Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp

Detalhes bibliográficos
Autor(a) principal: Batista, Taylice Leonel
Data de Publicação: 2022
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/27581
Resumo: Selenium (Se) plays a biological role for many organisms that may include reproduction, immune defense, and disease resistance. A selenoprotein has an amino acid residue containing the element selenium (Se), called selenocysteine (Sec) or 21st amino acid. Selenoproteins are a broad group of proteins identified as misidentified and poorly annotated in databases. These genes are complex due to the ambiguity of the identification codon "UGA", considered a stop codon and selenocysteine signal. SECIS elements are RNA structures essential for selenocysteine incorporation, being used as gene indicators of selenoproteins in bioinformatics. The objective of this research was to evaluate the pre-verbal candidate genes of selenoproteins from Aedes aegypti and Aedes albopictus, in silico, evaluating their modulation during infection by the arboviruses Dengue virus 1 (DENV1) and 2 (DENV2). Search for possible selenoprotein genes in Ae.aegypti and Ae.albopictus, in the NCBI database “National Center for Biotechnology Information” and analysis of the sequences in the Seblastian platform, predictor of SECIS, resulted in the identification in Ae. aegypti from 11 candidate genes for selenoproteins in the mRNA set and 2 in ncRNAs and in Ae. albopictus of 3 possible genes among the set of mRNAs and 3 in ncRNAs. In addition, genes for selenoproteins and genes associated with their biosynthesis machinery were evaluated for their expression at the transcriptional level in two species-derived mosquito strains. All the putative selenoprotein genes already described, as well as the genes associated with the synthesis machinery, were transcribed at different levels. During DENV1 invasion of Ae.aegypti Aag2 cells, there was a transcriptional increase in the Gawky gene, a candidate gene for selenoprotein, and a transcriptional increase in the Sergef gene, a gene for the selenoprotein synthesis machinery. DENV1 infection in Ae. albopictus did not consider the transcriptional modulation of genes. Aag2 cells, during DENV2 infection, significantly decreased transcription of the SelenoK gene commonly found in arthropods, Eif1ax, Kcnt2 and Tigd6, candidate genes, Pstk, Sars1 and Sbp2 genes, machinery genes, and increased transcription of SelenoH, also found in most arthropods. In C6/36 cells there was a transcriptional decrease of SelenoH induced by DENV2 infection and a transcriptional increase of Sars1 and decrease in the transcription of Secp43, another gene in the machinery. Wolbachia co-infection induced a transcriptional increase of SelenoK in Aag2 cells and decreased transcription of the putative selenoproteins Gawky, Girdin, Ikzf1, Kcnt2, Rip3 and Tigd6 and of the machinery genes Efsec, Sbp2 and Sepsecs. In C6/36 cells, Wolbachia co-infection increased SelenoH transcription and increased transcription of Xpr1, a gene predicted in Ae.albopictus, and Efsec. These data corroborate the importance of Se in the nutrition of mosquitoes and may have an implication in the modulation of the immune system during persistent infection by arboviruses of human interest. In fact, the results of the present work reinforce the need for further studies to refine the selenoprotein search tools.
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spelling Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes sppIdentification and in silico analysis of transcriptional modulation of selenoprotein genes in Aedes sppAedes aegyptiAedes albopictusSelênioSelenoproteínaSECISSelenocisteínaSeleniumSelenoproteinSelenocysteineCNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICASelenium (Se) plays a biological role for many organisms that may include reproduction, immune defense, and disease resistance. A selenoprotein has an amino acid residue containing the element selenium (Se), called selenocysteine (Sec) or 21st amino acid. Selenoproteins are a broad group of proteins identified as misidentified and poorly annotated in databases. These genes are complex due to the ambiguity of the identification codon "UGA", considered a stop codon and selenocysteine signal. SECIS elements are RNA structures essential for selenocysteine incorporation, being used as gene indicators of selenoproteins in bioinformatics. The objective of this research was to evaluate the pre-verbal candidate genes of selenoproteins from Aedes aegypti and Aedes albopictus, in silico, evaluating their modulation during infection by the arboviruses Dengue virus 1 (DENV1) and 2 (DENV2). Search for possible selenoprotein genes in Ae.aegypti and Ae.albopictus, in the NCBI database “National Center for Biotechnology Information” and analysis of the sequences in the Seblastian platform, predictor of SECIS, resulted in the identification in Ae. aegypti from 11 candidate genes for selenoproteins in the mRNA set and 2 in ncRNAs and in Ae. albopictus of 3 possible genes among the set of mRNAs and 3 in ncRNAs. In addition, genes for selenoproteins and genes associated with their biosynthesis machinery were evaluated for their expression at the transcriptional level in two species-derived mosquito strains. All the putative selenoprotein genes already described, as well as the genes associated with the synthesis machinery, were transcribed at different levels. During DENV1 invasion of Ae.aegypti Aag2 cells, there was a transcriptional increase in the Gawky gene, a candidate gene for selenoprotein, and a transcriptional increase in the Sergef gene, a gene for the selenoprotein synthesis machinery. DENV1 infection in Ae. albopictus did not consider the transcriptional modulation of genes. Aag2 cells, during DENV2 infection, significantly decreased transcription of the SelenoK gene commonly found in arthropods, Eif1ax, Kcnt2 and Tigd6, candidate genes, Pstk, Sars1 and Sbp2 genes, machinery genes, and increased transcription of SelenoH, also found in most arthropods. In C6/36 cells there was a transcriptional decrease of SelenoH induced by DENV2 infection and a transcriptional increase of Sars1 and decrease in the transcription of Secp43, another gene in the machinery. Wolbachia co-infection induced a transcriptional increase of SelenoK in Aag2 cells and decreased transcription of the putative selenoproteins Gawky, Girdin, Ikzf1, Kcnt2, Rip3 and Tigd6 and of the machinery genes Efsec, Sbp2 and Sepsecs. In C6/36 cells, Wolbachia co-infection increased SelenoH transcription and increased transcription of Xpr1, a gene predicted in Ae.albopictus, and Efsec. These data corroborate the importance of Se in the nutrition of mosquitoes and may have an implication in the modulation of the immune system during persistent infection by arboviruses of human interest. In fact, the results of the present work reinforce the need for further studies to refine the selenoprotein search tools.O selênio (Se) exerce um papel biológico para muitos organismos que podem incluir reprodução, defesa imunológica e resistência a doenças. Uma selenoproteína apresenta um resíduo de aminoácido contendo o elemento selênio (Se), chamado selenocisteína (Sec) o 21º aminoácido. As selenoproteínas são um grupo amplo de proteínas normalmente mal identificadas e mal anotadas em bancos de dados de sequências. A identificação desses genes é complexa devido à ambiguidade do códon "UGA", considerado um códon de terminação e sinalizador de selenocisteína. Elementos SECIS são estruturas de RNA essenciais para a incorporação de selenocisteína, sendo usados como marcadores gênicos de selenoproteínas em diversos estudos de bioinformática. O objetivo desta pesquisa foi prever genes candidatos de selenoproteínas de Aedes aegypti e Aedes.albopictus, in silico, avaliando sua modulação durante a infecção pelos arbovírus Dengue vírus 1 (DENV1) e 2 (DENV2). A busca por possíveis genes de selenoproteínas em Ae.aegypti e Ae.albopictus, no banco de dados NCBI “National Center for Biotechnology Information” e análise das sequências na plataforma Seblastian, preditor de SECIS, resultou na identificação em Ae. aegypti de 11 genes candidatos para selenoproteínas no conjunto de mRNAs e 2 em ncRNAs e em Ae. albopictus de 3 genes possíveis entre o conjunto de mRNAs e 3 em ncRNAs. Além disso, os genes para selenoproteínas e genes associados à sua maquinaria de biossíntese foram avaliados quanto a sua expressão em nível transcricional em duas linhagens de mosquito derivadas das duas espécies. Todos os genes de selenoproteínas putativos já descritos, bem como os genes associados a maquinaria de síntese foram transcritos em diferentes níveis. Durante a infecção por DENV1 em células Aag2 de Ae.aegypti, houve diminuição transcricional do gene Gawky, gene candidato para selenoproteína, e um aumento transcricional do gene Sergef, gene da maquinaria de síntese das selenoproteínas. A infecção por DENV1 em células C6/36 de Ae. albopictus não causou modulação transcricional nos genes avaliados. Células Aag2, durante a infecção por DENV2, diminuiu significativamente a transcrição do gene de SelenoK comumente encontrado em artrópodes, o Eif1ax, o Kcnt2 e o Tigd6, genes candidatos, os genes Pstk, Sars1 e Sbp2, genes da maquinaria, e aumentou a transcrição de SelenoH, também encontrado na maioria dos artrópodes. Em células C6/36 houve uma diminuição transcricional de SelenoH induzida pela infecção por DENV2 e um aumento transcricional de Sars1 e diminuição na transcrição de Secp43, outro gene da maquinaria. A co-infecção de Wolbachia induziu um aumento transcricional de SelenoK, em células Aag2, e diminuiu a transcrição das selenoproteínas putativas Gawky, Girdin, Ikzf1, Kcnt2, Rip3 e Tigd6 e dos genes Efsec, Sbp2 e Sepsecs da maquinaria. Nas células C6/36 a co-infecção por Wolbachia aumentou a transcrição de SelenoH e aumentou a transcrição de Xpr1, um gene predito em Ae.albopictus, e do Efsec. Esses dados corroboram a importância do Se na nutrição dos mosquitos, e pode ter implicação na modulação do sistema imune durante infecção persistente por arbovírus de interesse humano. De fato, os resultados do presente trabalho reforçam a necessidade de maiores estudos para refinar as ferramentas de busca de selenoproteínas.Universidade Federal de Santa MariaBrasilBioquímicaUFSMPrograma de Pós-Graduação em Ciências Biológicas: Bioquímica ToxicológicaCentro de Ciências Naturais e ExatasAraújo, Daniel Mendes Pereira Ardisson dehttp://lattes.cnpq.br/5900778605189135Piccoli, Bruna CandiaRibeiro, Bergmann MoraisSantos, Flavia Barreto dosBatista, Taylice Leonel2023-01-12T19:14:25Z2023-01-12T19:14:25Z2022-08-27info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://repositorio.ufsm.br/handle/1/27581porAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2023-01-12T19:14:25Zoai:repositorio.ufsm.br:1/27581Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2023-01-12T19:14:25Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
Identification and in silico analysis of transcriptional modulation of selenoprotein genes in Aedes spp
title Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
spellingShingle Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
Batista, Taylice Leonel
Aedes aegypti
Aedes albopictus
Selênio
Selenoproteína
SECIS
Selenocisteína
Selenium
Selenoprotein
Selenocysteine
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
title_short Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
title_full Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
title_fullStr Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
title_full_unstemmed Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
title_sort Identificação e análise in silico da modulação transcricional de genes de selenoproteínas em Aedes spp
author Batista, Taylice Leonel
author_facet Batista, Taylice Leonel
author_role author
dc.contributor.none.fl_str_mv Araújo, Daniel Mendes Pereira Ardisson de
http://lattes.cnpq.br/5900778605189135
Piccoli, Bruna Candia
Ribeiro, Bergmann Morais
Santos, Flavia Barreto dos
dc.contributor.author.fl_str_mv Batista, Taylice Leonel
dc.subject.por.fl_str_mv Aedes aegypti
Aedes albopictus
Selênio
Selenoproteína
SECIS
Selenocisteína
Selenium
Selenoprotein
Selenocysteine
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
topic Aedes aegypti
Aedes albopictus
Selênio
Selenoproteína
SECIS
Selenocisteína
Selenium
Selenoprotein
Selenocysteine
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
description Selenium (Se) plays a biological role for many organisms that may include reproduction, immune defense, and disease resistance. A selenoprotein has an amino acid residue containing the element selenium (Se), called selenocysteine (Sec) or 21st amino acid. Selenoproteins are a broad group of proteins identified as misidentified and poorly annotated in databases. These genes are complex due to the ambiguity of the identification codon "UGA", considered a stop codon and selenocysteine signal. SECIS elements are RNA structures essential for selenocysteine incorporation, being used as gene indicators of selenoproteins in bioinformatics. The objective of this research was to evaluate the pre-verbal candidate genes of selenoproteins from Aedes aegypti and Aedes albopictus, in silico, evaluating their modulation during infection by the arboviruses Dengue virus 1 (DENV1) and 2 (DENV2). Search for possible selenoprotein genes in Ae.aegypti and Ae.albopictus, in the NCBI database “National Center for Biotechnology Information” and analysis of the sequences in the Seblastian platform, predictor of SECIS, resulted in the identification in Ae. aegypti from 11 candidate genes for selenoproteins in the mRNA set and 2 in ncRNAs and in Ae. albopictus of 3 possible genes among the set of mRNAs and 3 in ncRNAs. In addition, genes for selenoproteins and genes associated with their biosynthesis machinery were evaluated for their expression at the transcriptional level in two species-derived mosquito strains. All the putative selenoprotein genes already described, as well as the genes associated with the synthesis machinery, were transcribed at different levels. During DENV1 invasion of Ae.aegypti Aag2 cells, there was a transcriptional increase in the Gawky gene, a candidate gene for selenoprotein, and a transcriptional increase in the Sergef gene, a gene for the selenoprotein synthesis machinery. DENV1 infection in Ae. albopictus did not consider the transcriptional modulation of genes. Aag2 cells, during DENV2 infection, significantly decreased transcription of the SelenoK gene commonly found in arthropods, Eif1ax, Kcnt2 and Tigd6, candidate genes, Pstk, Sars1 and Sbp2 genes, machinery genes, and increased transcription of SelenoH, also found in most arthropods. In C6/36 cells there was a transcriptional decrease of SelenoH induced by DENV2 infection and a transcriptional increase of Sars1 and decrease in the transcription of Secp43, another gene in the machinery. Wolbachia co-infection induced a transcriptional increase of SelenoK in Aag2 cells and decreased transcription of the putative selenoproteins Gawky, Girdin, Ikzf1, Kcnt2, Rip3 and Tigd6 and of the machinery genes Efsec, Sbp2 and Sepsecs. In C6/36 cells, Wolbachia co-infection increased SelenoH transcription and increased transcription of Xpr1, a gene predicted in Ae.albopictus, and Efsec. These data corroborate the importance of Se in the nutrition of mosquitoes and may have an implication in the modulation of the immune system during persistent infection by arboviruses of human interest. In fact, the results of the present work reinforce the need for further studies to refine the selenoprotein search tools.
publishDate 2022
dc.date.none.fl_str_mv 2022-08-27
2023-01-12T19:14:25Z
2023-01-12T19:14:25Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/27581
url http://repositorio.ufsm.br/handle/1/27581
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Ciências Biológicas: Bioquímica Toxicológica
Centro de Ciências Naturais e Exatas
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Ciências Biológicas: Bioquímica Toxicológica
Centro de Ciências Naturais e Exatas
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
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reponame_str Manancial - Repositório Digital da UFSM
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repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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