Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
Texto Completo: | http://dx.doi.org/10.1038/srep38897 https://repositorio.unifesp.br/handle/11600/56553 |
Resumo: | Neuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses. |
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Repositório Institucional da UNIFESP |
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Using deep belief network modelling to characterize differences in brain morphometry in schizophreniaNeuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses.Univ Fed ABC, Ctr Math Computat & Cognit, Santo Andre, BrazilUniv Fed Sao Paulo, Dept Psychiat, Sao Paulo, BrazilKings Coll London, Inst Psychiat Psychol & Neurosci, Dept Neuroimaging, London, EnglandUniv Fed Sao Paulo, Interdisciplinary Lab Clin Neurosci LiNC, Sao Paulo, BrazilFac Ciencias Med Santa Casa Sao Paulo, Dept Psychiat, Sao Paulo, BrazilDepartment of Psychiatry. Universidade Federal de São Paulo, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)FAPESP: 2013/05168-7FAPESP: 2013/10498-6Nature Publishing Group2020-07-31T12:47:03Z2020-07-31T12:47:03Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep38897Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep38897WOS000389656800001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/56553WOS:000389656800001engScientific ReportsLondoninfo:eu-repo/semantics/openAccessPinaya, Walter H. L.Gadelha, Ary [UNIFESP]Doyle, Orla M.Noto, Cristiano [UNIFESP]Zugman, Andre [UNIFESP]Cordeiro, Quirino [UNIFESP]Jackowski, Andrea Parolin [UNIFESP]Bressan, Rodrigo Affonseca [UNIFESP]Sato, Joao Ricardo [UNIFESP]reponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T12:04:03Zoai:repositorio.unifesp.br/:11600/56553Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T12:04:03Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
title |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
spellingShingle |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia Pinaya, Walter H. L. |
title_short |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
title_full |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
title_fullStr |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
title_full_unstemmed |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
title_sort |
Using deep belief network modelling to characterize differences in brain morphometry in schizophrenia |
author |
Pinaya, Walter H. L. |
author_facet |
Pinaya, Walter H. L. Gadelha, Ary [UNIFESP] Doyle, Orla M. Noto, Cristiano [UNIFESP] Zugman, Andre [UNIFESP] Cordeiro, Quirino [UNIFESP] Jackowski, Andrea Parolin [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Sato, Joao Ricardo [UNIFESP] |
author_role |
author |
author2 |
Gadelha, Ary [UNIFESP] Doyle, Orla M. Noto, Cristiano [UNIFESP] Zugman, Andre [UNIFESP] Cordeiro, Quirino [UNIFESP] Jackowski, Andrea Parolin [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Sato, Joao Ricardo [UNIFESP] |
author2_role |
author author author author author author author author |
dc.contributor.author.fl_str_mv |
Pinaya, Walter H. L. Gadelha, Ary [UNIFESP] Doyle, Orla M. Noto, Cristiano [UNIFESP] Zugman, Andre [UNIFESP] Cordeiro, Quirino [UNIFESP] Jackowski, Andrea Parolin [UNIFESP] Bressan, Rodrigo Affonseca [UNIFESP] Sato, Joao Ricardo [UNIFESP] |
description |
Neuroimaging-based models contribute to increasing our understanding of schizophrenia pathophysiology and can reveal the underlying characteristics of this and other clinical conditions. However, the considerable variability in reported neuroimaging results mirrors the heterogeneity of the disorder. Machine learning methods capable of representing invariant features could circumvent this problem. In this structural MRI study, we trained a deep learning model known as deep belief network (DBN) to extract features from brain morphometry data and investigated its performance in discriminating between healthy controls (N = 83) and patients with schizophrenia (N = 143). We further analysed performance in classifying patients with a first-episode psychosis (N = 32). The DBN highlighted differences between classes, especially in the frontal, temporal, parietal, and insular cortices, and in some subcortical regions, including the corpus callosum, putamen, and cerebellum. The DBN was slightly more accurate as a classifier (accuracy = 73.6%) than the support vector machine (accuracy = 68.1%). Finally, the error rate of the DBN in classifying first-episode patients was 56.3%, indicating that the representations learned from patients with schizophrenia and healthy controls were not suitable to define these patients. Our data suggest that deep learning could improve our understanding of psychiatric disorders such as schizophrenia by improving neuromorphometric analyses. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016 2020-07-31T12:47:03Z 2020-07-31T12:47:03Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/srep38897 Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep38897 WOS000389656800001.pdf 2045-2322 https://repositorio.unifesp.br/handle/11600/56553 WOS:000389656800001 |
url |
http://dx.doi.org/10.1038/srep38897 https://repositorio.unifesp.br/handle/11600/56553 |
identifier_str_mv |
Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep38897 WOS000389656800001.pdf 2045-2322 WOS:000389656800001 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientific Reports |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- application/pdf |
dc.coverage.none.fl_str_mv |
London |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
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1814268417826357248 |