Genetic variability in physic nuts cultivated in Northeastern Brazil

Detalhes bibliográficos
Autor(a) principal: Oliveira,Vanice Dias
Data de Publicação: 2013
Outros Autores: Rabbani,Allivia Rouse Carregosa, Silva,Ana Veruska Cruz da, Lédo,Ana da Silva
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Ciência Rural
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782013000600006
Resumo: This research had as objective to characterize genetically individuals of physic nut cultivated in experimental areas in Sergipe, Brazil by means of RAPD molecular markers. Leaves of 40 individuals were collected and DNA was isolated using CTAB 2% method. Were used 30 primers RAPD for DNA amplification, and this data was used to estimate the genetic similarity among the pairs of individuals, using Jaccard coefficient, and group them out for the UPGMA method. Also, the genetic structure and diversity of the populations were assessed using AMOVA. Of the 100 fragments generated, 29 of were polymorphic. A similarity average of 0.54 among the individuals was found and the amplitude similarities varied from 0.18 to 1.00. One of them (U5) was unit clusters and formed by the most divergent individuals. AMOVA indicated that there is more variation within (63%) the population. In conclusion, it was possible verify genetic variability in physic nut using RAPD markers at these experimental areas.
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spelling Genetic variability in physic nuts cultivated in Northeastern BrazilJatropha curcas L.RAPDgenetic diversityThis research had as objective to characterize genetically individuals of physic nut cultivated in experimental areas in Sergipe, Brazil by means of RAPD molecular markers. Leaves of 40 individuals were collected and DNA was isolated using CTAB 2% method. Were used 30 primers RAPD for DNA amplification, and this data was used to estimate the genetic similarity among the pairs of individuals, using Jaccard coefficient, and group them out for the UPGMA method. Also, the genetic structure and diversity of the populations were assessed using AMOVA. Of the 100 fragments generated, 29 of were polymorphic. A similarity average of 0.54 among the individuals was found and the amplitude similarities varied from 0.18 to 1.00. One of them (U5) was unit clusters and formed by the most divergent individuals. AMOVA indicated that there is more variation within (63%) the population. In conclusion, it was possible verify genetic variability in physic nut using RAPD markers at these experimental areas.Universidade Federal de Santa Maria2013-06-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782013000600006Ciência Rural v.43 n.6 2013reponame:Ciência Ruralinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM10.1590/S0103-84782013005000060info:eu-repo/semantics/openAccessOliveira,Vanice DiasRabbani,Allivia Rouse CarregosaSilva,Ana Veruska Cruz daLédo,Ana da Silvaeng2014-02-21T00:00:00ZRevista
dc.title.none.fl_str_mv Genetic variability in physic nuts cultivated in Northeastern Brazil
title Genetic variability in physic nuts cultivated in Northeastern Brazil
spellingShingle Genetic variability in physic nuts cultivated in Northeastern Brazil
Oliveira,Vanice Dias
Jatropha curcas L.
RAPD
genetic diversity
title_short Genetic variability in physic nuts cultivated in Northeastern Brazil
title_full Genetic variability in physic nuts cultivated in Northeastern Brazil
title_fullStr Genetic variability in physic nuts cultivated in Northeastern Brazil
title_full_unstemmed Genetic variability in physic nuts cultivated in Northeastern Brazil
title_sort Genetic variability in physic nuts cultivated in Northeastern Brazil
author Oliveira,Vanice Dias
author_facet Oliveira,Vanice Dias
Rabbani,Allivia Rouse Carregosa
Silva,Ana Veruska Cruz da
Lédo,Ana da Silva
author_role author
author2 Rabbani,Allivia Rouse Carregosa
Silva,Ana Veruska Cruz da
Lédo,Ana da Silva
author2_role author
author
author
dc.contributor.author.fl_str_mv Oliveira,Vanice Dias
Rabbani,Allivia Rouse Carregosa
Silva,Ana Veruska Cruz da
Lédo,Ana da Silva
dc.subject.por.fl_str_mv Jatropha curcas L.
RAPD
genetic diversity
topic Jatropha curcas L.
RAPD
genetic diversity
description This research had as objective to characterize genetically individuals of physic nut cultivated in experimental areas in Sergipe, Brazil by means of RAPD molecular markers. Leaves of 40 individuals were collected and DNA was isolated using CTAB 2% method. Were used 30 primers RAPD for DNA amplification, and this data was used to estimate the genetic similarity among the pairs of individuals, using Jaccard coefficient, and group them out for the UPGMA method. Also, the genetic structure and diversity of the populations were assessed using AMOVA. Of the 100 fragments generated, 29 of were polymorphic. A similarity average of 0.54 among the individuals was found and the amplitude similarities varied from 0.18 to 1.00. One of them (U5) was unit clusters and formed by the most divergent individuals. AMOVA indicated that there is more variation within (63%) the population. In conclusion, it was possible verify genetic variability in physic nut using RAPD markers at these experimental areas.
publishDate 2013
dc.date.none.fl_str_mv 2013-06-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782013000600006
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782013000600006
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0103-84782013005000060
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
publisher.none.fl_str_mv Universidade Federal de Santa Maria
dc.source.none.fl_str_mv Ciência Rural v.43 n.6 2013
reponame:Ciência Rural
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Ciência Rural
collection Ciência Rural
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repository.mail.fl_str_mv
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