Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster

Detalhes bibliográficos
Autor(a) principal: Stoffel, Tailini Jordana Reinehr
Data de Publicação: 2016
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/17618
Resumo: One of transposons families most well-known is the mariner family. mariner is not found in natural populations of Drosophila melanogaster, however, white-peach mariner and Mos1 were introduced in this species by genetic transformation. In the last decade, significant advances have been made in the understanding the epigenetic control of transposable elements. The major regulators in Drosophila TEs are piRNAs from piRNA clusters. These can suppress TEs either by post transcriptional gene silencing, from the cleavage of transcripts of an TE, as by transcriptional silencing of genes through changes in chromatin. Therefore, this dissertation aimed to investigate the existence of epigenetic white gene inactivation in D. melanogaster mediated by mariner element presence in the white-peach line. To assess the activity of the mariner element in natural populations of D. melanogaster were made isofemale strains. For analysis of gene inactivation of white phenotypic tests were performed by experimental crosses. One white eye strain with inactive white gene, but with active mariner, also been established. In order to verify the gene expression in different white lines of D. melanogaster, and to detect the presence of mariner element into the genome of D. melanogaster, isofemale strains were quantified by RT-qPCR. In silico searches for mariner in a piRNAs database and following the piRNA flamenco cluster were carried out to check if there is a cluster of piRNA for mariner in D. melanogaster. mariner had a very high expression in populations of D. melanogaster analyzed. Furthermore, phenotypic testing point to the white-mediated gene inactivation the presence of mariner through heterochromatin formation because the F2 breeding carried out showed flies with wild eye, peach until pure white. These data corroborate the results found by RT-qPCR. It found no similar sequence in the mariner piRNA database and Flamenco or in sequence, however, the existence of a cluster piRNA still can not be excluded as new clusters can still be discovered. The copy number mariner was very variable between the lineage of individuals with active and inactive mariner white gene, ranging from 3 to 15 copies per individual, which was expected by the fact that this line was established shortly.
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spelling Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogasterEpigenetic control of the transposition element mariner in Drosophila melanogaster populationsElemento transponível marinerDrosophila melanogaster white-peachpiRNAClusters de piRNAsTransposable element marinerCNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICAOne of transposons families most well-known is the mariner family. mariner is not found in natural populations of Drosophila melanogaster, however, white-peach mariner and Mos1 were introduced in this species by genetic transformation. In the last decade, significant advances have been made in the understanding the epigenetic control of transposable elements. The major regulators in Drosophila TEs are piRNAs from piRNA clusters. These can suppress TEs either by post transcriptional gene silencing, from the cleavage of transcripts of an TE, as by transcriptional silencing of genes through changes in chromatin. Therefore, this dissertation aimed to investigate the existence of epigenetic white gene inactivation in D. melanogaster mediated by mariner element presence in the white-peach line. To assess the activity of the mariner element in natural populations of D. melanogaster were made isofemale strains. For analysis of gene inactivation of white phenotypic tests were performed by experimental crosses. One white eye strain with inactive white gene, but with active mariner, also been established. In order to verify the gene expression in different white lines of D. melanogaster, and to detect the presence of mariner element into the genome of D. melanogaster, isofemale strains were quantified by RT-qPCR. In silico searches for mariner in a piRNAs database and following the piRNA flamenco cluster were carried out to check if there is a cluster of piRNA for mariner in D. melanogaster. mariner had a very high expression in populations of D. melanogaster analyzed. Furthermore, phenotypic testing point to the white-mediated gene inactivation the presence of mariner through heterochromatin formation because the F2 breeding carried out showed flies with wild eye, peach until pure white. These data corroborate the results found by RT-qPCR. It found no similar sequence in the mariner piRNA database and Flamenco or in sequence, however, the existence of a cluster piRNA still can not be excluded as new clusters can still be discovered. The copy number mariner was very variable between the lineage of individuals with active and inactive mariner white gene, ranging from 3 to 15 copies per individual, which was expected by the fact that this line was established shortly.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESUma das famílias de transposons mais bem conhecidas é a família mariner. mariner não é encontrado em populações naturais de Drosophila melanogaster, entretanto, mariner white-peach e Mos1 foram introduzidos nessa espécie por transformação genética. Na ultima década, avanços importantes foram feitos na compreensão sobre o controle epigenético dos elementos transponíveis. Os maiores reguladores de TEs em Drosophila são os piRNAs que são provenientes de clusters de piRNA. Esses podem reprimir os TEs tanto pelo silenciamento gênico pós transcricional, a partir da clivagem dos transcritos de um TE ativo, quanto pelo transcricional por meio do silenciamento dos genes por modificações na cromatina. Sendo assim, essa dissertação teve como objetivo verificar se ocorre a inativação epigenética do gene white em D. melanogaster mediado pela presença do elemento mariner na linhagem white-peach. Para avaliar a atividade do elemento mariner em populações naturais de D. melanogaster foram feitas isolinhagens. Para análise da inativação do gene white foram realizados testes fenotípicos por meio de cruzamentos experimentais. Também foi estabelecida uma linhagem de olho branco com gene white inativo mas com mariner ativo. A fim de verificar a expressão do gene white nas diferentes linhagens de D. melanogaster e para detectar a presença do elemento mariner no genoma das isolinhagens de D. melanogaster, foi realizada a quantificação por RT-qPCR. Buscas in sílico por mariner em um banco de dados de piRNAs e na sequência do cluster de piRNA flamenco foram realizadas para verificar se existe um cluster de piRNA para mariner em D. melanogaster. mariner teve uma expressão muito alta nas populações de D. melanogaster. Além disso, os testes fenotípicos apontam para a inativação do gene white mediado pela presença de mariner, pela formação de heterocromatina, pois a F2 dos cruzamentos realizados apresentaram moscas com olho selvagem, peach até branco puro. Esses dados corroboram com os resultados encontrados por RT-qPCR. Não foi encontrada nenhuma sequência similar a mariner no banco de piRNA e nem na sequência de flamenco, entretanto, a existência de um cluster de piRNA ainda não pode ser excluída pois novos clusters podem ainda ser descobertos. O número de cópias de mariner foi bem variável entre os indivíduos da linhagem com mariner ativo e gene white inativo, variando de 3 a 15 cópias por indivíduo, o que já era esperado pelo fato de que essa linhagem foi estabelecida a pouco tempo.Universidade Federal de Santa MariaBrasilBioquímicaUFSMPrograma de Pós-Graduação em Biodiversidade AnimalCentro de Ciências Naturais e ExatasLoreto, Elgion Lucio da Silvahttp://lattes.cnpq.br/6493669115018157Deprá, Maríndiahttp://lattes.cnpq.br/8576089809365637D'Ávila, Marícia Fantinelhttp://lattes.cnpq.br/7930575466716624Stoffel, Tailini Jordana Reinehr2019-07-30T19:02:28Z2019-07-30T19:02:28Z2016-05-31info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://repositorio.ufsm.br/handle/1/17618porAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2019-07-31T06:00:31Zoai:repositorio.ufsm.br:1/17618Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2019-07-31T06:00:31Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
Epigenetic control of the transposition element mariner in Drosophila melanogaster populations
title Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
spellingShingle Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
Stoffel, Tailini Jordana Reinehr
Elemento transponível mariner
Drosophila melanogaster white-peach
piRNA
Clusters de piRNAs
Transposable element mariner
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
title_short Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
title_full Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
title_fullStr Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
title_full_unstemmed Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
title_sort Controle epigenético do elemento de transposição mariner em populações de Drosophila melanogaster
author Stoffel, Tailini Jordana Reinehr
author_facet Stoffel, Tailini Jordana Reinehr
author_role author
dc.contributor.none.fl_str_mv Loreto, Elgion Lucio da Silva
http://lattes.cnpq.br/6493669115018157
Deprá, Maríndia
http://lattes.cnpq.br/8576089809365637
D'Ávila, Marícia Fantinel
http://lattes.cnpq.br/7930575466716624
dc.contributor.author.fl_str_mv Stoffel, Tailini Jordana Reinehr
dc.subject.por.fl_str_mv Elemento transponível mariner
Drosophila melanogaster white-peach
piRNA
Clusters de piRNAs
Transposable element mariner
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
topic Elemento transponível mariner
Drosophila melanogaster white-peach
piRNA
Clusters de piRNAs
Transposable element mariner
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
description One of transposons families most well-known is the mariner family. mariner is not found in natural populations of Drosophila melanogaster, however, white-peach mariner and Mos1 were introduced in this species by genetic transformation. In the last decade, significant advances have been made in the understanding the epigenetic control of transposable elements. The major regulators in Drosophila TEs are piRNAs from piRNA clusters. These can suppress TEs either by post transcriptional gene silencing, from the cleavage of transcripts of an TE, as by transcriptional silencing of genes through changes in chromatin. Therefore, this dissertation aimed to investigate the existence of epigenetic white gene inactivation in D. melanogaster mediated by mariner element presence in the white-peach line. To assess the activity of the mariner element in natural populations of D. melanogaster were made isofemale strains. For analysis of gene inactivation of white phenotypic tests were performed by experimental crosses. One white eye strain with inactive white gene, but with active mariner, also been established. In order to verify the gene expression in different white lines of D. melanogaster, and to detect the presence of mariner element into the genome of D. melanogaster, isofemale strains were quantified by RT-qPCR. In silico searches for mariner in a piRNAs database and following the piRNA flamenco cluster were carried out to check if there is a cluster of piRNA for mariner in D. melanogaster. mariner had a very high expression in populations of D. melanogaster analyzed. Furthermore, phenotypic testing point to the white-mediated gene inactivation the presence of mariner through heterochromatin formation because the F2 breeding carried out showed flies with wild eye, peach until pure white. These data corroborate the results found by RT-qPCR. It found no similar sequence in the mariner piRNA database and Flamenco or in sequence, however, the existence of a cluster piRNA still can not be excluded as new clusters can still be discovered. The copy number mariner was very variable between the lineage of individuals with active and inactive mariner white gene, ranging from 3 to 15 copies per individual, which was expected by the fact that this line was established shortly.
publishDate 2016
dc.date.none.fl_str_mv 2016-05-31
2019-07-30T19:02:28Z
2019-07-30T19:02:28Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/17618
url http://repositorio.ufsm.br/handle/1/17618
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Biodiversidade Animal
Centro de Ciências Naturais e Exatas
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Biodiversidade Animal
Centro de Ciências Naturais e Exatas
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Manancial - Repositório Digital da UFSM
collection Manancial - Repositório Digital da UFSM
repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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