Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate

Detalhes bibliográficos
Autor(a) principal: Mezzomo, Ricardo
Data de Publicação: 2017
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações do UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/13319
Resumo: The cultivation of Yerba-mate (Ilex paraguariensis) has intensified in the state of Rio Grande do Sul, due to the valorization of the price paid to the producer. However, the demand for studies related to the pathosystem Fusarium x yerba-mate is still insufficient, so that many producers have faced significant losses in the production of the plantations. Given the above, the aim of this study was to characterize the causal agent of rot-of-roots in Yerba-mate (I. paraguariensis). The following specific objectives were established: a) to select efficient morphological characters in the separation of the pathogenic isolates by groups of similarity b) to evaluate the sequencing of different regions of the genome in the identification of the pathogenic isolates at a species level c) to identify the formation of vegetative compatibility groups (VCG) among the pathogenic isolates d) to investigate the enzymatic arsenal of the pathogenic isolates. Therefore, samples were taken in five municipalities of the state, for the pathogen isolation. In addition, soil samples were collected for the area characterization and also for the geo-referencing of collection points. Fusarium spp. isolates were tested for their pathogenicity through substrate inoculation. It was not possible to associate the chemical properties of the soil of the collected areas with the pathogenicity of the isolates in commercial substrates. The 39 isolates were morphologically characterized through the variables of mycelial growth, sporulation, length and width of macroconidia, shape of microconidia, pigmentation of the colonies and formation of chlamydospores. The variables used in the morphological characterization were efficient in the discrimination for seven groups of isolates, especially length of macroconidia associated with sporulation. There were identified seven pathogenic isolates of Fusarium spp. The pathogenic isolates were also identified molecularly by sequencing the ITS, TEF-1 and β-tubulin regions. The sequencing of the ITS, TEF-1α and β-tubulin regions, consolidated the separation between the pathogenic isolates in F. solani and F. oxysporum. For the same isolates, the technique to obtain nit mutants is suitable for henotypic classification, which is fundamental in the VCG tests for Fusarium species. Five VCGs were obtained. The pathogenic isolates of Fusarium spp. produced extracellular enzymes catalase, laccase, cellulase, caseinase, amylase, protease, lipase, polygalacturonase and pectate lyase.
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spelling 2018-06-06T22:07:46Z2018-06-06T22:07:46Z2017-02-17http://repositorio.ufsm.br/handle/1/13319The cultivation of Yerba-mate (Ilex paraguariensis) has intensified in the state of Rio Grande do Sul, due to the valorization of the price paid to the producer. However, the demand for studies related to the pathosystem Fusarium x yerba-mate is still insufficient, so that many producers have faced significant losses in the production of the plantations. Given the above, the aim of this study was to characterize the causal agent of rot-of-roots in Yerba-mate (I. paraguariensis). The following specific objectives were established: a) to select efficient morphological characters in the separation of the pathogenic isolates by groups of similarity b) to evaluate the sequencing of different regions of the genome in the identification of the pathogenic isolates at a species level c) to identify the formation of vegetative compatibility groups (VCG) among the pathogenic isolates d) to investigate the enzymatic arsenal of the pathogenic isolates. Therefore, samples were taken in five municipalities of the state, for the pathogen isolation. In addition, soil samples were collected for the area characterization and also for the geo-referencing of collection points. Fusarium spp. isolates were tested for their pathogenicity through substrate inoculation. It was not possible to associate the chemical properties of the soil of the collected areas with the pathogenicity of the isolates in commercial substrates. The 39 isolates were morphologically characterized through the variables of mycelial growth, sporulation, length and width of macroconidia, shape of microconidia, pigmentation of the colonies and formation of chlamydospores. The variables used in the morphological characterization were efficient in the discrimination for seven groups of isolates, especially length of macroconidia associated with sporulation. There were identified seven pathogenic isolates of Fusarium spp. The pathogenic isolates were also identified molecularly by sequencing the ITS, TEF-1 and β-tubulin regions. The sequencing of the ITS, TEF-1α and β-tubulin regions, consolidated the separation between the pathogenic isolates in F. solani and F. oxysporum. For the same isolates, the technique to obtain nit mutants is suitable for henotypic classification, which is fundamental in the VCG tests for Fusarium species. Five VCGs were obtained. The pathogenic isolates of Fusarium spp. produced extracellular enzymes catalase, laccase, cellulase, caseinase, amylase, protease, lipase, polygalacturonase and pectate lyase.O cultivo da erva-mate (Ilex paraguariensis) tem se intensificado no estado do Rio Grande do Sul, fruto da valorização do preço pago ao produtor. Conduto, a demanda de estudos relacionados ao patossistema Fusarium x erva-mate ainda são insuficientes, de modo que muitos produtores têm enfrentado perdas significativas na produção dos ervais. Diante do exposto, o objetivo geral deste trabalho foi caracterizar o agente causal da podridão-de-raízes da erva-mate (I. paraguariensis). Como objetivos específicos estabeleceram-se os seguintes: a) selecionar caracteres morfofisiológicos eficientes na separação dos isolados em grupos de similaridade; b) avaliar o sequenciamento de diferentes regiões do genoma na identificação dos isolados patogênicos em nível de espécie; c) identificar a formação de grupos de compatibilidade vegetativa (VCG) entre os isolados patogênicos; d) investigar o arsenal enzimático dos isolados patogênicos. Para tanto, foram realizadas coletas em cinco municípios do estado, para isolamento do patógeno. Além disso, foram coletadas amostras de solo para a caracterização da área e também o georreferenciamento dos pontos de coleta. Os isolados de Fusarium spp., foram testados quanto a sua patogenicidade através da inoculação em substrato. Não foi possível associar as propriedades químicas do solo das áreas de coleta com a patogenicidade dos isolados em substrato comercial. Os 39 isolados foram caracterizados morfologicamente através das variáveis crescimento micelial, esporulação, comprimento e largura dos macroconídios, formato dos microconídios, pigmentação das colônias e formação de clamidósporos. As variáveis utilizadas na caracterização morfológica foram eficientes na discriminação em sete grupos de isolados, especialmente comprimento dos macroconídios associado a esporulação. Foram identificados sete isolados patogênicos de Fusarium spp. Os isolados patogênicos também foram identificados molecularmente através de sequenciamento das regiões do gene ITS, TEF-1 e β-tubulina. O sequenciamento das regiões ITS, TEF-1α e β-tubulina, consolidou a separação entre os isolados patogênicos em F. solani e F. oxysporum. Para os mesmos isolados a técnica para obtenção de mutantes nit é adequada para a classificação fenótipica, fundamentais nos testes de VCG para espécies de Fusarium. Foram obtidos cinco VCG‟s. Os isolado patogênicos de Fusarium spp. produziram as enzimas extracelulares catalase, lacase, celulase, caseinase, amilase, protease, lipase, poligalacturonase e pectato liase.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESporUniversidade Federal de Santa MariaCentro de Ciências RuraisPrograma de Pós-Graduação em Engenharia FlorestalUFSMBrasilRecursos Florestais e Engenharia FlorestalAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessIlex paraguariensisUPGMAPatogenicidadePathogenicityCNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTALCaracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mateMorphological, molecular, enzymatic characterization and vegetative compatibility of Fusarium oxysporum and F. solani in yerba-mateinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisMuniz, Marlove Fatima Briãohttp://lattes.cnpq.br/3148312031889388Santos, Álvaro Figueredo doshttp://lattes.cnpq.br/1181199965618168Poletto, Igorhttp://lattes.cnpq.br/5851156257793439Milanesi, Paola Mendeshttp://lattes.cnpq.br/5448205426679668Kulczynski, Stela Marishttp://lattes.cnpq.br/0604511258822899http://lattes.cnpq.br/9324287744602947Mezzomo, Ricardo500200000003600e8de5014-a63f-4739-8254-6b23c08bcd59ea9f69c6-ce05-44bb-a3c6-ad627f974e054357586a-62a1-40b1-bec9-5e034eccf7fa5dfc8864-aaf7-44f5-b487-910c74a8a17a500e61ea-7453-437a-bef6-d3812473364ba1e2b949-ec43-4346-9e04-b4d0422d4b70reponame:Biblioteca Digital de Teses e Dissertações do UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSMORIGINALTES_PPGEF_2017_MEZZOMO_RICARDO.pdfTES_PPGEF_2017_MEZZOMO_RICARDO.pdfTese de Doutoradoapplication/pdf1619767http://repositorio.ufsm.br/bitstream/1/13319/1/TES_PPGEF_2017_MEZZOMO_RICARDO.pdf7d3e3e7b7d624ec7215d6a4c3e8e0a49MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; 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dc.title.por.fl_str_mv Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
dc.title.alternative.eng.fl_str_mv Morphological, molecular, enzymatic characterization and vegetative compatibility of Fusarium oxysporum and F. solani in yerba-mate
title Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
spellingShingle Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
Mezzomo, Ricardo
Ilex paraguariensis
UPGMA
Patogenicidade
Pathogenicity
CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
title_short Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
title_full Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
title_fullStr Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
title_full_unstemmed Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
title_sort Caracterização morfofisiológica, molecular, enzimática e compatibilidade vegetativa de Fusarium oxysporum e F. solani em erva-mate
author Mezzomo, Ricardo
author_facet Mezzomo, Ricardo
author_role author
dc.contributor.advisor1.fl_str_mv Muniz, Marlove Fatima Brião
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3148312031889388
dc.contributor.referee1.fl_str_mv Santos, Álvaro Figueredo dos
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/1181199965618168
dc.contributor.referee2.fl_str_mv Poletto, Igor
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/5851156257793439
dc.contributor.referee3.fl_str_mv Milanesi, Paola Mendes
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/5448205426679668
dc.contributor.referee4.fl_str_mv Kulczynski, Stela Maris
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/0604511258822899
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9324287744602947
dc.contributor.author.fl_str_mv Mezzomo, Ricardo
contributor_str_mv Muniz, Marlove Fatima Brião
Santos, Álvaro Figueredo dos
Poletto, Igor
Milanesi, Paola Mendes
Kulczynski, Stela Maris
dc.subject.por.fl_str_mv Ilex paraguariensis
UPGMA
Patogenicidade
topic Ilex paraguariensis
UPGMA
Patogenicidade
Pathogenicity
CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
dc.subject.eng.fl_str_mv Pathogenicity
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
description The cultivation of Yerba-mate (Ilex paraguariensis) has intensified in the state of Rio Grande do Sul, due to the valorization of the price paid to the producer. However, the demand for studies related to the pathosystem Fusarium x yerba-mate is still insufficient, so that many producers have faced significant losses in the production of the plantations. Given the above, the aim of this study was to characterize the causal agent of rot-of-roots in Yerba-mate (I. paraguariensis). The following specific objectives were established: a) to select efficient morphological characters in the separation of the pathogenic isolates by groups of similarity b) to evaluate the sequencing of different regions of the genome in the identification of the pathogenic isolates at a species level c) to identify the formation of vegetative compatibility groups (VCG) among the pathogenic isolates d) to investigate the enzymatic arsenal of the pathogenic isolates. Therefore, samples were taken in five municipalities of the state, for the pathogen isolation. In addition, soil samples were collected for the area characterization and also for the geo-referencing of collection points. Fusarium spp. isolates were tested for their pathogenicity through substrate inoculation. It was not possible to associate the chemical properties of the soil of the collected areas with the pathogenicity of the isolates in commercial substrates. The 39 isolates were morphologically characterized through the variables of mycelial growth, sporulation, length and width of macroconidia, shape of microconidia, pigmentation of the colonies and formation of chlamydospores. The variables used in the morphological characterization were efficient in the discrimination for seven groups of isolates, especially length of macroconidia associated with sporulation. There were identified seven pathogenic isolates of Fusarium spp. The pathogenic isolates were also identified molecularly by sequencing the ITS, TEF-1 and β-tubulin regions. The sequencing of the ITS, TEF-1α and β-tubulin regions, consolidated the separation between the pathogenic isolates in F. solani and F. oxysporum. For the same isolates, the technique to obtain nit mutants is suitable for henotypic classification, which is fundamental in the VCG tests for Fusarium species. Five VCGs were obtained. The pathogenic isolates of Fusarium spp. produced extracellular enzymes catalase, laccase, cellulase, caseinase, amylase, protease, lipase, polygalacturonase and pectate lyase.
publishDate 2017
dc.date.issued.fl_str_mv 2017-02-17
dc.date.accessioned.fl_str_mv 2018-06-06T22:07:46Z
dc.date.available.fl_str_mv 2018-06-06T22:07:46Z
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rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
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dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Rurais
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Engenharia Florestal
dc.publisher.initials.fl_str_mv UFSM
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Recursos Florestais e Engenharia Florestal
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Rurais
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