Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

Detalhes bibliográficos
Autor(a) principal: Coutinho, Felipe Hernandes
Data de Publicação: 2017
Outros Autores: Silveira, Cynthia Barbosa da, Gregoracci, Gustavo Bueno [UNIFESP], Thompson, Cristiane Carneiro, Edwards, Robert A., Brussaard, Corina P. D. (Cornelia Paula Dorothea), Dutilh, Bas E., Thompson, Fabiano Lopes
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
dARK ID: ark:/48912/001300000gnvt
DOI: 10.1038/ncomms15955
Texto Completo: https://dx.doi.org/10.1038/ncomms15955
https://repositorio.unifesp.br/handle/11600/53458
Resumo: Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes.
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spelling Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceansMarine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes.Univ Fed Rio de Janeiro, IB, BR-21944970 Rio de Janeiro, BrazilRadboud Univ Nijmegen, Radboud Inst Mol Life Sci, CMBI, Med Ctr, NL-6500 HB Nijmegen, NetherlandsUniv Utrecht, Theoret Biol & Bioinformat, NL-3584 CH Utrecht, NetherlandsSan Diego State Univ, Dept Biol, San Diego, CA 92182 USAUniv Fed Sao Paulo UNIFESP, Dept Ciencias Mar, BR-11070100 Baixada Santista, BrazilNIOZ Royal Netherlands Inst Sea Res, Dept Marine Microbiol & Biogeochem, POB 59, NL-1790 AB Den Burg, NetherlandsUniv Utrecht, POB 59, NL-1790 AB Den Burg, NetherlandsUniv Amsterdam, Dept Aquat Microbiol, IBED, NL-1090 GE Amsterdam, NetherlandsUniv Fed Rio de Janeiro, COPPE, SAGE, BR-21941950 Rio de Janeiro, BrazilUniv Fed Sao Paulo UNIFESP, Dept Ciencias Mar, BR-11070100 Baixada Santista, BrazilWeb of ScienceCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Ciência sem fronteiras programCiencia sem fronteiras program: 864.14.004Nature Publishing Group2020-06-26T16:30:17Z2020-06-26T16:30:17Z2017info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttps://dx.doi.org/10.1038/ncomms15955Nature Communications. London, v. 8, p. -, 2017.10.1038/ncomms15955WOS000404780000001.pdf2041-1723https://repositorio.unifesp.br/handle/11600/53458WOS:000404780000001ark:/48912/001300000gnvtengNature CommunicationsLondoninfo:eu-repo/semantics/openAccessCoutinho, Felipe HernandesSilveira, Cynthia Barbosa daGregoracci, Gustavo Bueno [UNIFESP]Thompson, Cristiane CarneiroEdwards, Robert A.Brussaard, Corina P. D. (Cornelia Paula Dorothea)Dutilh, Bas E.Thompson, Fabiano Lopesreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-16T16:00:59Zoai:repositorio.unifesp.br/:11600/53458Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T20:17:31.484914Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
title Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
spellingShingle Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Coutinho, Felipe Hernandes
Coutinho, Felipe Hernandes
title_short Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
title_full Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
title_fullStr Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
title_full_unstemmed Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
title_sort Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
author Coutinho, Felipe Hernandes
author_facet Coutinho, Felipe Hernandes
Coutinho, Felipe Hernandes
Silveira, Cynthia Barbosa da
Gregoracci, Gustavo Bueno [UNIFESP]
Thompson, Cristiane Carneiro
Edwards, Robert A.
Brussaard, Corina P. D. (Cornelia Paula Dorothea)
Dutilh, Bas E.
Thompson, Fabiano Lopes
Silveira, Cynthia Barbosa da
Gregoracci, Gustavo Bueno [UNIFESP]
Thompson, Cristiane Carneiro
Edwards, Robert A.
Brussaard, Corina P. D. (Cornelia Paula Dorothea)
Dutilh, Bas E.
Thompson, Fabiano Lopes
author_role author
author2 Silveira, Cynthia Barbosa da
Gregoracci, Gustavo Bueno [UNIFESP]
Thompson, Cristiane Carneiro
Edwards, Robert A.
Brussaard, Corina P. D. (Cornelia Paula Dorothea)
Dutilh, Bas E.
Thompson, Fabiano Lopes
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Coutinho, Felipe Hernandes
Silveira, Cynthia Barbosa da
Gregoracci, Gustavo Bueno [UNIFESP]
Thompson, Cristiane Carneiro
Edwards, Robert A.
Brussaard, Corina P. D. (Cornelia Paula Dorothea)
Dutilh, Bas E.
Thompson, Fabiano Lopes
description Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes.
publishDate 2017
dc.date.none.fl_str_mv 2017
2020-06-26T16:30:17Z
2020-06-26T16:30:17Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://dx.doi.org/10.1038/ncomms15955
Nature Communications. London, v. 8, p. -, 2017.
10.1038/ncomms15955
WOS000404780000001.pdf
2041-1723
https://repositorio.unifesp.br/handle/11600/53458
WOS:000404780000001
dc.identifier.dark.fl_str_mv ark:/48912/001300000gnvt
url https://dx.doi.org/10.1038/ncomms15955
https://repositorio.unifesp.br/handle/11600/53458
identifier_str_mv Nature Communications. London, v. 8, p. -, 2017.
10.1038/ncomms15955
WOS000404780000001.pdf
2041-1723
WOS:000404780000001
ark:/48912/001300000gnvt
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Nature Communications
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
application/pdf
dc.coverage.none.fl_str_mv London
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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dc.identifier.doi.none.fl_str_mv 10.1038/ncomms15955