Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
dARK ID: | ark:/48912/001300000gnvt |
DOI: | 10.1038/ncomms15955 |
Texto Completo: | https://dx.doi.org/10.1038/ncomms15955 https://repositorio.unifesp.br/handle/11600/53458 |
Resumo: | Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes. |
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Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceansMarine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes.Univ Fed Rio de Janeiro, IB, BR-21944970 Rio de Janeiro, BrazilRadboud Univ Nijmegen, Radboud Inst Mol Life Sci, CMBI, Med Ctr, NL-6500 HB Nijmegen, NetherlandsUniv Utrecht, Theoret Biol & Bioinformat, NL-3584 CH Utrecht, NetherlandsSan Diego State Univ, Dept Biol, San Diego, CA 92182 USAUniv Fed Sao Paulo UNIFESP, Dept Ciencias Mar, BR-11070100 Baixada Santista, BrazilNIOZ Royal Netherlands Inst Sea Res, Dept Marine Microbiol & Biogeochem, POB 59, NL-1790 AB Den Burg, NetherlandsUniv Utrecht, POB 59, NL-1790 AB Den Burg, NetherlandsUniv Amsterdam, Dept Aquat Microbiol, IBED, NL-1090 GE Amsterdam, NetherlandsUniv Fed Rio de Janeiro, COPPE, SAGE, BR-21941950 Rio de Janeiro, BrazilUniv Fed Sao Paulo UNIFESP, Dept Ciencias Mar, BR-11070100 Baixada Santista, BrazilWeb of ScienceCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Ciência sem fronteiras programCiencia sem fronteiras program: 864.14.004Nature Publishing Group2020-06-26T16:30:17Z2020-06-26T16:30:17Z2017info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttps://dx.doi.org/10.1038/ncomms15955Nature Communications. London, v. 8, p. -, 2017.10.1038/ncomms15955WOS000404780000001.pdf2041-1723https://repositorio.unifesp.br/handle/11600/53458WOS:000404780000001ark:/48912/001300000gnvtengNature CommunicationsLondoninfo:eu-repo/semantics/openAccessCoutinho, Felipe HernandesSilveira, Cynthia Barbosa daGregoracci, Gustavo Bueno [UNIFESP]Thompson, Cristiane CarneiroEdwards, Robert A.Brussaard, Corina P. D. (Cornelia Paula Dorothea)Dutilh, Bas E.Thompson, Fabiano Lopesreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-16T16:00:59Zoai:repositorio.unifesp.br/:11600/53458Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-12-11T20:17:31.484914Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
title |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
spellingShingle |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans Coutinho, Felipe Hernandes Coutinho, Felipe Hernandes |
title_short |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
title_full |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
title_fullStr |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
title_full_unstemmed |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
title_sort |
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans |
author |
Coutinho, Felipe Hernandes |
author_facet |
Coutinho, Felipe Hernandes Coutinho, Felipe Hernandes Silveira, Cynthia Barbosa da Gregoracci, Gustavo Bueno [UNIFESP] Thompson, Cristiane Carneiro Edwards, Robert A. Brussaard, Corina P. D. (Cornelia Paula Dorothea) Dutilh, Bas E. Thompson, Fabiano Lopes Silveira, Cynthia Barbosa da Gregoracci, Gustavo Bueno [UNIFESP] Thompson, Cristiane Carneiro Edwards, Robert A. Brussaard, Corina P. D. (Cornelia Paula Dorothea) Dutilh, Bas E. Thompson, Fabiano Lopes |
author_role |
author |
author2 |
Silveira, Cynthia Barbosa da Gregoracci, Gustavo Bueno [UNIFESP] Thompson, Cristiane Carneiro Edwards, Robert A. Brussaard, Corina P. D. (Cornelia Paula Dorothea) Dutilh, Bas E. Thompson, Fabiano Lopes |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Coutinho, Felipe Hernandes Silveira, Cynthia Barbosa da Gregoracci, Gustavo Bueno [UNIFESP] Thompson, Cristiane Carneiro Edwards, Robert A. Brussaard, Corina P. D. (Cornelia Paula Dorothea) Dutilh, Bas E. Thompson, Fabiano Lopes |
description |
Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete genomes. These outnumber all currently known phage genomes in marine habitats and include members of previously uncharacterized lineages. We designed a new method for host prediction based on co-occurrence associations that reveals these viruses infect dominant members of the marine microbiome such as Prochlorococcus and Pelagibacter. A negative association between host abundance and the virus-to-host ratio supports the recently proposed Piggyback-the-Winner model of reduced phage lysis at higher host densities. An analysis of the abundance patterns of viruses throughout the oceans revealed how marine viral communities adapt to various seasonal, temperature and photic regimes according to targeted hosts and the diversity of auxiliary metabolic genes. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017 2020-06-26T16:30:17Z 2020-06-26T16:30:17Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://dx.doi.org/10.1038/ncomms15955 Nature Communications. London, v. 8, p. -, 2017. 10.1038/ncomms15955 WOS000404780000001.pdf 2041-1723 https://repositorio.unifesp.br/handle/11600/53458 WOS:000404780000001 |
dc.identifier.dark.fl_str_mv |
ark:/48912/001300000gnvt |
url |
https://dx.doi.org/10.1038/ncomms15955 https://repositorio.unifesp.br/handle/11600/53458 |
identifier_str_mv |
Nature Communications. London, v. 8, p. -, 2017. 10.1038/ncomms15955 WOS000404780000001.pdf 2041-1723 WOS:000404780000001 ark:/48912/001300000gnvt |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Nature Communications |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- application/pdf |
dc.coverage.none.fl_str_mv |
London |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
_version_ |
1822219216558751744 |
dc.identifier.doi.none.fl_str_mv |
10.1038/ncomms15955 |