Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic

Detalhes bibliográficos
Autor(a) principal: Tomazi, Laize [UNIFESP]
Data de Publicação: 2009
Outros Autores: Kawashita, Silvia Yukie [UNIFESP], Pereira, P. M. [UNIFESP], Zingales, Bianca, Briones, Marcelo Ribeiro da Silva [UNIFESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
dARK ID: ark:/48912/00130000151n3
DOI: 10.4238/vol8-2gmr591
Texto Completo: http://dx.doi.org/10.4238/vol8-2gmr591
http://repositorio.unifesp.br/handle/11600/43724
Resumo: Chagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease.
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spelling Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyleticTrypanosoma cruziChagas diseaseMolecular evolutionPhylogenySmall subunit rDNAChagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease.Univ Fed Sao Paulo, Dept Microbiol Imunol & Parasitol, Sao Paulo, BrazilUniv Sao Paulo, Inst Quim, Dept Bioquim, BR-01498 Sao Paulo, BrazilUniv Fed Sao Paulo, Dept Microbiol Imunol & Parasitol, Sao Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)International Research Scholars Program of the Howard Hughes Medical Institute (HHMI).Funpec-editoraUniversidade Federal de São Paulo (UNIFESP)Universidade de São Paulo (USP)Tomazi, Laize [UNIFESP]Kawashita, Silvia Yukie [UNIFESP]Pereira, P. M. [UNIFESP]Zingales, BiancaBriones, Marcelo Ribeiro da Silva [UNIFESP]2018-06-15T17:30:21Z2018-06-15T17:30:21Z2009-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion458-476application/pdfhttp://dx.doi.org/10.4238/vol8-2gmr591Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009.10.4238/vol8-2gmr591WOS000267938300011.pdf1676-5680http://repositorio.unifesp.br/handle/11600/43724WOS:000267938300011ark:/48912/00130000151n3engGenetics And Molecular Researchinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-01T23:42:29Zoai:repositorio.unifesp.br/:11600/43724Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T20:56:40.760407Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
title Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
spellingShingle Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
Tomazi, Laize [UNIFESP]
Trypanosoma cruzi
Chagas disease
Molecular evolution
Phylogeny
Small subunit rDNA
Tomazi, Laize [UNIFESP]
Trypanosoma cruzi
Chagas disease
Molecular evolution
Phylogeny
Small subunit rDNA
title_short Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
title_full Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
title_fullStr Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
title_full_unstemmed Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
title_sort Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
author Tomazi, Laize [UNIFESP]
author_facet Tomazi, Laize [UNIFESP]
Tomazi, Laize [UNIFESP]
Kawashita, Silvia Yukie [UNIFESP]
Pereira, P. M. [UNIFESP]
Zingales, Bianca
Briones, Marcelo Ribeiro da Silva [UNIFESP]
Kawashita, Silvia Yukie [UNIFESP]
Pereira, P. M. [UNIFESP]
Zingales, Bianca
Briones, Marcelo Ribeiro da Silva [UNIFESP]
author_role author
author2 Kawashita, Silvia Yukie [UNIFESP]
Pereira, P. M. [UNIFESP]
Zingales, Bianca
Briones, Marcelo Ribeiro da Silva [UNIFESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
Universidade de São Paulo (USP)
dc.contributor.author.fl_str_mv Tomazi, Laize [UNIFESP]
Kawashita, Silvia Yukie [UNIFESP]
Pereira, P. M. [UNIFESP]
Zingales, Bianca
Briones, Marcelo Ribeiro da Silva [UNIFESP]
dc.subject.por.fl_str_mv Trypanosoma cruzi
Chagas disease
Molecular evolution
Phylogeny
Small subunit rDNA
topic Trypanosoma cruzi
Chagas disease
Molecular evolution
Phylogeny
Small subunit rDNA
description Chagas disease is still a major public health problem in Latin America. Its causative agent, Trypanosoma cruzi, can be typed into three major groups, T. cruzi I, T. cruzi II and hybrids. These groups each have specific genetic characteristics and epidemiological distributions. Several highly virulent strains are found in the hybrid group; their origin is still a matter of debate. The null hypothesis is that the hybrids are of polyphyletic origin, evolving independently from various hybridization events. The alternative hypothesis is that all extant hybrid strains originated from a single hybridization event. We sequenced both alleles of genes encoding EF-1 alpha, actin and SSU rDNA of 26 T. cruzi strains and DHFR-TS and TR of 12 strains. This information was used for network genealogy analysis and Bayesian phylogenies. We found T. cruzi I and T. cruzi II to be monophyletic and that all hybrids had different combinations of T. cruzi I and T. cruzi II haplotypes plus hybrid-specific haplotypes. Bootstrap values (networks) and posterior probabilities (Bayesian phylogenies) of clades supporting the monophyly of hybrids were far below the 95% confidence interval, indicating that the hybrid group is polyphyletic. We hypothesize that T. cruzi I and T. cruzi II are two different species and that the hybrids are extant representatives of independent events of genome hybridization, which sporadically have sufficient fitness to impact on the epidemiology of Chagas disease.
publishDate 2009
dc.date.none.fl_str_mv 2009-01-01
2018-06-15T17:30:21Z
2018-06-15T17:30:21Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.4238/vol8-2gmr591
Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009.
10.4238/vol8-2gmr591
WOS000267938300011.pdf
1676-5680
http://repositorio.unifesp.br/handle/11600/43724
WOS:000267938300011
dc.identifier.dark.fl_str_mv ark:/48912/00130000151n3
url http://dx.doi.org/10.4238/vol8-2gmr591
http://repositorio.unifesp.br/handle/11600/43724
identifier_str_mv Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 8, n. 2, p. 458-476, 2009.
10.4238/vol8-2gmr591
WOS000267938300011.pdf
1676-5680
WOS:000267938300011
ark:/48912/00130000151n3
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics And Molecular Research
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 458-476
application/pdf
dc.publisher.none.fl_str_mv Funpec-editora
publisher.none.fl_str_mv Funpec-editora
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
_version_ 1822183987688243200
dc.identifier.doi.none.fl_str_mv 10.4238/vol8-2gmr591