Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia

Detalhes bibliográficos
Autor(a) principal: Scalia, Luana Araújo Macedo
Data de Publicação: 2012
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/16679
https://doi.org/10.14393/ufu.di.2012.254
Resumo: Giardia duodenalis is a parasite of several mammalian species, including humans, with a worldwide distribution. It is associated with diarrhea and nutritional disorders, especially in children. Molecular characterization of the parasite is crucial to identify assemblages/sub-assemblages related to infection, and its association with clinical manifestations. The goal was to identify the molecular assemblages/sub-assemblages of G. duodenalis in children from pre-school, from Araguari and Uberlândia, Minas Gerais, Brazil. It was used four genes for this research. The cysts were researched with 33% zinc sulfate flotation. The molecular characterization used SSU rRNA, β-giardin (bg), glutamate dehydrogenase (gdh) and triose phosphate isomerase (tpi) protocols. We conducted a multilocus genotyping (MLG) and the association between clinical manifestations and assemblage. Cysts of G.duodenalis were found in 45 (19.9%) of 226 stool samples from nurseries children. PCR detection (SSU rRNA protocol) failed to amplify DNA samples. Tpi protocol has amplified thirty-four sequences: 16 assemblage A, 14 assemblage B and four mixed samples A/B. Gdh protocol amplified 32 sequences, including 14 assemblage A, 16 assemblage B and two A/B. For bg protocol 19 samples sequenced, nine was characterized as assemblage A, five as assemblage B, three as E, and two mixed, A/E and B/E. The predominance of assemblages varied with the gene protocol used. Heterogeneous samples were found in all genes, including mixed inter-assemblages A/B, A/E, B/E, and intra-assemblage BIII/BIV. Animal-specific (assemblage E) samples were identified with bg, and not confirmed by other genes. From 45 positive samples by optical microscopy, 35 were amplified by nested PCR for at least one gene. Among all, 12 samples were characterized in full concordance by the three genes. It was described two new MLGs assemblages A and five new MLGs to assemblage B. Assemblage A was highly prevalent in Araguari (p = 0.0101) and assemblage B, in Uberlândia. There was a statistically association (p = 0.0454) between assemblage B and diarrhea. There was no association with other clinical manifestations such as abdominal pain, vomiting, weight loss, flatulence and stool consistency. These findings prove the importance of using more than one gene protocol, since the sensitivity and genetic variability changes with the locus used. Heterogeneous sequences were found for all three genes and were considered mixed infections. PCR failed to amplify positive samples by optical microscopy. The use of MLG was important for the classification of assemblage A isolates, but less effective in assemblage B.
id UFU_b3936c69cadbb0734da58931eb2e4215
oai_identifier_str oai:repositorio.ufu.br:123456789/16679
network_acronym_str UFU
network_name_str Repositório Institucional da UFU
repository_id_str
spelling 2016-06-22T18:46:38Z2012-10-112016-06-22T18:46:38Z2012-05-24SCALIA, Luana Araújo Macedo. Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia. 2012. 95 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2012. DOI https://doi.org/10.14393/ufu.di.2012.254https://repositorio.ufu.br/handle/123456789/16679https://doi.org/10.14393/ufu.di.2012.254Giardia duodenalis is a parasite of several mammalian species, including humans, with a worldwide distribution. It is associated with diarrhea and nutritional disorders, especially in children. Molecular characterization of the parasite is crucial to identify assemblages/sub-assemblages related to infection, and its association with clinical manifestations. The goal was to identify the molecular assemblages/sub-assemblages of G. duodenalis in children from pre-school, from Araguari and Uberlândia, Minas Gerais, Brazil. It was used four genes for this research. The cysts were researched with 33% zinc sulfate flotation. The molecular characterization used SSU rRNA, β-giardin (bg), glutamate dehydrogenase (gdh) and triose phosphate isomerase (tpi) protocols. We conducted a multilocus genotyping (MLG) and the association between clinical manifestations and assemblage. Cysts of G.duodenalis were found in 45 (19.9%) of 226 stool samples from nurseries children. PCR detection (SSU rRNA protocol) failed to amplify DNA samples. Tpi protocol has amplified thirty-four sequences: 16 assemblage A, 14 assemblage B and four mixed samples A/B. Gdh protocol amplified 32 sequences, including 14 assemblage A, 16 assemblage B and two A/B. For bg protocol 19 samples sequenced, nine was characterized as assemblage A, five as assemblage B, three as E, and two mixed, A/E and B/E. The predominance of assemblages varied with the gene protocol used. Heterogeneous samples were found in all genes, including mixed inter-assemblages A/B, A/E, B/E, and intra-assemblage BIII/BIV. Animal-specific (assemblage E) samples were identified with bg, and not confirmed by other genes. From 45 positive samples by optical microscopy, 35 were amplified by nested PCR for at least one gene. Among all, 12 samples were characterized in full concordance by the three genes. It was described two new MLGs assemblages A and five new MLGs to assemblage B. Assemblage A was highly prevalent in Araguari (p = 0.0101) and assemblage B, in Uberlândia. There was a statistically association (p = 0.0454) between assemblage B and diarrhea. There was no association with other clinical manifestations such as abdominal pain, vomiting, weight loss, flatulence and stool consistency. These findings prove the importance of using more than one gene protocol, since the sensitivity and genetic variability changes with the locus used. Heterogeneous sequences were found for all three genes and were considered mixed infections. PCR failed to amplify positive samples by optical microscopy. The use of MLG was important for the classification of assemblage A isolates, but less effective in assemblage B.Giardia duodenalis é parasito de várias espécies de mamíferos, incluindo humanos, tendo distribuição mundial. Está associado à diarréia e desordens nutricionais, especialmente em crianças. A caracterização molecular do parasito é fundamental para identificar as Assemblages/sub-Assemblages relacionadas à infecção, possibilitando a associação dessas com manifestações clínicas. O objetivo deste estudo foi caracterizar molecularmente as Assemblages/sub-Assemblages de G. duodenalis em crianças de pré-escola, provenientes das cidades de Araguari e Uberlândia, Minas Gerais, Brasil, utilizando quatro genes. Para a pesquisa de cistos foi utilizado a técnica de flutuação em sulfato de zinco a 33%. A caracterização molecular utilizou os genes SSU rRNA, β-giardin (bg), glutamato dehidrogenase (gdh) e triose-fostato isomerase (tpi). Foram realizadas análises de genotipagem multilocus (MLG), e de associação entre manifestações clínicas e Assemblages. A presença de cistos de G.duodenalis foi observada em 45 (19,9%) das 226 amostras fecais de crianças procedentes de creches. A PCR falhou em amplificar e sequenciar amostras para o gene SSU rRNA. Trinta e quatro sequências amplificaram pelo gene tpi, sendo 16 Assemblage A, 14 Assemblage B e quatro amostras mistas A/B. Das 32 sequências obtidas pelo gdh, 14 foram Assemblage A, 16 Assemblage B e duas A/B. Para o bg 19 amostras sequenciaram, sendo nove Assemblage A, cinco B, três Assemblage E e duas mistas, A/E e B/E. A predominância de Assemblages variou de acordo com o gene utilizado. Amostras heterogêneas foram encontradas nos três genes, entre elas amostras mistas inter-Assemblages A/B, A/E, B/E e, intra-Assemblage BIII/BIV. Amostras animal-específica (Assemblage E) foram identificadas pelo gene bg, e não confirmadas pelos outros genes. De 45 amostras positivas para microscopia, 35 foram amplificadas pela nested PCR por algum dos gene. Dessas, 12 amostras tiveram completa concordândia inter-Assemblage entre os três genes. Na classificação da MLG, observou-se duas novas MLGs para Assemblage A e cinco novas MLGs para Assemblage B. Houve associação significante (p=0,0101) para Assemblage e localidade, sendo Assemblage A mais prevalente em Araguari e B, em Uberlândia. Observou-se relação significante (p=0,0454) entre Assemblage B e diarréia. Não houve associação com outras manifestações clínicas, tais como dor abdominal, vômito, perda de peso, flatulência e consistência das fezes. Estes achados comprovam a importância do uso de mais de um gene, pois a sensibilidade e variabilidade genética muda, de acordo com o marcador utilizado. Sequências heterogêneas foram encontradas para os três genes e algumas foram consideradas infecções mistas. A PCR falhou em amplificar amostras positivas pela microscopia óptica. A utilização da MLG foi importante para classificação das amostras Assemblage A, mas pouco efetiva para Assemblage B.Fundação de Amparo a Pesquisa do Estado de Minas GeraisMestre em Imunologia e Parasitologia Aplicadasapplication/pdfporUniversidade Federal de UberlândiaPrograma de Pós-graduação em Imunologia e Parasitologia AplicadasUFUBRCiências BiológicasGiardia duodenalisCNPQ::CIENCIAS BIOLOGICAS::PARASITOLOGIAIdentificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândiainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisCury, Márcia Cristinahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728275U6Cunha Junior, Jair Pereira dahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4795802Y5Soares, Rodrigo Martinshttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4701730Z4http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4423975U0Scalia, Luana Araújo Macedo81761535info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFUTHUMBNAILd.pdf.jpgd.pdf.jpgGenerated Thumbnailimage/jpeg1264https://repositorio.ufu.br/bitstream/123456789/16679/3/d.pdf.jpgeb3dbab5b7394e3aa30caf4db4ba946dMD53ORIGINALd.pdfapplication/pdf1759470https://repositorio.ufu.br/bitstream/123456789/16679/1/d.pdf36d78780ec1d9875e992b5e4133c2a8fMD51TEXTd.pdf.txtd.pdf.txtExtracted texttext/plain146421https://repositorio.ufu.br/bitstream/123456789/16679/2/d.pdf.txt72142235eafe2db66b7e8dfbcf3d56dbMD52123456789/166792022-10-25 16:00:47.038oai:repositorio.ufu.br:123456789/16679Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2022-10-25T19:00:47Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.por.fl_str_mv Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
title Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
spellingShingle Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
Scalia, Luana Araújo Macedo
Giardia duodenalis
CNPQ::CIENCIAS BIOLOGICAS::PARASITOLOGIA
title_short Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
title_full Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
title_fullStr Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
title_full_unstemmed Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
title_sort Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia
author Scalia, Luana Araújo Macedo
author_facet Scalia, Luana Araújo Macedo
author_role author
dc.contributor.advisor1.fl_str_mv Cury, Márcia Cristina
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728275U6
dc.contributor.referee1.fl_str_mv Cunha Junior, Jair Pereira da
dc.contributor.referee1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4795802Y5
dc.contributor.referee2.fl_str_mv Soares, Rodrigo Martins
dc.contributor.referee2Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4701730Z4
dc.contributor.authorLattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4423975U0
dc.contributor.author.fl_str_mv Scalia, Luana Araújo Macedo
contributor_str_mv Cury, Márcia Cristina
Cunha Junior, Jair Pereira da
Soares, Rodrigo Martins
dc.subject.por.fl_str_mv Giardia duodenalis
topic Giardia duodenalis
CNPQ::CIENCIAS BIOLOGICAS::PARASITOLOGIA
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS::PARASITOLOGIA
description Giardia duodenalis is a parasite of several mammalian species, including humans, with a worldwide distribution. It is associated with diarrhea and nutritional disorders, especially in children. Molecular characterization of the parasite is crucial to identify assemblages/sub-assemblages related to infection, and its association with clinical manifestations. The goal was to identify the molecular assemblages/sub-assemblages of G. duodenalis in children from pre-school, from Araguari and Uberlândia, Minas Gerais, Brazil. It was used four genes for this research. The cysts were researched with 33% zinc sulfate flotation. The molecular characterization used SSU rRNA, β-giardin (bg), glutamate dehydrogenase (gdh) and triose phosphate isomerase (tpi) protocols. We conducted a multilocus genotyping (MLG) and the association between clinical manifestations and assemblage. Cysts of G.duodenalis were found in 45 (19.9%) of 226 stool samples from nurseries children. PCR detection (SSU rRNA protocol) failed to amplify DNA samples. Tpi protocol has amplified thirty-four sequences: 16 assemblage A, 14 assemblage B and four mixed samples A/B. Gdh protocol amplified 32 sequences, including 14 assemblage A, 16 assemblage B and two A/B. For bg protocol 19 samples sequenced, nine was characterized as assemblage A, five as assemblage B, three as E, and two mixed, A/E and B/E. The predominance of assemblages varied with the gene protocol used. Heterogeneous samples were found in all genes, including mixed inter-assemblages A/B, A/E, B/E, and intra-assemblage BIII/BIV. Animal-specific (assemblage E) samples were identified with bg, and not confirmed by other genes. From 45 positive samples by optical microscopy, 35 were amplified by nested PCR for at least one gene. Among all, 12 samples were characterized in full concordance by the three genes. It was described two new MLGs assemblages A and five new MLGs to assemblage B. Assemblage A was highly prevalent in Araguari (p = 0.0101) and assemblage B, in Uberlândia. There was a statistically association (p = 0.0454) between assemblage B and diarrhea. There was no association with other clinical manifestations such as abdominal pain, vomiting, weight loss, flatulence and stool consistency. These findings prove the importance of using more than one gene protocol, since the sensitivity and genetic variability changes with the locus used. Heterogeneous sequences were found for all three genes and were considered mixed infections. PCR failed to amplify positive samples by optical microscopy. The use of MLG was important for the classification of assemblage A isolates, but less effective in assemblage B.
publishDate 2012
dc.date.available.fl_str_mv 2012-10-11
2016-06-22T18:46:38Z
dc.date.issued.fl_str_mv 2012-05-24
dc.date.accessioned.fl_str_mv 2016-06-22T18:46:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SCALIA, Luana Araújo Macedo. Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia. 2012. 95 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2012. DOI https://doi.org/10.14393/ufu.di.2012.254
dc.identifier.uri.fl_str_mv https://repositorio.ufu.br/handle/123456789/16679
dc.identifier.doi.none.fl_str_mv https://doi.org/10.14393/ufu.di.2012.254
identifier_str_mv SCALIA, Luana Araújo Macedo. Identificação molecular dos isolados de Giardia duodenalis em crianças procedentes dos municípios de Araguari e Uberlândia. 2012. 95 f. Dissertação (Mestrado em Ciências Biológicas) - Universidade Federal de Uberlândia, Uberlândia, 2012. DOI https://doi.org/10.14393/ufu.di.2012.254
url https://repositorio.ufu.br/handle/123456789/16679
https://doi.org/10.14393/ufu.di.2012.254
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Imunologia e Parasitologia Aplicadas
dc.publisher.initials.fl_str_mv UFU
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Ciências Biológicas
publisher.none.fl_str_mv Universidade Federal de Uberlândia
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
instacron_str UFU
institution UFU
reponame_str Repositório Institucional da UFU
collection Repositório Institucional da UFU
bitstream.url.fl_str_mv https://repositorio.ufu.br/bitstream/123456789/16679/3/d.pdf.jpg
https://repositorio.ufu.br/bitstream/123456789/16679/1/d.pdf
https://repositorio.ufu.br/bitstream/123456789/16679/2/d.pdf.txt
bitstream.checksum.fl_str_mv eb3dbab5b7394e3aa30caf4db4ba946d
36d78780ec1d9875e992b5e4133c2a8f
72142235eafe2db66b7e8dfbcf3d56db
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv diinf@dirbi.ufu.br
_version_ 1802110397001498624