Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis

Detalhes bibliográficos
Autor(a) principal: Farias, Luana D'Avila
Data de Publicação: 2015
Tipo de documento: Tese
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/4115
Resumo: Historically, infectious bovine keratoconjunctivitis (IBK) was believed to be under the exclusive competence of Moraxella bovis. However, the roles of other species of Genus Moraxella are also being considered in the pathogenesis of IBK, such as Moraxella ovis and particularly Moraxella bovoculi. This thesis describes phylogenetic and genotypic analysis based on the genes encoding type IV pili Q- and I-type (TfpQ/I) of M. bovis and cytotoxin of M. bovis (MbxA), M. bovoculi (MbvA) and M. ovis (MovA). The distinction between M. bovis, M. bovoculi and M. ovis was previously performed by PCR (16S-23S intergenic region) according to the protocol established in the literature. Then, there is described a molecular analysis based on the 3' region of genes tfpQ/I (including α1-C N-terminal subdomain and C-terminal domain) of 16 field strains and five vaccine strains of M. bovis from South America. All 47 sequences of tfp Q- and I-type genes analyzed resulted in 31 alleles designated 1 to 31. The phylogenetic reconstruction resulted in a distinction of 31 alleles in eleven groups (designated A through J and Epp). The analysis of the deduced amino acid sequence (aa) of the C-terminal region showed similarity levels between 67 and 100% within the groups, while the analysis of the D region (C-terminal subunit) resulted in levels of similarity between 60 and 100%. In addition, a phylogenetic analysis based on the 3' region of the cytotoxin gene was performed to investigate the genetic relationship among M. bovis (n = 17), M. bovoculi (n = 11) and M. ovis (n = 7) strains and reference strains. Phylogenetic reconstruction allowed the differentiation among species, and the older M. bovoculi strains remained in branch closer to M. bovis strains. The amino acid similarity level among the MbxA sequences stood at an average of 99.9%, while among the MbvA and MovA sequences the similarity was respectively 98.8% and 99.3%. The similarity between MbvA and MovA was 96.6%, while MbxA for MbvA and MovA was 77.6%. Thus, it is possible to conclude that the tfp gene may be inferred suitable for differentiate among M. bovis strains, while the cytotoxin-encoding gene is suitable for phylogenetic classification of M. bovis, M. bovoculi and M. ovis strains and perhaps for understanding the evolutionary relationships among three species.
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spelling Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovisGenotypic analysis and phylogeny based on type IV pilus gene of Moraxella bovis and cytotoxin gene of M. bovis, Moraxella bovoculi and Moraxella ovisCIBT4pPilAToxinas RTXHemolisinaCitolisinaFilogeniaPinkeyeT4pPilARTX toxinHemolysinCytolysinPhylogenyCNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIAHistorically, infectious bovine keratoconjunctivitis (IBK) was believed to be under the exclusive competence of Moraxella bovis. However, the roles of other species of Genus Moraxella are also being considered in the pathogenesis of IBK, such as Moraxella ovis and particularly Moraxella bovoculi. This thesis describes phylogenetic and genotypic analysis based on the genes encoding type IV pili Q- and I-type (TfpQ/I) of M. bovis and cytotoxin of M. bovis (MbxA), M. bovoculi (MbvA) and M. ovis (MovA). The distinction between M. bovis, M. bovoculi and M. ovis was previously performed by PCR (16S-23S intergenic region) according to the protocol established in the literature. Then, there is described a molecular analysis based on the 3' region of genes tfpQ/I (including α1-C N-terminal subdomain and C-terminal domain) of 16 field strains and five vaccine strains of M. bovis from South America. All 47 sequences of tfp Q- and I-type genes analyzed resulted in 31 alleles designated 1 to 31. The phylogenetic reconstruction resulted in a distinction of 31 alleles in eleven groups (designated A through J and Epp). The analysis of the deduced amino acid sequence (aa) of the C-terminal region showed similarity levels between 67 and 100% within the groups, while the analysis of the D region (C-terminal subunit) resulted in levels of similarity between 60 and 100%. In addition, a phylogenetic analysis based on the 3' region of the cytotoxin gene was performed to investigate the genetic relationship among M. bovis (n = 17), M. bovoculi (n = 11) and M. ovis (n = 7) strains and reference strains. Phylogenetic reconstruction allowed the differentiation among species, and the older M. bovoculi strains remained in branch closer to M. bovis strains. The amino acid similarity level among the MbxA sequences stood at an average of 99.9%, while among the MbvA and MovA sequences the similarity was respectively 98.8% and 99.3%. The similarity between MbvA and MovA was 96.6%, while MbxA for MbvA and MovA was 77.6%. Thus, it is possible to conclude that the tfp gene may be inferred suitable for differentiate among M. bovis strains, while the cytotoxin-encoding gene is suitable for phylogenetic classification of M. bovis, M. bovoculi and M. ovis strains and perhaps for understanding the evolutionary relationships among three species.Historicamente, acreditava-se que a ceratoconjuntivite infecciosa bovina (CIB) estáva sob competência exclusiva de Moraxella bovis. Contudo, outras espécies do Gênero Moraxella também vêm sendo estudadas quanto à participação na patogenia da CIB, como Moraxella ovis e principalmente Moraxella bovoculi. Esta tese descreve análises filogenéticas e de dados genotípicos com base nos genes codificadores dos pili tipo IV dos tipos Q e I (TfpQ/I) de M. bovis e da citotoxina de M. bovis (MbxA), M. bovoculi (MbvA) e M. ovis (MovA). A diferenciação entre M. bovis, M. bovoculi e M. ovis foi previamente realizada por PCR (região intergenica 16S-23S) conforme protocolo estabelecido na literatura. Após, é descrita uma análise molecular com base na região 3' dos genes tfpQ/I (compreendendo subdomínio α1-C N-terminal e o domínio C-terminal) de 16 isolados de campo e cinco cepas vacinais de M. bovis, provenientes da América do Sul. Todas as 47 sequencias do gene tfp tipo Q e tipo I analisadas resultaram em 31 alelos designados de 1 até 31. A reconstrução filogenética resultou em uma distinção dos 31 alelos em onze grupos (designados de A até J e Epp). A análise da sequencia de aminoácidos (aa) deduzidos da região C-terminal mostrou níveis de similaridade entre 67 e 100% dentro dos grupos, enquanto a análise da região D (subunidade C-terminal) resultou níveis de similaridade entre 60 e 100%. Além disso, um estudo filogenético com base na região 3' dos genes da citotoxina foi realizado para investigar a relação genética entre os isolados de M. bovis (n = 17), M. bovoculi (n = 11) e M. ovis (n = 7) e cepas de referência. A reconstrução filogenética permitiu a diferenciação entre as espécies, sendo que os isolados mais antigos de M. bovoculi permaneceram em ramo mais próximos aos isolados de M. bovis. O nível de similaridade de aminoácidos entre as sequencias de MbxA ficou em 99.9% de média, enquanto entre as sequencias de MbvA e MovA foi respectivamente de 98.8% e 99.3%. A similaridade entre MbvA e MovA foi de 96.6%, enquanto MbxA em relação a MbvA e MovA foi de 77.6%. Assim, é possível concluir que o gene tfp pode ser adequado para inferir distinção entre os isolados de M. bovis, enquanto o gene codificador da citotoxina é adequado para classificação filogenéticas dos isolados de M. bovis, M. bovoculi e M. ovis, e, talvez para a compreensão das relações evolutivas.Universidade Federal de Santa MariaBRMedicina VeterináriaUFSMPrograma de Pós-Graduação em Medicina VeterináriaVargas, Agueda Palmira Castagna dehttp://lattes.cnpq.br/1383126157031968Scherer, Charles Fernando Capinoshttp://lattes.cnpq.br/1396090596936396Spilki, Fernando Rosadohttp://lattes.cnpq.br/3481593940960227Matter, Leticia Beatrizhttp://lattes.cnpq.br/4288660833939683Frandoloso, Rafaelhttp://lattes.cnpq.br/2502891354017410Farias, Luana D'Avila2017-06-132017-06-132015-01-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfapplication/pdfFARIAS, Luana D avila. Genotypic analysis and phylogeny based on type IV pilus gene of Moraxella bovis and cytotoxin gene of M. bovis, Moraxella bovoculi and Moraxella ovis. 2015. 121 f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2015.http://repositorio.ufsm.br/handle/1/4115porinfo:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2022-04-08T19:18:15Zoai:repositorio.ufsm.br:1/4115Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2022-04-08T19:18:15Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
Genotypic analysis and phylogeny based on type IV pilus gene of Moraxella bovis and cytotoxin gene of M. bovis, Moraxella bovoculi and Moraxella ovis
title Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
spellingShingle Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
Farias, Luana D'Avila
CIB
T4p
PilA
Toxinas RTX
Hemolisina
Citolisina
Filogenia
Pinkeye
T4p
PilA
RTX toxin
Hemolysin
Cytolysin
Phylogeny
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
title_short Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
title_full Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
title_fullStr Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
title_full_unstemmed Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
title_sort Análise genotípica e filogenética com base nos genes do pilus tipo IV de Moraxella bovis e da citotoxina de M. bovis, Moraxella bovoculi e Moraxella ovis
author Farias, Luana D'Avila
author_facet Farias, Luana D'Avila
author_role author
dc.contributor.none.fl_str_mv Vargas, Agueda Palmira Castagna de
http://lattes.cnpq.br/1383126157031968
Scherer, Charles Fernando Capinos
http://lattes.cnpq.br/1396090596936396
Spilki, Fernando Rosado
http://lattes.cnpq.br/3481593940960227
Matter, Leticia Beatriz
http://lattes.cnpq.br/4288660833939683
Frandoloso, Rafael
http://lattes.cnpq.br/2502891354017410
dc.contributor.author.fl_str_mv Farias, Luana D'Avila
dc.subject.por.fl_str_mv CIB
T4p
PilA
Toxinas RTX
Hemolisina
Citolisina
Filogenia
Pinkeye
T4p
PilA
RTX toxin
Hemolysin
Cytolysin
Phylogeny
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
topic CIB
T4p
PilA
Toxinas RTX
Hemolisina
Citolisina
Filogenia
Pinkeye
T4p
PilA
RTX toxin
Hemolysin
Cytolysin
Phylogeny
CNPQ::CIENCIAS AGRARIAS::MEDICINA VETERINARIA
description Historically, infectious bovine keratoconjunctivitis (IBK) was believed to be under the exclusive competence of Moraxella bovis. However, the roles of other species of Genus Moraxella are also being considered in the pathogenesis of IBK, such as Moraxella ovis and particularly Moraxella bovoculi. This thesis describes phylogenetic and genotypic analysis based on the genes encoding type IV pili Q- and I-type (TfpQ/I) of M. bovis and cytotoxin of M. bovis (MbxA), M. bovoculi (MbvA) and M. ovis (MovA). The distinction between M. bovis, M. bovoculi and M. ovis was previously performed by PCR (16S-23S intergenic region) according to the protocol established in the literature. Then, there is described a molecular analysis based on the 3' region of genes tfpQ/I (including α1-C N-terminal subdomain and C-terminal domain) of 16 field strains and five vaccine strains of M. bovis from South America. All 47 sequences of tfp Q- and I-type genes analyzed resulted in 31 alleles designated 1 to 31. The phylogenetic reconstruction resulted in a distinction of 31 alleles in eleven groups (designated A through J and Epp). The analysis of the deduced amino acid sequence (aa) of the C-terminal region showed similarity levels between 67 and 100% within the groups, while the analysis of the D region (C-terminal subunit) resulted in levels of similarity between 60 and 100%. In addition, a phylogenetic analysis based on the 3' region of the cytotoxin gene was performed to investigate the genetic relationship among M. bovis (n = 17), M. bovoculi (n = 11) and M. ovis (n = 7) strains and reference strains. Phylogenetic reconstruction allowed the differentiation among species, and the older M. bovoculi strains remained in branch closer to M. bovis strains. The amino acid similarity level among the MbxA sequences stood at an average of 99.9%, while among the MbvA and MovA sequences the similarity was respectively 98.8% and 99.3%. The similarity between MbvA and MovA was 96.6%, while MbxA for MbvA and MovA was 77.6%. Thus, it is possible to conclude that the tfp gene may be inferred suitable for differentiate among M. bovis strains, while the cytotoxin-encoding gene is suitable for phylogenetic classification of M. bovis, M. bovoculi and M. ovis strains and perhaps for understanding the evolutionary relationships among three species.
publishDate 2015
dc.date.none.fl_str_mv 2015-01-16
2017-06-13
2017-06-13
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv FARIAS, Luana D avila. Genotypic analysis and phylogeny based on type IV pilus gene of Moraxella bovis and cytotoxin gene of M. bovis, Moraxella bovoculi and Moraxella ovis. 2015. 121 f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2015.
http://repositorio.ufsm.br/handle/1/4115
identifier_str_mv FARIAS, Luana D avila. Genotypic analysis and phylogeny based on type IV pilus gene of Moraxella bovis and cytotoxin gene of M. bovis, Moraxella bovoculi and Moraxella ovis. 2015. 121 f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Santa Maria, Santa Maria, 2015.
url http://repositorio.ufsm.br/handle/1/4115
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
BR
Medicina Veterinária
UFSM
Programa de Pós-Graduação em Medicina Veterinária
publisher.none.fl_str_mv Universidade Federal de Santa Maria
BR
Medicina Veterinária
UFSM
Programa de Pós-Graduação em Medicina Veterinária
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Manancial - Repositório Digital da UFSM
collection Manancial - Repositório Digital da UFSM
repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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