Investigação das bases moleculares do câncer não medular familiar da tireoide

Detalhes bibliográficos
Autor(a) principal: Lima, Erika Urbano de [UNIFESP]
Data de Publicação: 2018
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6964036
https://repositorio.unifesp.br/handle/11600/52332
Resumo: Almost 95% of thyroid cancer cases originate from follicular thyroid cells (NMTC). The majority are sporadic (90%), but 3-9% correspond to familial forms (FNMTC) characterized by three or more first-degree relatives affected by thyroid cancer. It can be divided into different subgroups: familial papillary thyroid carcinoma (PTC) with or without oxyphilia cell, familial PTC with papillary renal cell carcinoma, and familial PTC with multinodular goiter. Some chromosomal loci and genes were associated with CNMFT in families with specific phenotypes. It has been proposed that FNMTC may be a polygenic disease with autosomal dominant inheritance with variable penetrance. The objective of this study was to identify genetic variants involved in the susceptibility to FNMTC in two Brazilian families using Whole Exome Sequencing (WES) and specific bioinformatics analyses. WES of DNA samples from peripheral blood leukocyte was performed using SureSelectXT Human All Exon V6+UTR Capture Library kit (Agilent) and the Illumina® NextSeq ™ 500 platform. For the variants selection an extensive bioinformatics analysis was performed using 12 specific programs and 4 population databases (ExAc, AbraOM, dbSNP and Ensembl). In the first family from Manaus (Amazonas) and characterized as familial PTC with multinodular goiter, the c.C110A variant of the ACTL8 gene was exclusively present in all affected individuals. The analysis showed that the ACTL8 variant may impair the protein function and structure, and that this protein could interact with the cytoskeleton and epithelial differentiation proteins. The c.C623T and c.C2654T variants of the SRPX2 and EPHB1 genes were identified in the second family from Jacobina (Bahia) classified as familial PTC without oxyphilic cells. Both variants were classified as damaging in all prediction analyzes and the joint presence of these variants showed increased odds ratio to develop the disease (OR= 51; 95% CI: 1.7046 - 1525.9024; P=0.0234), with 100% of sensitivity and 88.9% of specificity. It was also was observed that both proteins (SRPX2 and EPHB1) would participate in a network of protein interactions related to MAPK pathway activation.These results suggest that the ACTL8, SRPX2 and EPBH1 genes variants identified in this study confer susceptibility to the development of FNMTC in these particular families. These results are in agreement with the literature that suggests that the genetic factors of FNMTC susceptibility are specific to each family.
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spelling Investigação das bases moleculares do câncer não medular familiar da tireoideInvestigation of the molecular basis of nonmedullary thyroid cancerNeoplasms of the thyroid gland / geneticsNeoplasms of the thyroid gland / etiologyExomaSusceptibilityNeoplasias da glândula tireoide/genéticaNeoplasias da glândula tireoide/etiologiaExomaSusceptibilidadeAlmost 95% of thyroid cancer cases originate from follicular thyroid cells (NMTC). The majority are sporadic (90%), but 3-9% correspond to familial forms (FNMTC) characterized by three or more first-degree relatives affected by thyroid cancer. It can be divided into different subgroups: familial papillary thyroid carcinoma (PTC) with or without oxyphilia cell, familial PTC with papillary renal cell carcinoma, and familial PTC with multinodular goiter. Some chromosomal loci and genes were associated with CNMFT in families with specific phenotypes. It has been proposed that FNMTC may be a polygenic disease with autosomal dominant inheritance with variable penetrance. The objective of this study was to identify genetic variants involved in the susceptibility to FNMTC in two Brazilian families using Whole Exome Sequencing (WES) and specific bioinformatics analyses. WES of DNA samples from peripheral blood leukocyte was performed using SureSelectXT Human All Exon V6+UTR Capture Library kit (Agilent) and the Illumina® NextSeq ™ 500 platform. For the variants selection an extensive bioinformatics analysis was performed using 12 specific programs and 4 population databases (ExAc, AbraOM, dbSNP and Ensembl). In the first family from Manaus (Amazonas) and characterized as familial PTC with multinodular goiter, the c.C110A variant of the ACTL8 gene was exclusively present in all affected individuals. The analysis showed that the ACTL8 variant may impair the protein function and structure, and that this protein could interact with the cytoskeleton and epithelial differentiation proteins. The c.C623T and c.C2654T variants of the SRPX2 and EPHB1 genes were identified in the second family from Jacobina (Bahia) classified as familial PTC without oxyphilic cells. Both variants were classified as damaging in all prediction analyzes and the joint presence of these variants showed increased odds ratio to develop the disease (OR= 51; 95% CI: 1.7046 - 1525.9024; P=0.0234), with 100% of sensitivity and 88.9% of specificity. It was also was observed that both proteins (SRPX2 and EPHB1) would participate in a network of protein interactions related to MAPK pathway activation.These results suggest that the ACTL8, SRPX2 and EPBH1 genes variants identified in this study confer susceptibility to the development of FNMTC in these particular families. These results are in agreement with the literature that suggests that the genetic factors of FNMTC susceptibility are specific to each family.Aproximadamente 95% dos casos de câncer da tireoide se originam em células foliculares (CNMT). A grande maioria são esporádicos (90%), porém de 3-9% correspondem as formas familiares (CNMFT), caracterizadas pela existência de três ou mais familiares de primeiro grau afetados pelo câncer da tireoide. Pode ser dividido em diferentes subgrupos: carcinoma papilífero da tireoide (CPT) familiar com ou sem a presença de células oxifilias, CPT familiar com tumor papilar renal e CPT familiar com bócio multinodular. Alguns locus cromossômicos e genes foram associados a famílias com fenótipos específicos de CNMFT. Acredita-se que possa ser uma doença poligênica com herança autossômica dominante e penetrância variável. O objetivo deste estudo foi identificar variantes genéticas envolvidas na predisposição ao CNMFT em duas famílias brasileiras utilizando o sequênciamento do exoma (Whole Exome Sequencing - WES) e análises específicas de bioinformática. Para o WES de amostras de DNA de leucócitos do sangue periférico foi utilizando o kit SureSelectXT Human All Exon V6+UTR Capture Library (Agilent) e a plataforma Illumina® NextSeq™500. Para a seleção das variantes foi realizada uma extensa análise de bioinformática utilizando 12 programas específicos e 4 bancos de dados populacionais (ExAc, AbraOM, dbSNP e Ensembl). Na primeira família, oriunda da cidade de Manaus (Amazonas) e caracterizada como CPT familiar com bócio multinodular foi identificada a variante c.C110A do gene ACTL8, presente exclusivamente em todos os indivíduos afetados. As análises mostraram que a variante do gene ACTL8 pode prejudicar a função e estrutura protéica, a qual pode interagir com proteínas de citoesqueleto e de diferenciação epitelial. Na segunda família oriunda da cidade de Jacobina (Bahia) e classificada como CPT familiar sem células oxifílicas foram identificadas as variantes c.C623T e c.C2654T dos genes SRPX2 e EPHB1. Ambas variantes foram classificadas como prejudiciais em todas as análises de predição e a presença conjunta destas mostrou aumento da razão de chances para desenvolver a doença (OR= 51; 95% IC: 1,7046 - 1525,9024; P=0.0234), com sensibilidade de 100% e especificidade de 88,9%. Também foi observado que ambas proteínas (SRPX2 e EPHB1) participariam de uma rede de interações relacionada à ativação da via MAPK. Estes resutados sugerem que as variantes dos genes ACTL8, SRPX2 e EPBH1 identificadas neste estudo conferem susceptibilidade para o desenvolvimento do CNMF nestas famílias em particular. Estes resultados vão de encontro com a literatura que sugere que os fatores genéticos de suceptibilidade do CNMFT são específicos para cada família.Dados abertos - Sucupira - Teses e dissertações (2018)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Universidade Federal de São Paulo (UNIFESP)Rubio, Ileana Gabriela Sanchez de [UNIFESP]http://lattes.cnpq.br/3231635049279767http://lattes.cnpq.br/4993081281957671Universidade Federal de São Paulo (UNIFESP)Lima, Erika Urbano de [UNIFESP]2020-03-25T11:43:44Z2020-03-25T11:43:44Z2018-12-20info:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/publishedVersion126 f.application/pdfhttps://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=69640362018-0264.pdfhttps://repositorio.unifesp.br/handle/11600/52332porSão Pauloinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-10T09:38:23Zoai:repositorio.unifesp.br/:11600/52332Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-10T09:38:23Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Investigação das bases moleculares do câncer não medular familiar da tireoide
Investigation of the molecular basis of nonmedullary thyroid cancer
title Investigação das bases moleculares do câncer não medular familiar da tireoide
spellingShingle Investigação das bases moleculares do câncer não medular familiar da tireoide
Lima, Erika Urbano de [UNIFESP]
Neoplasms of the thyroid gland / genetics
Neoplasms of the thyroid gland / etiology
Exoma
Susceptibility
Neoplasias da glândula tireoide/genética
Neoplasias da glândula tireoide/etiologia
Exoma
Susceptibilidade
title_short Investigação das bases moleculares do câncer não medular familiar da tireoide
title_full Investigação das bases moleculares do câncer não medular familiar da tireoide
title_fullStr Investigação das bases moleculares do câncer não medular familiar da tireoide
title_full_unstemmed Investigação das bases moleculares do câncer não medular familiar da tireoide
title_sort Investigação das bases moleculares do câncer não medular familiar da tireoide
author Lima, Erika Urbano de [UNIFESP]
author_facet Lima, Erika Urbano de [UNIFESP]
author_role author
dc.contributor.none.fl_str_mv Rubio, Ileana Gabriela Sanchez de [UNIFESP]
http://lattes.cnpq.br/3231635049279767
http://lattes.cnpq.br/4993081281957671
Universidade Federal de São Paulo (UNIFESP)
dc.contributor.author.fl_str_mv Lima, Erika Urbano de [UNIFESP]
dc.subject.por.fl_str_mv Neoplasms of the thyroid gland / genetics
Neoplasms of the thyroid gland / etiology
Exoma
Susceptibility
Neoplasias da glândula tireoide/genética
Neoplasias da glândula tireoide/etiologia
Exoma
Susceptibilidade
topic Neoplasms of the thyroid gland / genetics
Neoplasms of the thyroid gland / etiology
Exoma
Susceptibility
Neoplasias da glândula tireoide/genética
Neoplasias da glândula tireoide/etiologia
Exoma
Susceptibilidade
description Almost 95% of thyroid cancer cases originate from follicular thyroid cells (NMTC). The majority are sporadic (90%), but 3-9% correspond to familial forms (FNMTC) characterized by three or more first-degree relatives affected by thyroid cancer. It can be divided into different subgroups: familial papillary thyroid carcinoma (PTC) with or without oxyphilia cell, familial PTC with papillary renal cell carcinoma, and familial PTC with multinodular goiter. Some chromosomal loci and genes were associated with CNMFT in families with specific phenotypes. It has been proposed that FNMTC may be a polygenic disease with autosomal dominant inheritance with variable penetrance. The objective of this study was to identify genetic variants involved in the susceptibility to FNMTC in two Brazilian families using Whole Exome Sequencing (WES) and specific bioinformatics analyses. WES of DNA samples from peripheral blood leukocyte was performed using SureSelectXT Human All Exon V6+UTR Capture Library kit (Agilent) and the Illumina® NextSeq ™ 500 platform. For the variants selection an extensive bioinformatics analysis was performed using 12 specific programs and 4 population databases (ExAc, AbraOM, dbSNP and Ensembl). In the first family from Manaus (Amazonas) and characterized as familial PTC with multinodular goiter, the c.C110A variant of the ACTL8 gene was exclusively present in all affected individuals. The analysis showed that the ACTL8 variant may impair the protein function and structure, and that this protein could interact with the cytoskeleton and epithelial differentiation proteins. The c.C623T and c.C2654T variants of the SRPX2 and EPHB1 genes were identified in the second family from Jacobina (Bahia) classified as familial PTC without oxyphilic cells. Both variants were classified as damaging in all prediction analyzes and the joint presence of these variants showed increased odds ratio to develop the disease (OR= 51; 95% CI: 1.7046 - 1525.9024; P=0.0234), with 100% of sensitivity and 88.9% of specificity. It was also was observed that both proteins (SRPX2 and EPHB1) would participate in a network of protein interactions related to MAPK pathway activation.These results suggest that the ACTL8, SRPX2 and EPBH1 genes variants identified in this study confer susceptibility to the development of FNMTC in these particular families. These results are in agreement with the literature that suggests that the genetic factors of FNMTC susceptibility are specific to each family.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-20
2020-03-25T11:43:44Z
2020-03-25T11:43:44Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6964036
2018-0264.pdf
https://repositorio.unifesp.br/handle/11600/52332
url https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6964036
https://repositorio.unifesp.br/handle/11600/52332
identifier_str_mv 2018-0264.pdf
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 126 f.
application/pdf
dc.coverage.none.fl_str_mv São Paulo
dc.publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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