment (Savitzky-Golay smoothing derivative) in the following models: multiple linear regression (MLR), partial last squares regression (PLSR), support vector machine (SVM) and Gaussian process regression (GPR). The curve validation was performed with the SVM model (best performance in the calibration based on R² and RMSE) in two ways: with 40 random samples from the calibration set and another set with 200 new unknown samples. The soil clay content affects the predictive ability of the calibration curve to estimate SOM content by NIRS. Validation curves showed poorer performance (lower R² and higher RMSE) when generated from unknown samples, where the model tends to overestimate the lower levels and to underestimate the higher levels of clay and SOM. Despite the potential of NIRS technique to predict these attributes, further calibration studies are still needed to use this technique in soil analysis laboratories.
publishDate 2020
dc.date.none.fl_str_mv 2020-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782020000100251
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/0103-8478cr20190506
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
publisher.none.fl_str_mv Universidade Federal de Santa Maria
dc.source.none.fl_str_mv Ciência Rural v.50 n.1 2020
reponame:Ciência Rural
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Ciência Rural
collection Ciência Rural
repository.name.fl_str_mv
repository.mail.fl_str_mv
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