Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display

Detalhes bibliográficos
Autor(a) principal: Sousa, Cristina Soares de
Data de Publicação: 2007
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/15688
Resumo: CHAPTER II: Breast cancer is one of the main causes of death among women, as there is no primary prevention. Early detection is the main objective aiming decrease mortality and increase survival. We used phage display technology to isolate ligand peptides to breast cancer tissues in order to select potential biomarkers for the improvement of diagnosis and treatment. Two random peptide libraries with seven and twelve residues expressed in fusion with the pIII protein of the M13 bacteriophage, Ph.D.-7 and Ph.D.-12, respectively, were firstly submitted to a pre clearing by placing them in contact with proteins of normal breast tissues, in oder to eliminate peptides that may recognize healthy tissues. Remaining phages in the supernatant was further selected through three rounds of positive selection. DNA of selected phage were sequenced and translated. Peptide sequences were then submitted to bioinformatic analyzes, ELISA, Dot-blotting, western-blotting and immunohistochemistry assays to confirm the selection strategy and to provide further evidences of the putative biological targets. The immunohistochemistry analysis was performed with six selected phage (BC04, BC05, BC07, BC11, BC12, BC17) in breast cancer, and a mixture of three phage (BC11, BC12, BC17) has been tested in breast and ovary cancers, non-Hodgkin lymphoma, and melanoma. All phages presented high information content with significant ELISA indexes. The Dot-blotting and western-blotting assays have validated the selection by demonstrating high specificity to tumor proteins. The immunohistochemistry analyzes have shown specific binding only to tumor cells. The mixture of phages has recognized all types of tumor tissues, except melanoma. Three selected phage, BC04, BC05 and BC07 have specifically marked the vascular walls of tumor cells. The selected phage may be used in the future as tissue biomarkers for diagnosis and therapeutic procedures in breast cancer. The high information content and the significant data presented by all immunological assays have validated the Phage Display subtractive selection strategy. CHAPTER III: Breast cancer is the most frequent malignant pathology in the Brazilian women population, which is aggravated by diagnosis in later stages of the disease. The aim of this investigation was to select and identify ligand peptides to serum proteins of women with breast cancer through phage display in order to use them as serological biomarkers. Selection of phages was performed in three steps using a random peptide library of 12 residues (Ph.D.-12). The first two selection steps consisted of a pre clearing using the phage libraries against sera proteins of healthy individuals, followed by a second selection against sera proteins of patients with benign breast diseases. After subtraction, the library was submitted to a positive selection against sera of patients with breast cancer. Phage ligands were selected, amplified, and the DNA was sequenced and translated. Peptide sequences were subimtted bioinformatic analyses and to ELISA and dot-blotting assays to confirm selection success. All clones presented significant ELISA indexes and a high information content. The sequence IETYESTHQSPP was the most frequent and presented a high reactivity against IgG from breast cancer patients´ in the dot-blotting analysis. Clones T03, T18 and T09 presented similarity with the ubiquitin and clones T06, T19, T04, T10, T11, T14, T17 with zinc finger motifs. The fact of different clones to present similarity for the same type of protein suggests that different motifs of one same protein can be epitopes recognized by auto-antibodies or that these motifs are interacting with proteins associated to breast cancer, since biopanning was made with total serum.
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spelling Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage DisplayCâncer de mamaMama - CâncerPhage DisplayBreast cancerCNPQ::CIENCIAS BIOLOGICAS::GENETICACHAPTER II: Breast cancer is one of the main causes of death among women, as there is no primary prevention. Early detection is the main objective aiming decrease mortality and increase survival. We used phage display technology to isolate ligand peptides to breast cancer tissues in order to select potential biomarkers for the improvement of diagnosis and treatment. Two random peptide libraries with seven and twelve residues expressed in fusion with the pIII protein of the M13 bacteriophage, Ph.D.-7 and Ph.D.-12, respectively, were firstly submitted to a pre clearing by placing them in contact with proteins of normal breast tissues, in oder to eliminate peptides that may recognize healthy tissues. Remaining phages in the supernatant was further selected through three rounds of positive selection. DNA of selected phage were sequenced and translated. Peptide sequences were then submitted to bioinformatic analyzes, ELISA, Dot-blotting, western-blotting and immunohistochemistry assays to confirm the selection strategy and to provide further evidences of the putative biological targets. The immunohistochemistry analysis was performed with six selected phage (BC04, BC05, BC07, BC11, BC12, BC17) in breast cancer, and a mixture of three phage (BC11, BC12, BC17) has been tested in breast and ovary cancers, non-Hodgkin lymphoma, and melanoma. All phages presented high information content with significant ELISA indexes. The Dot-blotting and western-blotting assays have validated the selection by demonstrating high specificity to tumor proteins. The immunohistochemistry analyzes have shown specific binding only to tumor cells. The mixture of phages has recognized all types of tumor tissues, except melanoma. Three selected phage, BC04, BC05 and BC07 have specifically marked the vascular walls of tumor cells. The selected phage may be used in the future as tissue biomarkers for diagnosis and therapeutic procedures in breast cancer. The high information content and the significant data presented by all immunological assays have validated the Phage Display subtractive selection strategy. CHAPTER III: Breast cancer is the most frequent malignant pathology in the Brazilian women population, which is aggravated by diagnosis in later stages of the disease. The aim of this investigation was to select and identify ligand peptides to serum proteins of women with breast cancer through phage display in order to use them as serological biomarkers. Selection of phages was performed in three steps using a random peptide library of 12 residues (Ph.D.-12). The first two selection steps consisted of a pre clearing using the phage libraries against sera proteins of healthy individuals, followed by a second selection against sera proteins of patients with benign breast diseases. After subtraction, the library was submitted to a positive selection against sera of patients with breast cancer. Phage ligands were selected, amplified, and the DNA was sequenced and translated. Peptide sequences were subimtted bioinformatic analyses and to ELISA and dot-blotting assays to confirm selection success. All clones presented significant ELISA indexes and a high information content. The sequence IETYESTHQSPP was the most frequent and presented a high reactivity against IgG from breast cancer patients´ in the dot-blotting analysis. Clones T03, T18 and T09 presented similarity with the ubiquitin and clones T06, T19, T04, T10, T11, T14, T17 with zinc finger motifs. The fact of different clones to present similarity for the same type of protein suggests that different motifs of one same protein can be epitopes recognized by auto-antibodies or that these motifs are interacting with proteins associated to breast cancer, since biopanning was made with total serum.Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorDoutor em Genética e BioquímicaCAPITULO II: O câncer de mama é uma das principais causas de morte em mulheres e ainda não existem medidas específicas de prevenção primária. A detecção precoce é o objetivo principal, visando à diminuição da mortalidade e aumento da sobrevida. Nesse trabalho foi utilizada a técnica de Phage Display para isolar peptídeos ligantes às proteínas do tecido câncer de mama para obtenção de biomarcadores que possam ser utilizados no diagnóstico e tratamento dessa patologia. Para seleção desses peptídeos foi realizado um Bioppaning subtrativo, no qual duas bibliotecas de peptídeos Ph.D.-7 e Ph.D.-12 expressas na superfície de fago filamentoso M13 foram colocadas primeiramente em contato com proteínas de tecido de mama normal, para que os fagos ligantes a proteínas do tecido normal fossem eliminados nessa etapa, e depois foram submetidas a três ciclos de seleção. O DNA dos fagos selecionados foi seqüenciado e traduzido. As seqüências peptídicas selecionadas foram analisadas por bioinformática e pelas técnicas ELISA, dot-blotting, wertern-blotting e imunohistoquímica para confirmar o sucesso da estratégia de seleção e para fornecer novos subsídios quanto aos prováveis alvos biológicos. A análise imunohistoquímica foi realizada com seis dos fagos selecionados (BC04, BC05, BC07, BC11, BC12, BC17) em câncer de mama e com a mistura de três deles (BC11, BC12, BC17), em câncer de mama, câncer de ovário, linfoma não-hodgkin e melanoma. Todos os fagos selecionados apresentaram alto grau de informação e Razão do Indice ELISA acima de 1, o que é considerado significativo. Tanto em Dot-blotting quanto em wertern-blotting, os fagos se ligaram apenas a proteínas do tumor. Na imunohistoquímica pode-se observar marcação apenas de células tumorais. A mistura de fagos reconheceu proteínas do câncer de mama, câncer de ovário e linfoma maligno não-Hodgkin e não reconheceu proteínas do melanoma. Três fagos selecionados, BC04, BC05 e BC07 marcaram especificamente a parede vascular de células tumorais. Os fagos selecionados nesse trabalho podem, em um futuro próximo, ser utilizados como biomarcadores teciduais, podendo ajudar tanto no diagnóstico, quanto no tratamento do câncer de mama. O elevado grau de informação de cada peptídeo selecionado obtido pelas análises de bioinformática e os resultados obtidos nos testes ELISA, Dotblotting, Western-blotting e imunohistoquímica validam os dados de bioppaning subtrativo e comprovam a eficiência da técnica de Phage Display. CAPITULO III: No Brasil, o câncer de mama é a patologia maligna mais frequente na população feminina e tem o seu quadro agravado pelo fato do diagnóstico ser estabelecido, na maioria das vezes, em fase tardia da doença. Nesse trabalho foi utilizada a técnica de Phage Display para isolar peptídeos ligantes às proteínas do soro de mulheres com câncer de mama para obtenção de biomarcadores que possam ser utilizados no diagnóstico sorológico dessa patologia. Para seleção dos peptídeos foi realizado um bioppaning subtrativo utilizando uma biblioteca de peptídeos Ph.D.-12 expressa na superfície do fago filamentoso M13. A biblioteca de fagos foi colocada, primeiramente, em contato com soro de mulheres clinicamente sadias, depois em contato com soro de mulheres com doenças benignas de mama, e por último, em contato com soro de mulheres com câncer de mama, para que os fagos ligantes a proteínas do soro de mulheres sem a patologia ou com doença benigna fossem eliminados. O DNA dos fagos selecionados foi seqüenciado e as seqüências analisadas por bioinformática. As técnicas ELISA e dot-blotting foram utilizadas para confirmar o sucesso da seleção. Todos os clones analisados apresentaram Razão do Índice ELISA maior do que um e alto grau de informação. A seqüência IETYESTHQSPP foi a mais frequente e apresentou alta reatividade nas análises de dot-blotting com IgGs do soro de pacientes com câncer de mama. Os clones T03, T18 e T09 apresentaram similaridade com a Ubiquitina e os clones T06, T19, T04, T10, T11, T14, T17 com motivos Zinc Finger. O fato de diferentes clones apresentarem similaridade para um mesmo tipo de proteína sugere que diferentes motivos de uma mesma proteína podem ser epítopos reconhecidos por autoanticorpos ou que esses motivos estejam interagindo com proteínas associadas ao câncer de mama, visto que o bioppaning foi feito com soro total.Universidade Federal de UberlândiaBRPrograma de Pós-graduação em Genética e BioquímicaCiências BiológicasUFUGoulart Filho, Luiz Ricardohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781012P8Bonetti, Ana Mariahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783660P9Arap, Marco Antoniohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4790201Y0Ávila, Veridiana de Melo Rodrigueshttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4720590E9Kerr, Warwick Estevamhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783950T1Rocha, José Cláudio Casali dahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4739455A1Sousa, Cristina Soares de2016-06-22T18:43:19Z2014-02-272016-06-22T18:43:19Z2007-02-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfapplication/pdfSOUSA, Cristina Soares de. Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display. 2007. 111 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2007.https://repositorio.ufu.br/handle/123456789/15688porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFU2017-06-26T18:47:02Zoai:repositorio.ufu.br:123456789/15688Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2017-06-26T18:47:02Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
title Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
spellingShingle Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
Sousa, Cristina Soares de
Câncer de mama
Mama - Câncer
Phage Display
Breast cancer
CNPQ::CIENCIAS BIOLOGICAS::GENETICA
title_short Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
title_full Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
title_fullStr Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
title_full_unstemmed Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
title_sort Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display
author Sousa, Cristina Soares de
author_facet Sousa, Cristina Soares de
author_role author
dc.contributor.none.fl_str_mv Goulart Filho, Luiz Ricardo
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781012P8
Bonetti, Ana Maria
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783660P9
Arap, Marco Antonio
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4790201Y0
Ávila, Veridiana de Melo Rodrigues
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4720590E9
Kerr, Warwick Estevam
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783950T1
Rocha, José Cláudio Casali da
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4739455A1
dc.contributor.author.fl_str_mv Sousa, Cristina Soares de
dc.subject.por.fl_str_mv Câncer de mama
Mama - Câncer
Phage Display
Breast cancer
CNPQ::CIENCIAS BIOLOGICAS::GENETICA
topic Câncer de mama
Mama - Câncer
Phage Display
Breast cancer
CNPQ::CIENCIAS BIOLOGICAS::GENETICA
description CHAPTER II: Breast cancer is one of the main causes of death among women, as there is no primary prevention. Early detection is the main objective aiming decrease mortality and increase survival. We used phage display technology to isolate ligand peptides to breast cancer tissues in order to select potential biomarkers for the improvement of diagnosis and treatment. Two random peptide libraries with seven and twelve residues expressed in fusion with the pIII protein of the M13 bacteriophage, Ph.D.-7 and Ph.D.-12, respectively, were firstly submitted to a pre clearing by placing them in contact with proteins of normal breast tissues, in oder to eliminate peptides that may recognize healthy tissues. Remaining phages in the supernatant was further selected through three rounds of positive selection. DNA of selected phage were sequenced and translated. Peptide sequences were then submitted to bioinformatic analyzes, ELISA, Dot-blotting, western-blotting and immunohistochemistry assays to confirm the selection strategy and to provide further evidences of the putative biological targets. The immunohistochemistry analysis was performed with six selected phage (BC04, BC05, BC07, BC11, BC12, BC17) in breast cancer, and a mixture of three phage (BC11, BC12, BC17) has been tested in breast and ovary cancers, non-Hodgkin lymphoma, and melanoma. All phages presented high information content with significant ELISA indexes. The Dot-blotting and western-blotting assays have validated the selection by demonstrating high specificity to tumor proteins. The immunohistochemistry analyzes have shown specific binding only to tumor cells. The mixture of phages has recognized all types of tumor tissues, except melanoma. Three selected phage, BC04, BC05 and BC07 have specifically marked the vascular walls of tumor cells. The selected phage may be used in the future as tissue biomarkers for diagnosis and therapeutic procedures in breast cancer. The high information content and the significant data presented by all immunological assays have validated the Phage Display subtractive selection strategy. CHAPTER III: Breast cancer is the most frequent malignant pathology in the Brazilian women population, which is aggravated by diagnosis in later stages of the disease. The aim of this investigation was to select and identify ligand peptides to serum proteins of women with breast cancer through phage display in order to use them as serological biomarkers. Selection of phages was performed in three steps using a random peptide library of 12 residues (Ph.D.-12). The first two selection steps consisted of a pre clearing using the phage libraries against sera proteins of healthy individuals, followed by a second selection against sera proteins of patients with benign breast diseases. After subtraction, the library was submitted to a positive selection against sera of patients with breast cancer. Phage ligands were selected, amplified, and the DNA was sequenced and translated. Peptide sequences were subimtted bioinformatic analyses and to ELISA and dot-blotting assays to confirm selection success. All clones presented significant ELISA indexes and a high information content. The sequence IETYESTHQSPP was the most frequent and presented a high reactivity against IgG from breast cancer patients´ in the dot-blotting analysis. Clones T03, T18 and T09 presented similarity with the ubiquitin and clones T06, T19, T04, T10, T11, T14, T17 with zinc finger motifs. The fact of different clones to present similarity for the same type of protein suggests that different motifs of one same protein can be epitopes recognized by auto-antibodies or that these motifs are interacting with proteins associated to breast cancer, since biopanning was made with total serum.
publishDate 2007
dc.date.none.fl_str_mv 2007-02-16
2014-02-27
2016-06-22T18:43:19Z
2016-06-22T18:43:19Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SOUSA, Cristina Soares de. Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display. 2007. 111 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2007.
https://repositorio.ufu.br/handle/123456789/15688
identifier_str_mv SOUSA, Cristina Soares de. Identificação e caracterização de biomarcadores teciduais e sorológicos no câncer de mama por Phage Display. 2007. 111 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2007.
url https://repositorio.ufu.br/handle/123456789/15688
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
BR
Programa de Pós-graduação em Genética e Bioquímica
Ciências Biológicas
UFU
publisher.none.fl_str_mv Universidade Federal de Uberlândia
BR
Programa de Pós-graduação em Genética e Bioquímica
Ciências Biológicas
UFU
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
instacron_str UFU
institution UFU
reponame_str Repositório Institucional da UFU
collection Repositório Institucional da UFU
repository.name.fl_str_mv Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv diinf@dirbi.ufu.br
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