Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia

Detalhes bibliográficos
Autor(a) principal: Pinaya, Walter H. L.
Data de Publicação: 2016
Outros Autores: Gadelha, Ary [UNIFESP], Doyle, Orla M., Noto, Cristiano [UNIFESP], Zugman, Andre [UNIFESP], Cordeiro, Quirino [UNIFESP], Jackowski, Andrea Parolin [UNIFESP], Bressan, Rodrigo Affonseca [UNIFESP], Sato, Joao Ricardo [UNIFESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1038/srep38897
https://repositorio.unifesp.br/handle/11600/56553
Resumo: Neuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses.
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spelling Using deep belief network modelling to characterize differences in brain morphometry in schizophreniaNeuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses.Univ Fed ABC, Ctr Math Computat & Cognit, Santo Andre, BrazilUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, BrazilKings Coll London, Inst Psychiat Psychol & Neurosci, Dept Neuroimaging, London, EnglandUniv Fed Sao Paulo, Interdisciplinary Lab Clin Neurosci LiNC, Sao Paulo, BrazilFac Ciencias Med Santa Casa Sao Paulo, Dept Psychiat, Sao Paulo, BrazilDepartment of Psychiatry. Universidade Federal de São Paulo, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)FAPESP: 2013/05168-7FAPESP: 2013/10498-6Nature Publishing Group2020-07-31T12:47:03Z2020-07-31T12:47:03Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep38897Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep38897WOS000389656800001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/56553WOS:000389656800001engScientific ReportsLondoninfo:eu-repo/semantics/openAccessPinaya, Walter H. L.Gadelha, Ary [UNIFESP]Doyle, Orla M.Noto, Cristiano [UNIFESP]Zugman, Andre [UNIFESP]Cordeiro, Quirino [UNIFESP]Jackowski, Andrea Parolin [UNIFESP]Bressan, Rodrigo Affonseca [UNIFESP]Sato, Joao Ricardo [UNIFESP]reponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T12:04:03Zoai:repositorio.unifesp.br/:11600/56553Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T12:04:03Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
title Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
spellingShingle Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
Pinaya, Walter H. L.
title_short Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
title_full Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
title_fullStr Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
title_full_unstemmed Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
title_sort Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
author Pinaya, Walter H. L.
author_facet Pinaya, Walter H. L.
Gadelha, Ary [UNIFESP]
Doyle, Orla M.
Noto, Cristiano [UNIFESP]
Zugman, Andre [UNIFESP]
Cordeiro, Quirino [UNIFESP]
Jackowski, Andrea Parolin [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Sato, Joao Ricardo [UNIFESP]
author_role author
author2 Gadelha, Ary [UNIFESP]
Doyle, Orla M.
Noto, Cristiano [UNIFESP]
Zugman, Andre [UNIFESP]
Cordeiro, Quirino [UNIFESP]
Jackowski, Andrea Parolin [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Sato, Joao Ricardo [UNIFESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Pinaya, Walter H. L.
Gadelha, Ary [UNIFESP]
Doyle, Orla M.
Noto, Cristiano [UNIFESP]
Zugman, Andre [UNIFESP]
Cordeiro, Quirino [UNIFESP]
Jackowski, Andrea Parolin [UNIFESP]
Bressan, Rodrigo Affonseca [UNIFESP]
Sato, Joao Ricardo [UNIFESP]
description Neuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses.
publishDate 2016
dc.date.none.fl_str_mv 2016
2020-07-31T12:47:03Z
2020-07-31T12:47:03Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/srep38897
Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep38897
WOS000389656800001.pdf
2045-2322
https://repositorio.unifesp.br/handle/11600/56553
WOS:000389656800001
url http://dx.doi.org/10.1038/srep38897
https://repositorio.unifesp.br/handle/11600/56553
identifier_str_mv Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep38897
WOS000389656800001.pdf
2045-2322
WOS:000389656800001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
application/pdf
dc.coverage.none.fl_str_mv London
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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