Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos

Detalhes bibliográficos
Autor(a) principal: Viana, Luciane Ribeiro
Data de Publicação: 2007
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
dARK ID: ark:/26339/001300001094c
Texto Completo: http://repositorio.ufsm.br/handle/1/9994
Resumo: The bacterial identification in laboratories of microbiology is achieved by using several morphophysiological and genetic factors. Some members of the actinomycetes group, like the genera Rhodococcus, Gordonia, Nocardia and Dietzia have similar phenotypical characteristics. As result of this, the laboratorial detection of these microorganisms is often faced with bacterial identification problems. The present work analyzed 24 bacterial isolates from milk and skin of buffalo females (Bubalus bubalis), which previously had been identified as Rhodococcus equi, by using a restricted number of phenotypical tests for bacterial characterization. Using additional biochemical tests and molecular tools, the goal of this study was to perform the characterization of these isolates, as well as the differentiation of other microorganisms closely related. The results of the phenotypical tests had not allowed distinguishing definitely the isolates, once that they demonstrated relationship with two correlated genera, Rhodococcus and Dietzia. Despite the fact, these results allowed the separation of the isolates in three distinct biotypes. Only one of the isolates was confirmed as R. equi through the PCR multiplex specifically for this specie, as well DNA sequencing and DNA fragment analysis. All the other isolates only could be precisely identified after the DNA sequencing, where they were characterized as Dietzia maris. The sensitivity profile to antimicrobials demonstrated the biggest resistance of the D. maris isolates to oxacillin and rifampin, 96% and 87% respectively. The R. equi isolate, presented resistance to amikacin, oxacillin, penicillin, rifampin and tetracycline. Alert for the risk of the incorrect identification of the bacterial isolates by using diagnostic analysis based on phenotypical tests in order to differentiate R. equi and D. maris, besides the necessity to use of complementary tests for differentiation of these microorganisms.
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spelling Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinosPhenotypical and molecular identification of Rhodococcus equi and Dietzia maris in buffaloesRhodococcus sp.Dietzia sp.FenotipiaSeqüenciamento de DNAPhenotypic testDNA sequencingCNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIAThe bacterial identification in laboratories of microbiology is achieved by using several morphophysiological and genetic factors. Some members of the actinomycetes group, like the genera Rhodococcus, Gordonia, Nocardia and Dietzia have similar phenotypical characteristics. As result of this, the laboratorial detection of these microorganisms is often faced with bacterial identification problems. The present work analyzed 24 bacterial isolates from milk and skin of buffalo females (Bubalus bubalis), which previously had been identified as Rhodococcus equi, by using a restricted number of phenotypical tests for bacterial characterization. Using additional biochemical tests and molecular tools, the goal of this study was to perform the characterization of these isolates, as well as the differentiation of other microorganisms closely related. The results of the phenotypical tests had not allowed distinguishing definitely the isolates, once that they demonstrated relationship with two correlated genera, Rhodococcus and Dietzia. Despite the fact, these results allowed the separation of the isolates in three distinct biotypes. Only one of the isolates was confirmed as R. equi through the PCR multiplex specifically for this specie, as well DNA sequencing and DNA fragment analysis. All the other isolates only could be precisely identified after the DNA sequencing, where they were characterized as Dietzia maris. The sensitivity profile to antimicrobials demonstrated the biggest resistance of the D. maris isolates to oxacillin and rifampin, 96% and 87% respectively. The R. equi isolate, presented resistance to amikacin, oxacillin, penicillin, rifampin and tetracycline. Alert for the risk of the incorrect identification of the bacterial isolates by using diagnostic analysis based on phenotypical tests in order to differentiate R. equi and D. maris, besides the necessity to use of complementary tests for differentiation of these microorganisms.A identificação bacteriana em laboratórios de microbiologia é realizada pela observação de um conjunto de fatores morfofisiológicos e genéticos. Alguns membros do grupo dos actinomicetos, como os gêneros Rhodococcus, Gordonia, Nocardia e Dietzia possuem características fenotípicas semelhantes. Por conseqüência, a identificação microbiológica destes agentes pode enfrentar algumas dificuldades. Neste trabalho foram analisados 24 isolados bacterianos oriundos de leite e pele de búfalas (Bubalus bubalis), os quais foram previamente identificados como Rhodococcus equi, com o uso de um número restrito de testes fenotípicos considerados discriminatórios para a caracterização bacteriana. Com o auxílio de testes bioquímicos adicionais e de ferramentas moleculares objetivou-se neste estudo, realizar a caracterização desses isolados, bem como a diferenciação de outros microrganismos intimamente relacionados. Os resultados dos testes fenotípicos não permitiram identificar os isolados com clareza, uma vez que foram condizentes com dois gêneros relacionados, Rhodococcus e Dietzia. Apesar disso, esses resultados permitiram a separação dos isolados em três fenótipos distintos. Apenas um dos isolados foi comprovado como R. equi com a realização da PCR multiplex para esta espécie, por seqüenciamento e análise de fragmentos de DNA. Os demais isolados analisados somente puderam ser identificados com exatidão após o seqüenciamento do DNA, onde foram caracterizados como Dietzia maris. O perfil de susceptibilidade aos antimicrobianos revelou maior resistência dos isolados de D. maris para oxacilina e a rifampicina, 96% e 87% respectivamente. O isolado de R. equi, apresentou resistência à amicacina, oxacilina, penicilina, rifampicina e tetraciclina. Alerta-se para o risco da incorreta identificação dos isolados bacterianos pelo uso de análise diagnóstica baseada em testes fenotípicos, a fim de diferenciar R. equi e D. maris e para a necessidade de utilização de testes complementares para diferenciação destes microrganismos.Universidade Federal de Santa MariaBRMedicina VeterináriaUFSMPrograma de Pós-Graduação em Medicina VeterináriaVargas, Agueda Palmira Castagna dehttp://lattes.cnpq.br/1383126157031968Horner, Rosmarihttp://lattes.cnpq.br/5907084134183708Alves, Sydney Hartzhttp://lattes.cnpq.br/0330782478769631Viana, Luciane Ribeiro2017-06-142017-06-142007-08-28info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfapplication/pdfVIANA, Luciane Ribeiro. Phenotypical and molecular identification of Rhodococcus equi and Dietzia maris in buffaloes. 2007. 68 f. Dissertação (Mestrado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2007.http://repositorio.ufsm.br/handle/1/9994ark:/26339/001300001094cporinfo:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2022-08-22T14:13:44Zoai:repositorio.ufsm.br:1/9994Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2022-08-22T14:13:44Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
Phenotypical and molecular identification of Rhodococcus equi and Dietzia maris in buffaloes
title Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
spellingShingle Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
Viana, Luciane Ribeiro
Rhodococcus sp.
Dietzia sp.
Fenotipia
Seqüenciamento de DNA
Phenotypic test
DNA sequencing
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
title_short Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
title_full Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
title_fullStr Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
title_full_unstemmed Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
title_sort Identificação fenotípica e molecular de Rhodococcus equi e Dietzia maris em bubalinos
author Viana, Luciane Ribeiro
author_facet Viana, Luciane Ribeiro
author_role author
dc.contributor.none.fl_str_mv Vargas, Agueda Palmira Castagna de
http://lattes.cnpq.br/1383126157031968
Horner, Rosmari
http://lattes.cnpq.br/5907084134183708
Alves, Sydney Hartz
http://lattes.cnpq.br/0330782478769631
dc.contributor.author.fl_str_mv Viana, Luciane Ribeiro
dc.subject.por.fl_str_mv Rhodococcus sp.
Dietzia sp.
Fenotipia
Seqüenciamento de DNA
Phenotypic test
DNA sequencing
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
topic Rhodococcus sp.
Dietzia sp.
Fenotipia
Seqüenciamento de DNA
Phenotypic test
DNA sequencing
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
description The bacterial identification in laboratories of microbiology is achieved by using several morphophysiological and genetic factors. Some members of the actinomycetes group, like the genera Rhodococcus, Gordonia, Nocardia and Dietzia have similar phenotypical characteristics. As result of this, the laboratorial detection of these microorganisms is often faced with bacterial identification problems. The present work analyzed 24 bacterial isolates from milk and skin of buffalo females (Bubalus bubalis), which previously had been identified as Rhodococcus equi, by using a restricted number of phenotypical tests for bacterial characterization. Using additional biochemical tests and molecular tools, the goal of this study was to perform the characterization of these isolates, as well as the differentiation of other microorganisms closely related. The results of the phenotypical tests had not allowed distinguishing definitely the isolates, once that they demonstrated relationship with two correlated genera, Rhodococcus and Dietzia. Despite the fact, these results allowed the separation of the isolates in three distinct biotypes. Only one of the isolates was confirmed as R. equi through the PCR multiplex specifically for this specie, as well DNA sequencing and DNA fragment analysis. All the other isolates only could be precisely identified after the DNA sequencing, where they were characterized as Dietzia maris. The sensitivity profile to antimicrobials demonstrated the biggest resistance of the D. maris isolates to oxacillin and rifampin, 96% and 87% respectively. The R. equi isolate, presented resistance to amikacin, oxacillin, penicillin, rifampin and tetracycline. Alert for the risk of the incorrect identification of the bacterial isolates by using diagnostic analysis based on phenotypical tests in order to differentiate R. equi and D. maris, besides the necessity to use of complementary tests for differentiation of these microorganisms.
publishDate 2007
dc.date.none.fl_str_mv 2007-08-28
2017-06-14
2017-06-14
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv VIANA, Luciane Ribeiro. Phenotypical and molecular identification of Rhodococcus equi and Dietzia maris in buffaloes. 2007. 68 f. Dissertação (Mestrado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2007.
http://repositorio.ufsm.br/handle/1/9994
dc.identifier.dark.fl_str_mv ark:/26339/001300001094c
identifier_str_mv VIANA, Luciane Ribeiro. Phenotypical and molecular identification of Rhodococcus equi and Dietzia maris in buffaloes. 2007. 68 f. Dissertação (Mestrado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2007.
ark:/26339/001300001094c
url http://repositorio.ufsm.br/handle/1/9994
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
BR
Medicina Veterinária
UFSM
Programa de Pós-Graduação em Medicina Veterinária
publisher.none.fl_str_mv Universidade Federal de Santa Maria
BR
Medicina Veterinária
UFSM
Programa de Pós-Graduação em Medicina Veterinária
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Manancial - Repositório Digital da UFSM
collection Manancial - Repositório Digital da UFSM
repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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