Analysis of the Yeast Peptidome and Comparison with the Human Peptidome
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pone.0163312 https://repositorio.unifesp.br/handle/11600/57098 |
Resumo: | Peptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the protein |
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Analysis of the Yeast Peptidome and Comparison with the Human PeptidomePeptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the proteinthe human peptidome is also highly represented in N- or C-terminal protein fragments. Most yeast and humans peptides are derived from a subset of abundant proteins, many with functions involving cellular metabolism or protein synthesis and folding. Of the 75 yeast proteins that give rise to peptides, 24 have orthologs that give rise to human and/or mouse peptides and for some, the same region of the proteins are found in the human, mouse, and yeast peptidomes. Taken together, these results support the hypothesis that intracellular peptides may have specific and conserved biological functions.Albert Einstein Coll Med, Dept Mol Pharmacol, Bronx, NY 10461 USAMem Sloan Kettering Canc Ctr, Dept Pathol, New York, NY 10065 USASao Paulo State Univ, Inst Biomed Sci, Campus Sao Paulo Coast, BR-11330900 Sao Vicente, SP, BrazilUniv Fed Sao Paulo, Escola Paulista Med, Dept Biochem, BR-04023901 Sao Paulo, SP, BrazilUniv Sao Paulo, Inst Biomed Sci, Dept Pharmacol, BR-05508000 Sao Paulo, SP, BrazilAlbert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USAAlbert Einstein Coll Med, Dept Syst & Computat Biol, Bronx, NY 10461 USAAlbert Einstein Coll Med, Dept Neurosci, Bronx, NY 10461 USADepartment of Biochemistry, Escola Paulista de Medicina, Universidade Federal de São Paulo (UNIFESP), Sao Paulo, SP, 04023–901, SP, BrazilWeb of ScienceUnited States National Institutes of Health [R01-DA004494]Brazilian National Research Council [400944/2014-6, 445363/2014-2, 303135/2011-5, 449390/2014-4]Financiadora de Estudos e ProjetosFundacao de Amparo a Pesquisa do Estado de Sao Paulo [2012/19321-9]NIH: R01-DA004494CNPq: 400944/2014-6CNPq: 445363/2014-2CNPq: 303135/2011-5CNPq: 449390/2014-4FAPESP: 2012/19321-9Public Library Science2020-07-31T12:47:48Z2020-07-31T12:47:48Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1371/journal.pone.0163312Plos One. San Francisco, v. 11, n. 9, p. -, 2016.10.1371/journal.pone.0163312WOS000384328500042.pdf1932-6203https://repositorio.unifesp.br/handle/11600/57098WOS:000384328500042engPlos OneSan Franciscoinfo:eu-repo/semantics/openAccessDasgupta, SayaniYang, CiyuCastro, Leandro M.Tashima, Alexandre Keiji [UNIFESP]Ferro, Emer S.Moir, Robyn D.Willis, Ian M.Fricker, Lloyd D.reponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T19:40:43Zoai:repositorio.unifesp.br/:11600/57098Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T19:40:43Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
title |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
spellingShingle |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome Dasgupta, Sayani |
title_short |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
title_full |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
title_fullStr |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
title_full_unstemmed |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
title_sort |
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome |
author |
Dasgupta, Sayani |
author_facet |
Dasgupta, Sayani Yang, Ciyu Castro, Leandro M. Tashima, Alexandre Keiji [UNIFESP] Ferro, Emer S. Moir, Robyn D. Willis, Ian M. Fricker, Lloyd D. |
author_role |
author |
author2 |
Yang, Ciyu Castro, Leandro M. Tashima, Alexandre Keiji [UNIFESP] Ferro, Emer S. Moir, Robyn D. Willis, Ian M. Fricker, Lloyd D. |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Dasgupta, Sayani Yang, Ciyu Castro, Leandro M. Tashima, Alexandre Keiji [UNIFESP] Ferro, Emer S. Moir, Robyn D. Willis, Ian M. Fricker, Lloyd D. |
description |
Peptides function as signaling molecules in species as diverse as humans and yeast. Mass spectrometry-based peptidomics techniques provide a relatively unbiased method to assess the peptidome of biological samples. In the present study, we used a quantitative peptidomic technique to characterize the peptidome of the yeast Saccharomyces cerevisiae and compare it to the peptidomes of mammalian cell lines and tissues. Altogether, 297 yeast peptides derived from 75 proteins were identified. The yeast peptides are similar to those of the human peptidome in average size and amino acid composition. Inhibition of proteasome activity with either bortezomib or epoxomicin led to decreased levels of some yeast peptides, suggesting that these peptides are generated by the proteasome. Approximately 30% of the yeast peptides correspond to the N- or C-terminus of the protein |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016 2020-07-31T12:47:48Z 2020-07-31T12:47:48Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pone.0163312 Plos One. San Francisco, v. 11, n. 9, p. -, 2016. 10.1371/journal.pone.0163312 WOS000384328500042.pdf 1932-6203 https://repositorio.unifesp.br/handle/11600/57098 WOS:000384328500042 |
url |
http://dx.doi.org/10.1371/journal.pone.0163312 https://repositorio.unifesp.br/handle/11600/57098 |
identifier_str_mv |
Plos One. San Francisco, v. 11, n. 9, p. -, 2016. 10.1371/journal.pone.0163312 WOS000384328500042.pdf 1932-6203 WOS:000384328500042 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Plos One |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- application/pdf |
dc.coverage.none.fl_str_mv |
San Francisco |
dc.publisher.none.fl_str_mv |
Public Library Science |
publisher.none.fl_str_mv |
Public Library Science |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
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1814268321153941504 |