Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização

Detalhes bibliográficos
Autor(a) principal: Lopes, Leandro Cajuela
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações do UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/23012
Resumo: This work presents the synthesis and molecular and supramolecular study of an unprecedented series of trisubstituted bis-ureas. In all, six molecules were synthesized, in which the substituents were varied and the methylene spacer between the urea groups. The formation of appropriate crystalline and single crystal phases for the six molecules allowed molecular geometries to be obtained through single crystal X-Ray diffraction and crystal engineering studies to be performed. The supramolecular cluster was used to determine the molecular coordination number, the contact area and the stabilization energy, which allowed to propose crystallization mechanisms and crystallization parameters for each stage. For the stabilization energy values, quantum mechanics calculations were used at the theory level ωB97x-D/cc-pVDZ. It was observed that diisobutylamine-substituted compounds had water in the crystal lattice – that is, crystalline hydrates. Furthermore, three of the compounds had more than one bis-urea molecule in the asymmetric unit, the conformational isomorphs. One of the conformational isomorphs was analyzed by powder X-rays and 13C solid state nuclear magnetic resonance and it was possible to observe the chemically equivalent atoms with distinct environments leading to signal complexity in the solid state compared to the liquid state. Intermolecular interactions were analyzed by QTAIM and also by 1H NMR experiments of varying concentration – being possible to correlate theoretical data with experimental data. For the six compounds, four proposals for distinct crystallization mechanisms were reported. Given the complexity of phase 6a, an unprecedented treatment of the supramolecular cluster was used to make a coherent proposal for the crystallization mechanism, and experimental NMR data were essential for understanding the initial nucleus. QTAIM revealed that compounds 6a, 7a-b and 8a presented hydrogen bonds as the one that most contributed to the formation of the more energetic nucleus (NH···O=C and/or CH···O=C), while that for compound 8b the interactions that contribute most are the CH···HC, and for 7b the interactions CH···π. In compounds 7a-b, despite the CH···π interactions not being the most energetic, they were significantly complementary to the formation of the 1D nucleus still in solution. Thus, it was possible to demonstrate in this work that interactions considered to be weak and/or dispersive by the scientific literature can have a great contribution and even directionality in the formation of the more energetic nucleus in solution of bis-urea molecules – contributing to the crystalline design.
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spelling 2021-11-26T14:56:08Z2021-11-26T14:56:08Z2021-05-28http://repositorio.ufsm.br/handle/1/23012This work presents the synthesis and molecular and supramolecular study of an unprecedented series of trisubstituted bis-ureas. In all, six molecules were synthesized, in which the substituents were varied and the methylene spacer between the urea groups. The formation of appropriate crystalline and single crystal phases for the six molecules allowed molecular geometries to be obtained through single crystal X-Ray diffraction and crystal engineering studies to be performed. The supramolecular cluster was used to determine the molecular coordination number, the contact area and the stabilization energy, which allowed to propose crystallization mechanisms and crystallization parameters for each stage. For the stabilization energy values, quantum mechanics calculations were used at the theory level ωB97x-D/cc-pVDZ. It was observed that diisobutylamine-substituted compounds had water in the crystal lattice – that is, crystalline hydrates. Furthermore, three of the compounds had more than one bis-urea molecule in the asymmetric unit, the conformational isomorphs. One of the conformational isomorphs was analyzed by powder X-rays and 13C solid state nuclear magnetic resonance and it was possible to observe the chemically equivalent atoms with distinct environments leading to signal complexity in the solid state compared to the liquid state. Intermolecular interactions were analyzed by QTAIM and also by 1H NMR experiments of varying concentration – being possible to correlate theoretical data with experimental data. For the six compounds, four proposals for distinct crystallization mechanisms were reported. Given the complexity of phase 6a, an unprecedented treatment of the supramolecular cluster was used to make a coherent proposal for the crystallization mechanism, and experimental NMR data were essential for understanding the initial nucleus. QTAIM revealed that compounds 6a, 7a-b and 8a presented hydrogen bonds as the one that most contributed to the formation of the more energetic nucleus (NH···O=C and/or CH···O=C), while that for compound 8b the interactions that contribute most are the CH···HC, and for 7b the interactions CH···π. In compounds 7a-b, despite the CH···π interactions not being the most energetic, they were significantly complementary to the formation of the 1D nucleus still in solution. Thus, it was possible to demonstrate in this work that interactions considered to be weak and/or dispersive by the scientific literature can have a great contribution and even directionality in the formation of the more energetic nucleus in solution of bis-urea molecules – contributing to the crystalline design.Este trabalho apresenta a síntese e estudo molecular e supramolecular de uma série inédita de bis-ureias trissubstituídas. Ao todo, seis moléculas foram sintetizadas, na qual se variou os substituintes e o espaçador metilênico entre os grupamentos ureia. A formação de fases cristalinas e monocristais apropriados para as seis moléculas permitiu que geometrias moleculares fossem obtidas através de difração de Raios X em monocristal e que estudos de engenharia de cristais fossem performados. O cluster supramolecular foi utilizado para determinar o número de coordenação molecular, a área de contato e a energia de estabilização, o que permitiu propor mecanismos de cristalização e parâmetros de cristalização para cada estágio. Para os valores de energia de estabilização, cálculos da mecânica quântica foram utilizados em nível de teoria ωB97x-D/cc-pVDZ. Observou-se que os compostos com substituinte de diisobutilamina apresentaram água na rede cristalina – isto é, hidratos cristalinos. Além disso, três dos compostos apresentaram mais de uma molécula de bis-ureia na unidade assimétrica, os isomorfos conformacionais. Um dos isomorfos conformacionais foi analisado por Raios X em pó e ressonância magnética nuclear em estado sólido de 13C e foi possível observar os átomos quimicamente equivalentes com ambientes distintos levam à complexidade do sinal no estado sólido em comparação com o estado líquido. As interações intermoleculares foram analisadas por QTAIM e também por experimentos de RMN de 1H de concentração variável – sendo possível correlacionar dados teóricos aos dados experimentais. Para os seis compostos, quatro propostas de mecanismos de cristalização distintos foram relatadas. Dada a complexidade da fase 6a, uma tratativa inédita do cluster supramolecular foi utilizada para que se pudesse fazer uma proposta coerente de mecanismo de cristalização, sendo que dados experimentais de RMN foram fundamentais para o entendimento do núcleo inicial. A QTAIM revelou que os compostos 6a, 7a-b e 8a apresentaram ligações de hidrogênio como sendo a que mais contribui para a formação do núcleo mais energético (NH···O=C e/ou CH···O=C), enquanto que para o composto 8b a interação que mais contribui são as CH···HC, e para o 7b são as interações CH···π. Nos compostos 7a-b, apesar de as interações CH···π não serem as mais energéticas, estas se mostraram significativamente complementares para a formação do núcleo 1D ainda em solução. Com isso, foi possível demonstrar nesse trabalho que interações consideradas como sendo fracas e/ou dispersivas pela literatura científica podem ter uma grande contribuição e até mesmo direcionalidade na formação do núcleo mais energético em solução de moléculas bis-ureias – contribuindo para o design cristalino.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESConselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqFundação de Amparo à Pesquisa do Estado do Rio Grande do Sul - FAPERGSporUniversidade Federal de Santa MariaCentro de Ciências Naturais e ExatasPrograma de Pós-Graduação em QuímicaUFSMBrasilQuímicaAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessQuímica supramolecularEngenharia de cristaisBis-ureiasCluster supramolecularMecanismos de cristalizaçãoSupramolecular chemistryCrystal engineeringSupramolecular clusterCrystallization mechanismsCNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICASíntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalizaçãoSynthesis and supramolecular study of trisubstituted bis-ureas: crystalization mechanismsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisMartins, Marcos Antonio Pintohttp://lattes.cnpq.br/6457412713967642Hörner, ManfredoFiss, Gabriela Fehnhttp://lattes.cnpq.br/1593291327544618Lopes, Leandro Cajuela100600000000600600600600600c28419d9-6027-4f9c-acd2-76e8067a85d15425e6e4-0d8a-4895-b080-2a906c6960c934252cc3-b6c0-4876-9bb6-6020475d2214dea8c68c-cf04-46ff-bbf0-a9d1fe9003b8reponame:Biblioteca Digital de Teses e Dissertações do UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSMORIGINALDIS_PPGQUIMICA_2021_LOPES_LEANDRO.pdfDIS_PPGQUIMICA_2021_LOPES_LEANDRO.pdfDissertaçãoapplication/pdf10206474http://repositorio.ufsm.br/bitstream/1/23012/1/DIS_PPGQUIMICA_2021_LOPES_LEANDRO.pdf7ba7994beeb628e09bfb07fccde890b0MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; 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dc.title.por.fl_str_mv Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
dc.title.alternative.eng.fl_str_mv Synthesis and supramolecular study of trisubstituted bis-ureas: crystalization mechanisms
title Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
spellingShingle Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
Lopes, Leandro Cajuela
Química supramolecular
Engenharia de cristais
Bis-ureias
Cluster supramolecular
Mecanismos de cristalização
Supramolecular chemistry
Crystal engineering
Supramolecular cluster
Crystallization mechanisms
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
title_full Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
title_fullStr Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
title_full_unstemmed Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
title_sort Síntese e estudo supramolecular de bis-ureias trissubstituídas: mecanismos de cristalização
author Lopes, Leandro Cajuela
author_facet Lopes, Leandro Cajuela
author_role author
dc.contributor.advisor1.fl_str_mv Martins, Marcos Antonio Pinto
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/6457412713967642
dc.contributor.referee1.fl_str_mv Hörner, Manfredo
dc.contributor.referee2.fl_str_mv Fiss, Gabriela Fehn
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1593291327544618
dc.contributor.author.fl_str_mv Lopes, Leandro Cajuela
contributor_str_mv Martins, Marcos Antonio Pinto
Hörner, Manfredo
Fiss, Gabriela Fehn
dc.subject.por.fl_str_mv Química supramolecular
Engenharia de cristais
Bis-ureias
Cluster supramolecular
Mecanismos de cristalização
topic Química supramolecular
Engenharia de cristais
Bis-ureias
Cluster supramolecular
Mecanismos de cristalização
Supramolecular chemistry
Crystal engineering
Supramolecular cluster
Crystallization mechanisms
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.eng.fl_str_mv Supramolecular chemistry
Crystal engineering
Supramolecular cluster
Crystallization mechanisms
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
description This work presents the synthesis and molecular and supramolecular study of an unprecedented series of trisubstituted bis-ureas. In all, six molecules were synthesized, in which the substituents were varied and the methylene spacer between the urea groups. The formation of appropriate crystalline and single crystal phases for the six molecules allowed molecular geometries to be obtained through single crystal X-Ray diffraction and crystal engineering studies to be performed. The supramolecular cluster was used to determine the molecular coordination number, the contact area and the stabilization energy, which allowed to propose crystallization mechanisms and crystallization parameters for each stage. For the stabilization energy values, quantum mechanics calculations were used at the theory level ωB97x-D/cc-pVDZ. It was observed that diisobutylamine-substituted compounds had water in the crystal lattice – that is, crystalline hydrates. Furthermore, three of the compounds had more than one bis-urea molecule in the asymmetric unit, the conformational isomorphs. One of the conformational isomorphs was analyzed by powder X-rays and 13C solid state nuclear magnetic resonance and it was possible to observe the chemically equivalent atoms with distinct environments leading to signal complexity in the solid state compared to the liquid state. Intermolecular interactions were analyzed by QTAIM and also by 1H NMR experiments of varying concentration – being possible to correlate theoretical data with experimental data. For the six compounds, four proposals for distinct crystallization mechanisms were reported. Given the complexity of phase 6a, an unprecedented treatment of the supramolecular cluster was used to make a coherent proposal for the crystallization mechanism, and experimental NMR data were essential for understanding the initial nucleus. QTAIM revealed that compounds 6a, 7a-b and 8a presented hydrogen bonds as the one that most contributed to the formation of the more energetic nucleus (NH···O=C and/or CH···O=C), while that for compound 8b the interactions that contribute most are the CH···HC, and for 7b the interactions CH···π. In compounds 7a-b, despite the CH···π interactions not being the most energetic, they were significantly complementary to the formation of the 1D nucleus still in solution. Thus, it was possible to demonstrate in this work that interactions considered to be weak and/or dispersive by the scientific literature can have a great contribution and even directionality in the formation of the more energetic nucleus in solution of bis-urea molecules – contributing to the crystalline design.
publishDate 2021
dc.date.accessioned.fl_str_mv 2021-11-26T14:56:08Z
dc.date.available.fl_str_mv 2021-11-26T14:56:08Z
dc.date.issued.fl_str_mv 2021-05-28
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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url http://repositorio.ufsm.br/handle/1/23012
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dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
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rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Naturais e Exatas
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Química
dc.publisher.initials.fl_str_mv UFSM
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Química
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Naturais e Exatas
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