Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
Autor(a) principal: | |
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Data de Publicação: | 2009 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
dARK ID: | ark:/48912/00130000151n3 |
DOI: | 10.4238/vol8-2gmr591 |
Texto Completo: | http://dx.doi.org/10.4238/vol8-2gmr591 http://repositorio.unifesp.br/handle/11600/43724 |
Resumo: | Chagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease. |
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Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyleticTrypanosoma cruziChagas diseaseMolecular evolutionPhylogenySmall subunit rDNAChagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease.Univ Fed Sao Paulo, Dept Microbiol Imunol & Parasitol, Sao Paulo, BrazilUniv Sao Paulo, Inst Quim, Dept Bioquim, BR-01498 Sao Paulo, BrazilUniv Fed Sao Paulo, Dept Microbiol Imunol & Parasitol, Sao Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)International Research Scholars Program of the Howard Hughes Medical Institute (HHMI).Funpec-editoraUniversidade Federal de São Paulo (UNIFESP)Universidade de São Paulo (USP)Tomazi, Laize [UNIFESP]Kawashita, Silvia Yukie [UNIFESP]Pereira, P. M. [UNIFESP]Zingales, BiancaBriones, Marcelo Ribeiro da Silva [UNIFESP]2018-06-15T17:30:21Z2018-06-15T17:30:21Z2009-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion458-476application/pdfhttp://dx.doi.org/10.4238/vol8-2gmr591Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009.10.4238/vol8-2gmr591WOS000267938300011.pdf1676-5680http://repositorio.unifesp.br/handle/11600/43724WOS:000267938300011ark:/48912/00130000151n3engGenetics And Molecular Researchinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-01T23:42:29Zoai:repositorio.unifesp.br/:11600/43724Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T20:56:40.760407Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
title |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
spellingShingle |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic Tomazi, Laize [UNIFESP] Trypanosoma cruzi Chagas disease Molecular evolution Phylogeny Small subunit rDNA Tomazi, Laize [UNIFESP] Trypanosoma cruzi Chagas disease Molecular evolution Phylogeny Small subunit rDNA |
title_short |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
title_full |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
title_fullStr |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
title_full_unstemmed |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
title_sort |
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic |
author |
Tomazi, Laize [UNIFESP] |
author_facet |
Tomazi, Laize [UNIFESP] Tomazi, Laize [UNIFESP] Kawashita, Silvia Yukie [UNIFESP] Pereira, P. M. [UNIFESP] Zingales, Bianca Briones, Marcelo Ribeiro da Silva [UNIFESP] Kawashita, Silvia Yukie [UNIFESP] Pereira, P. M. [UNIFESP] Zingales, Bianca Briones, Marcelo Ribeiro da Silva [UNIFESP] |
author_role |
author |
author2 |
Kawashita, Silvia Yukie [UNIFESP] Pereira, P. M. [UNIFESP] Zingales, Bianca Briones, Marcelo Ribeiro da Silva [UNIFESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de São Paulo (UNIFESP) Universidade de São Paulo (USP) |
dc.contributor.author.fl_str_mv |
Tomazi, Laize [UNIFESP] Kawashita, Silvia Yukie [UNIFESP] Pereira, P. M. [UNIFESP] Zingales, Bianca Briones, Marcelo Ribeiro da Silva [UNIFESP] |
dc.subject.por.fl_str_mv |
Trypanosoma cruzi Chagas disease Molecular evolution Phylogeny Small subunit rDNA |
topic |
Trypanosoma cruzi Chagas disease Molecular evolution Phylogeny Small subunit rDNA |
description |
Chagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease. |
publishDate |
2009 |
dc.date.none.fl_str_mv |
2009-01-01 2018-06-15T17:30:21Z 2018-06-15T17:30:21Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.4238/vol8-2gmr591 Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009. 10.4238/vol8-2gmr591 WOS000267938300011.pdf 1676-5680 http://repositorio.unifesp.br/handle/11600/43724 WOS:000267938300011 |
dc.identifier.dark.fl_str_mv |
ark:/48912/00130000151n3 |
url |
http://dx.doi.org/10.4238/vol8-2gmr591 http://repositorio.unifesp.br/handle/11600/43724 |
identifier_str_mv |
Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009. 10.4238/vol8-2gmr591 WOS000267938300011.pdf 1676-5680 WOS:000267938300011 ark:/48912/00130000151n3 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Genetics And Molecular Research |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
458-476 application/pdf |
dc.publisher.none.fl_str_mv |
Funpec-editora |
publisher.none.fl_str_mv |
Funpec-editora |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
_version_ |
1822183987688243200 |
dc.identifier.doi.none.fl_str_mv |
10.4238/vol8-2gmr591 |