Analysis of the Yeast Peptidome and Comparison with the Human Peptidome

Detalhes bibliográficos
Autor(a) principal: Dasgupta, Sayani
Data de Publicação: 2016
Outros Autores: Yang, Ciyu, Castro, Leandro M., Tashima, Alexandre Keiji [UNIFESP], Ferro, Emer S., Moir, Robyn D., Willis, Ian M., Fricker, Lloyd D.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0163312
https://repositorio.unifesp.br/handle/11600/57098
Resumo: Peptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the protein
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spelling Analysis of the Yeast Peptidome and Comparison with the Human PeptidomePeptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the proteinthe human peptidome is also highly represented in N- or C-terminal protein fragments. Most yeast and humans peptides are derived from a subset of abundant proteins, many with functions involving cellular metabolism or protein synthesis and folding. Of the 75 yeast proteins that give rise to peptides, 24 have orthologs that give rise to human and/or mouse peptides and for some, the same region of the proteins are found in the human, mouse, and yeast peptidomes. Taken together, these results support the hypothesis that intracellular peptides may have specific and conserved biological functions.Albert Einstein Coll Med, Dept Mol Pharmacol, Bronx, NY 10461 USAMem Sloan Kettering Canc Ctr, Dept Pathol, New York, NY 10065 USASao Paulo State Univ, Inst Biomed Sci, Campus Sao Paulo Coast, BR-11330900 Sao Vicente, SP, BrazilUniv Fed Sao Paulo, Escola Paulista Med, Dept Biochem, BR-04023901 Sao Paulo, SP, BrazilUniv Sao Paulo, Inst Biomed Sci, Dept Pharmacol, BR-05508000 Sao Paulo, SP, BrazilAlbert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USAAlbert Einstein Coll Med, Dept Syst & Computat Biol, Bronx, NY 10461 USAAlbert Einstein Coll Med, Dept Neurosci, Bronx, NY 10461 USADepartment of Biochemistry, Escola Paulista de Medicina, Universidade Federal de São Paulo (UNIFESP), Sao Paulo, SP, 04023–901, SP, BrazilWeb of ScienceUnited States National Institutes of Health [R01-DA004494]Brazilian National Research Council [400944/2014-6, 445363/2014-2, 303135/2011-5, 449390/2014-4]Financiadora de Estudos e ProjetosFundacao de Amparo a Pesquisa do Estado de Sao Paulo [2012/19321-9]NIH: R01-DA004494CNPq: 400944/2014-6CNPq: 445363/2014-2CNPq: 303135/2011-5CNPq: 449390/2014-4FAPESP: 2012/19321-9Public Library Science2020-07-31T12:47:48Z2020-07-31T12:47:48Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1371/journal.pone.0163312Plos One. San Francisco, v. 11, n. 9, p. -, 2016.10.1371/journal.pone.0163312WOS000384328500042.pdf1932-6203https://repositorio.unifesp.br/handle/11600/57098WOS:000384328500042engPlos OneSan Franciscoinfo:eu-repo/semantics/openAccessDasgupta, SayaniYang, CiyuCastro, Leandro M.Tashima, Alexandre Keiji [UNIFESP]Ferro, Emer S.Moir, Robyn D.Willis, Ian M.Fricker, Lloyd D.reponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T19:40:43Zoai:repositorio.unifesp.br/:11600/57098Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T19:40:43Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
title Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
spellingShingle Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
Dasgupta, Sayani
title_short Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
title_full Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
title_fullStr Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
title_full_unstemmed Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
title_sort Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
author Dasgupta, Sayani
author_facet Dasgupta, Sayani
Yang, Ciyu
Castro, Leandro M.
Tashima, Alexandre Keiji [UNIFESP]
Ferro, Emer S.
Moir, Robyn D.
Willis, Ian M.
Fricker, Lloyd D.
author_role author
author2 Yang, Ciyu
Castro, Leandro M.
Tashima, Alexandre Keiji [UNIFESP]
Ferro, Emer S.
Moir, Robyn D.
Willis, Ian M.
Fricker, Lloyd D.
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Dasgupta, Sayani
Yang, Ciyu
Castro, Leandro M.
Tashima, Alexandre Keiji [UNIFESP]
Ferro, Emer S.
Moir, Robyn D.
Willis, Ian M.
Fricker, Lloyd D.
description Peptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the protein
publishDate 2016
dc.date.none.fl_str_mv 2016
2020-07-31T12:47:48Z
2020-07-31T12:47:48Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0163312
Plos One. San Francisco, v. 11, n. 9, p. -, 2016.
10.1371/journal.pone.0163312
WOS000384328500042.pdf
1932-6203
https://repositorio.unifesp.br/handle/11600/57098
WOS:000384328500042
url http://dx.doi.org/10.1371/journal.pone.0163312
https://repositorio.unifesp.br/handle/11600/57098
identifier_str_mv Plos One. San Francisco, v. 11, n. 9, p. -, 2016.
10.1371/journal.pone.0163312
WOS000384328500042.pdf
1932-6203
WOS:000384328500042
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Plos One
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
application/pdf
dc.coverage.none.fl_str_mv San Francisco
dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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