Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais

Detalhes bibliográficos
Autor(a) principal: Limongi, Jean Ezequiel
Data de Publicação: 2013
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/16583
https://doi.org/10.14393/ufu.te.2013.50
Resumo: The hantaviruses are among the most important zoonotic pathogens of humans, especially due to high fatality, those associated with Hantavirus Pulmonary Syndrome (HPS). In Brazil, more than 1600 cases of HPS have been confirmed since 1993, with a fatality rate of 40%. The viral genotypes associated with HPS in humans, as well as those present in wild rodents were investigated in an endemic area of the state of Minas Gerais in this study. Furthermore, the seroprevalence for hantaviruses, the karyotyping of rodent species captured and the population dynamics of these animals on the Cerrado vegetation types were also evaluated in an ecoepidemiological approach. The ELISA and / or RT-PCR were used to test sera from human cases of SPH and wild rodents and rodent lung fragments. In our study, six patients were evaluated, of these six (100%) were seroreactive in ELISA in six (100%) was possible to amplify viral genetic material and in five (83.3%) was possible sequencing. Were observed in all the viral genotype Araraquara (ARAV), but with the formation of two well-defined clusters. The case fatality rate was 50%. Regarding rodents, 258 specimens were captured. Nine taxa were identified to species level and seven in genus level, all belonging to the subfamily Sigmodontinae. Necromys lasiurus was the most abundant (70.2). We observed a greater diversity of rodents in a fitofisionomy called semi-deciduous dry forest (07 taxa in species level and four in genus level). The winter dry season was associated with the highest capture success (p <0.0001). There was a higher prevalence of pregnancy during the rainy season (p <0.0001). There was a prevalence of IgG antibodies against hantavirus of 1.6%, all specimens of N. lasiurus. Among the four seroreactive rodents, three (75%) was possible to amplify viral genetic material and two (50%) was possible sequencing. Only ARAV viral genotype was observed. Samples of rodents had higher phylogenetic identity with the genotype sequenced of the human sample of Uberlândia, Minas Gerais, where the rodents were also captured. Samples identified with ARAV analyzed in this study were distributed at a distance of approximately 400 kilometers. Despite the geographical distance, we observed a high phylogenetic identity between two samples 384 km distant from each other. The environmental and demographic changes that have occurred in recent decades in the study area affected the ecology of wild rodents and facilitated the occurrence of hantavirus infections in humans and the emergence of HPS in this region, mainly ARAV transmitted by N. lasiurus. The observation in this study only the genotype ARAV in specimens of N. lasiurus and humans, does not exclude the possibility of co-circulation of other viral genotypes in this area, beyond the possibility of the existence of other reservoirs of hantaviruses, including non-rodents.
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spelling Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas GeraisHantavírusVírus AraraquaraNecromys lasiurusSíndrome Pulmonar por HantavírusAraraquara virusHantavirus Pulmonary SyndromeCNPQ::CIENCIAS BIOLOGICAS::IMUNOLOGIA::IMUNOLOGIA APLICADAThe hantaviruses are among the most important zoonotic pathogens of humans, especially due to high fatality, those associated with Hantavirus Pulmonary Syndrome (HPS). In Brazil, more than 1600 cases of HPS have been confirmed since 1993, with a fatality rate of 40%. The viral genotypes associated with HPS in humans, as well as those present in wild rodents were investigated in an endemic area of the state of Minas Gerais in this study. Furthermore, the seroprevalence for hantaviruses, the karyotyping of rodent species captured and the population dynamics of these animals on the Cerrado vegetation types were also evaluated in an ecoepidemiological approach. The ELISA and / or RT-PCR were used to test sera from human cases of SPH and wild rodents and rodent lung fragments. In our study, six patients were evaluated, of these six (100%) were seroreactive in ELISA in six (100%) was possible to amplify viral genetic material and in five (83.3%) was possible sequencing. Were observed in all the viral genotype Araraquara (ARAV), but with the formation of two well-defined clusters. The case fatality rate was 50%. Regarding rodents, 258 specimens were captured. Nine taxa were identified to species level and seven in genus level, all belonging to the subfamily Sigmodontinae. Necromys lasiurus was the most abundant (70.2). We observed a greater diversity of rodents in a fitofisionomy called semi-deciduous dry forest (07 taxa in species level and four in genus level). The winter dry season was associated with the highest capture success (p <0.0001). There was a higher prevalence of pregnancy during the rainy season (p <0.0001). There was a prevalence of IgG antibodies against hantavirus of 1.6%, all specimens of N. lasiurus. Among the four seroreactive rodents, three (75%) was possible to amplify viral genetic material and two (50%) was possible sequencing. Only ARAV viral genotype was observed. Samples of rodents had higher phylogenetic identity with the genotype sequenced of the human sample of Uberlândia, Minas Gerais, where the rodents were also captured. Samples identified with ARAV analyzed in this study were distributed at a distance of approximately 400 kilometers. Despite the geographical distance, we observed a high phylogenetic identity between two samples 384 km distant from each other. The environmental and demographic changes that have occurred in recent decades in the study area affected the ecology of wild rodents and facilitated the occurrence of hantavirus infections in humans and the emergence of HPS in this region, mainly ARAV transmitted by N. lasiurus. The observation in this study only the genotype ARAV in specimens of N. lasiurus and humans, does not exclude the possibility of co-circulation of other viral genotypes in this area, beyond the possibility of the existence of other reservoirs of hantaviruses, including non-rodents.Doutor em Imunologia e Parasitologia AplicadasOs hantavírus estão entre os patógenos zoonóticos mais importantes para o homem, especialmente devido a alta letalidade, daqueles associados à Síndrome Pulmonar por hantavírus (SPH). No Brasil, mais de 1600 casos de SPH foram confirmados desde 1993, com uma taxa de letalidade de 40%. Os genótipos virais associados à SPH em humanos, bem como os presentes nos roedores silvestres foram investigados em uma área endêmica do estado de Minas Gerais neste estudo. Além disso, a soroprevalência para hantavírus, a cariotipagem das espécies de roedores capturadas e a dinâmica populacional destes animais nas fitofisionomias do Cerrado também foram avaliadas em uma abordagem ecoepidemiológica. O ELISA e/ou o RT-PCR foram utilizados para testar amostras de soro de casos humanos suspeitos de SPH e de roedores silvestres e fragmentos de pulmão de roedores. Em nossa casuística, seis pacientes foram avaliados, destes (100%) foram sororreativos no ELISA, e em seis (100%) foi possível amplificar material genético viral e em cinco (83,3%) foi possível o sequenciamento. Em todos foram observados o genótipo viral Araraquara (ARAV), porém com a formação de dois clusters bem definidos. A taxa de letalidade dos casos foi de 50%. Em relação aos roedores, 258 espécimes foram capturados. Nove táxons foram identificados a nível específico e sete a nível genérico, todos pertencentes à subfamília Sigmodontinae. Necromys lasiurus foi a espécie mais capturada (70,2). Foi observada maior diversidade de roedores na fitofisionomia Mata seca semidecídua (07 táxons a nível específico e quatro a nível genérico), A estação inverno seco esteve relacionada com o maior sucesso de captura (p < 0,0001). Houve maior prevalência de prenhez durante a estação chuvosa (p<0,0001). Observou-se uma prevalência de anticorpos IgG contra hantavírus de 1,6%, todos espécimes de N. lasiurus. Dentre os quatro roedores sororreativos, em três (75%) foi possível amplificar material genético viral e em dois (50%) foi possível o sequenciamento. Somente o genótipo viral ARAV foi observado. Estes tiveram maior identidade filogenética com o genótipo viral sequenciado de uma amostra humana do município de Uberlândia-MG, local onde também os roedores foram capturados. As amostras identificadas com ARAV analisados no presente estudo foram distribuídas a uma distância de aproximadamente 400 quilômetros. Apesar da distância geográfica, observamos uma alta identidade filogenética entre duas amostras distantes 384 km entre si. As alterações ambientais e demográficas ocorridas nas últimas décadas na área de estudo afetou a ecologia dos roedores silvestres e facilitou a ocorrência de infecções humanas por hantavírus e a emergência da SPH nesta região, principalmente por ARAV transmitido por N. lasiurus. A observação neste estudo apenas do genótipo ARAV em espécimes de N. lasiurus e humanos, não exclui a possibilidade de cocirculação de outros genótipos virais nesta área, além da possibilidade da existência de outros reservatórios de hantavírus, inclusive não roedores.Universidade Federal de UberlândiaBRPrograma de Pós-graduação em Imunologia e Parasitologia AplicadasCiências BiológicasUFULemos, Elba Regina Sampaio dehttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4791032E3Szabó, Matias Pablo Juanhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4786211E0Ferreira, Marcelo SimãoMedeiros, Alessandra Aparecidahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4799971J9Moreli, Marcos Lázarohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4706010A7Santos, Renata C. de O. Pires dosLimongi, Jean Ezequiel2016-06-22T18:46:21Z2013-05-142016-06-22T18:46:21Z2013-05-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfapplication/pdfLIMONGI, Jean Ezequiel. Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais. 2013. 88 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2013. DOI https://doi.org/10.14393/ufu.te.2013.50https://repositorio.ufu.br/handle/123456789/16583https://doi.org/10.14393/ufu.te.2013.50porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFU2022-08-08T19:59:32Zoai:repositorio.ufu.br:123456789/16583Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2022-08-08T19:59:32Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
title Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
spellingShingle Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
Limongi, Jean Ezequiel
Hantavírus
Vírus Araraquara
Necromys lasiurus
Síndrome Pulmonar por Hantavírus
Araraquara virus
Hantavirus Pulmonary Syndrome
CNPQ::CIENCIAS BIOLOGICAS::IMUNOLOGIA::IMUNOLOGIA APLICADA
title_short Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
title_full Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
title_fullStr Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
title_full_unstemmed Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
title_sort Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais
author Limongi, Jean Ezequiel
author_facet Limongi, Jean Ezequiel
author_role author
dc.contributor.none.fl_str_mv Lemos, Elba Regina Sampaio de
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4791032E3
Szabó, Matias Pablo Juan
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4786211E0
Ferreira, Marcelo Simão
Medeiros, Alessandra Aparecida
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4799971J9
Moreli, Marcos Lázaro
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4706010A7
Santos, Renata C. de O. Pires dos
dc.contributor.author.fl_str_mv Limongi, Jean Ezequiel
dc.subject.por.fl_str_mv Hantavírus
Vírus Araraquara
Necromys lasiurus
Síndrome Pulmonar por Hantavírus
Araraquara virus
Hantavirus Pulmonary Syndrome
CNPQ::CIENCIAS BIOLOGICAS::IMUNOLOGIA::IMUNOLOGIA APLICADA
topic Hantavírus
Vírus Araraquara
Necromys lasiurus
Síndrome Pulmonar por Hantavírus
Araraquara virus
Hantavirus Pulmonary Syndrome
CNPQ::CIENCIAS BIOLOGICAS::IMUNOLOGIA::IMUNOLOGIA APLICADA
description The hantaviruses are among the most important zoonotic pathogens of humans, especially due to high fatality, those associated with Hantavirus Pulmonary Syndrome (HPS). In Brazil, more than 1600 cases of HPS have been confirmed since 1993, with a fatality rate of 40%. The viral genotypes associated with HPS in humans, as well as those present in wild rodents were investigated in an endemic area of the state of Minas Gerais in this study. Furthermore, the seroprevalence for hantaviruses, the karyotyping of rodent species captured and the population dynamics of these animals on the Cerrado vegetation types were also evaluated in an ecoepidemiological approach. The ELISA and / or RT-PCR were used to test sera from human cases of SPH and wild rodents and rodent lung fragments. In our study, six patients were evaluated, of these six (100%) were seroreactive in ELISA in six (100%) was possible to amplify viral genetic material and in five (83.3%) was possible sequencing. Were observed in all the viral genotype Araraquara (ARAV), but with the formation of two well-defined clusters. The case fatality rate was 50%. Regarding rodents, 258 specimens were captured. Nine taxa were identified to species level and seven in genus level, all belonging to the subfamily Sigmodontinae. Necromys lasiurus was the most abundant (70.2). We observed a greater diversity of rodents in a fitofisionomy called semi-deciduous dry forest (07 taxa in species level and four in genus level). The winter dry season was associated with the highest capture success (p <0.0001). There was a higher prevalence of pregnancy during the rainy season (p <0.0001). There was a prevalence of IgG antibodies against hantavirus of 1.6%, all specimens of N. lasiurus. Among the four seroreactive rodents, three (75%) was possible to amplify viral genetic material and two (50%) was possible sequencing. Only ARAV viral genotype was observed. Samples of rodents had higher phylogenetic identity with the genotype sequenced of the human sample of Uberlândia, Minas Gerais, where the rodents were also captured. Samples identified with ARAV analyzed in this study were distributed at a distance of approximately 400 kilometers. Despite the geographical distance, we observed a high phylogenetic identity between two samples 384 km distant from each other. The environmental and demographic changes that have occurred in recent decades in the study area affected the ecology of wild rodents and facilitated the occurrence of hantavirus infections in humans and the emergence of HPS in this region, mainly ARAV transmitted by N. lasiurus. The observation in this study only the genotype ARAV in specimens of N. lasiurus and humans, does not exclude the possibility of co-circulation of other viral genotypes in this area, beyond the possibility of the existence of other reservoirs of hantaviruses, including non-rodents.
publishDate 2013
dc.date.none.fl_str_mv 2013-05-14
2013-05-06
2016-06-22T18:46:21Z
2016-06-22T18:46:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv LIMONGI, Jean Ezequiel. Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais. 2013. 88 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2013. DOI https://doi.org/10.14393/ufu.te.2013.50
https://repositorio.ufu.br/handle/123456789/16583
https://doi.org/10.14393/ufu.te.2013.50
identifier_str_mv LIMONGI, Jean Ezequiel. Caracterização genética dos hantavírus em roedores sigmodontíneos e humanos em área endêmica de síndrome cardiopulmonar por hantavírus no estado de Minas Gerais. 2013. 88 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2013. DOI https://doi.org/10.14393/ufu.te.2013.50
url https://repositorio.ufu.br/handle/123456789/16583
https://doi.org/10.14393/ufu.te.2013.50
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language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
BR
Programa de Pós-graduação em Imunologia e Parasitologia Aplicadas
Ciências Biológicas
UFU
publisher.none.fl_str_mv Universidade Federal de Uberlândia
BR
Programa de Pós-graduação em Imunologia e Parasitologia Aplicadas
Ciências Biológicas
UFU
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
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institution UFU
reponame_str Repositório Institucional da UFU
collection Repositório Institucional da UFU
repository.name.fl_str_mv Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv diinf@dirbi.ufu.br
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