Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients

Detalhes bibliográficos
Autor(a) principal: Liverio, Harisson Oliveira
Data de Publicação: 2017
Outros Autores: Ruiz, Luciana da Silva, de Freitas, Roseli Santos, Nishikaku, Angela Satie [UNIFESP], de Souza, Ana Clara, Paula, Claudete Rodrigues, Domaneschi, Carina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: https://repositorio.unifesp.br/handle/11600/56262
http://dx.doi.org/10.1590/S1678-9946201759014
Resumo: The aim of this study was to assess a collection of yeasts to verify the presence of Candida dubliniensis among strains isolated from the oral mucosa of AIDS pediatric patients which were initially characterized as Candida albicans by the traditional phenotypic method, as well as to evaluate the main phenotypic methods used in the discrimination between the two species and confirm the identification through genotypic techniques, i.e., DNA sequencing. Twenty-nine samples of C. albicans isolated from this population and kept in a fungi collection were evaluated and re-characterized. In order to differentiate the two species, phenotypic tests (Thermotolerance tests, Chromogenic medium, Staib agar, Tobacco agar, Hypertonic medium) were performed and genotypic techniques using DNA sequencing were employed for confirmation of isolated species. Susceptibility and specificity were calculated for each test. No phenotypic test alone was sufficient to provide definitive identification of C. dubliniensis or C. albicans, as opposed to results of molecular tests. After amplification and sequencing of specific regions of the 29 studied strains, 93.1% of the isolates were identified as C. albicans and 6.9% as C. dubliniensis. The Staib agar assay showed a higher susceptibility (96.3%) in comparison with other phenotypic techniques. Therefore, genotypic methods are indispensable for the conclusive identification and differentiation between these species.
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spelling Liverio, Harisson OliveiraRuiz, Luciana da Silvade Freitas, Roseli SantosNishikaku, Angela Satie [UNIFESP]de Souza, Ana ClaraPaula, Claudete RodriguesDomaneschi, Carina2020-07-31T12:46:31Z2020-07-31T12:46:31Z2017Revista Do Instituto De Medicina Tropical De Sao Paulo. Sao Paulo, v. 59, p. -, 2017.0036-4665https://repositorio.unifesp.br/handle/11600/56262http://dx.doi.org/10.1590/S1678-9946201759014S0036-46652017005000209.pdfS0036-4665201700500020910.1590/S1678-9946201759014WOS:000404610000003The aim of this study was to assess a collection of yeasts to verify the presence of Candida dubliniensis among strains isolated from the oral mucosa of AIDS pediatric patients which were initially characterized as Candida albicans by the traditional phenotypic method, as well as to evaluate the main phenotypic methods used in the discrimination between the two species and confirm the identification through genotypic techniques, i.e., DNA sequencing. Twenty-nine samples of C. albicans isolated from this population and kept in a fungi collection were evaluated and re-characterized. In order to differentiate the two species, phenotypic tests (Thermotolerance tests, Chromogenic medium, Staib agar, Tobacco agar, Hypertonic medium) were performed and genotypic techniques using DNA sequencing were employed for confirmation of isolated species. Susceptibility and specificity were calculated for each test. No phenotypic test alone was sufficient to provide definitive identification of C. dubliniensis or C. albicans, as opposed to results of molecular tests. After amplification and sequencing of specific regions of the 29 studied strains, 93.1% of the isolates were identified as C. albicans and 6.9% as C. dubliniensis. The Staib agar assay showed a higher susceptibility (96.3%) in comparison with other phenotypic techniques. Therefore, genotypic methods are indispensable for the conclusive identification and differentiation between these species.Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP)Univ Sao Paulo, Fac Odontol, Dept Estomatol, Ave Prof Lineu Prestes 2227, BR-05508000 Sao Paulo, SP, BrazilAdolfo Lutz Inst, Nucleo Ciencias Biomed, Sao Paulo, BrazilUniv Sao Paulo, Inst Med Trop Sao Paulo, Sao Paulo, SP, BrazilUniv Fed Sao Paulo, Lab Especial Micol, Sao Paulo, SP, BrazilUniv Fed Sao Paulo, Lab Especial Micol, Sao Paulo, SP, BrazilWeb of Science-engInst Medicina Tropical Sao PauloRevista Do Instituto De Medicina Tropical De Sao PauloCandida dubliniensisCandida albicansChildrenHIV/AIDS Phenotypic and genotypic methodsPhenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patientsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleSao Paulo59info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESPORIGINALS0036-46652017005000209.pdfapplication/pdf188570${dspace.ui.url}/bitstream/11600/56262/1/S0036-46652017005000209.pdff9d5510ec1d5418e46e335a3fbc1aab7MD51open accessTEXTS0036-46652017005000209.pdf.txtS0036-46652017005000209.pdf.txtExtracted texttext/plain27716${dspace.ui.url}/bitstream/11600/56262/2/S0036-46652017005000209.pdf.txte77dcc91eb0c2a87a7872eaed3bb87dbMD52open accessTHUMBNAILS0036-46652017005000209.pdf.jpgS0036-46652017005000209.pdf.jpgIM Thumbnailimage/jpeg7042${dspace.ui.url}/bitstream/11600/56262/4/S0036-46652017005000209.pdf.jpg98aec7da09e0c9dc4d4b6bf86e0c579bMD54open access11600/562622022-08-01 00:43:49.583open accessoai:repositorio.unifesp.br:11600/56262Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestopendoar:34652022-08-01T03:43:49Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.en.fl_str_mv Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
title Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
spellingShingle Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
Liverio, Harisson Oliveira
Candida dubliniensis
Candida albicans
Children
HIV/AIDS Phenotypic and genotypic methods
title_short Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
title_full Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
title_fullStr Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
title_full_unstemmed Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
title_sort Phenotypic and genotypic detection of Candida albicans and Candida dubliniensis strains isolated from oral mucosa of AIDS pediatric patients
author Liverio, Harisson Oliveira
author_facet Liverio, Harisson Oliveira
Ruiz, Luciana da Silva
de Freitas, Roseli Santos
Nishikaku, Angela Satie [UNIFESP]
de Souza, Ana Clara
Paula, Claudete Rodrigues
Domaneschi, Carina
author_role author
author2 Ruiz, Luciana da Silva
de Freitas, Roseli Santos
Nishikaku, Angela Satie [UNIFESP]
de Souza, Ana Clara
Paula, Claudete Rodrigues
Domaneschi, Carina
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Liverio, Harisson Oliveira
Ruiz, Luciana da Silva
de Freitas, Roseli Santos
Nishikaku, Angela Satie [UNIFESP]
de Souza, Ana Clara
Paula, Claudete Rodrigues
Domaneschi, Carina
dc.subject.eng.fl_str_mv Candida dubliniensis
Candida albicans
Children
HIV/AIDS Phenotypic and genotypic methods
topic Candida dubliniensis
Candida albicans
Children
HIV/AIDS Phenotypic and genotypic methods
description The aim of this study was to assess a collection of yeasts to verify the presence of Candida dubliniensis among strains isolated from the oral mucosa of AIDS pediatric patients which were initially characterized as Candida albicans by the traditional phenotypic method, as well as to evaluate the main phenotypic methods used in the discrimination between the two species and confirm the identification through genotypic techniques, i.e., DNA sequencing. Twenty-nine samples of C. albicans isolated from this population and kept in a fungi collection were evaluated and re-characterized. In order to differentiate the two species, phenotypic tests (Thermotolerance tests, Chromogenic medium, Staib agar, Tobacco agar, Hypertonic medium) were performed and genotypic techniques using DNA sequencing were employed for confirmation of isolated species. Susceptibility and specificity were calculated for each test. No phenotypic test alone was sufficient to provide definitive identification of C. dubliniensis or C. albicans, as opposed to results of molecular tests. After amplification and sequencing of specific regions of the 29 studied strains, 93.1% of the isolates were identified as C. albicans and 6.9% as C. dubliniensis. The Staib agar assay showed a higher susceptibility (96.3%) in comparison with other phenotypic techniques. Therefore, genotypic methods are indispensable for the conclusive identification and differentiation between these species.
publishDate 2017
dc.date.issued.fl_str_mv 2017
dc.date.accessioned.fl_str_mv 2020-07-31T12:46:31Z
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dc.identifier.citation.fl_str_mv Revista Do Instituto De Medicina Tropical De Sao Paulo. Sao Paulo, v. 59, p. -, 2017.
dc.identifier.uri.fl_str_mv https://repositorio.unifesp.br/handle/11600/56262
http://dx.doi.org/10.1590/S1678-9946201759014
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dc.identifier.file.none.fl_str_mv S0036-46652017005000209.pdf
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dc.identifier.doi.none.fl_str_mv 10.1590/S1678-9946201759014
dc.identifier.wos.none.fl_str_mv WOS:000404610000003
identifier_str_mv Revista Do Instituto De Medicina Tropical De Sao Paulo. Sao Paulo, v. 59, p. -, 2017.
0036-4665
S0036-46652017005000209.pdf
S0036-46652017005000209
10.1590/S1678-9946201759014
WOS:000404610000003
url https://repositorio.unifesp.br/handle/11600/56262
http://dx.doi.org/10.1590/S1678-9946201759014
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