Análise evolutiva das fitocistatinas na linhagem vegetal

Detalhes bibliográficos
Autor(a) principal: Silva, Gustavo Caetano
Data de Publicação: 2019
Tipo de documento: Trabalho de conclusão de curso
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/27682
Resumo: Cystatins are C1 and C13 cysteine protease inhibitor proteins that act by their reversible binding in the active site of the proteases. Phytocystatins have potential for pest control, environmental resistance to cultivars and in nutraceutica. Given the importance of phytocystatins, the objective of this work was to carry out an in silico evolutionary analysis of these proteins in the plant lineage, searching for cystatins in algae, green algae, bryophytes and pteridophytes. Protein databases encoded by the genomes of 416 species of algae, green algae, bryophytes and pteridophytes obtained from 1000 Plants database, were created for the analyzes. The blastp tool was used along with Blast2GO program to identify the cystatin sequences present in the databases. The conserved domains were also identified. And with MEGAX program, the alignment of the sequences was made using the MUSCLE tool and the construction of phylogenetic trees were performed. Was predicted 36 phytocystatins in green algae, 144 in bryophytes and 68 in pteridophytes, with the amino acids GG, LAxFAV-HN, QVVxG, YEAKVWxPWE and F conversed between them. Phylogenetic trees, indicated a small correlation between phytocystatins found with those observed in higher plants, so it was not possible to classify them using the known phytocystatins classification. This indicates the need for a new classification for this group of inhibitors, including these genes identified in primitive plants.
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spelling Análise evolutiva das fitocistatinas na linhagem vegetalEvolutive analysis of phytocystatins in the plant lineageCistatinasEvolução das fitocistatinasAlgas verdes, briófitas e pteridófitasCystatinsPhytocystatins evolutionGreen algae, bryophytes and pteridophytesCNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA VEGETALCystatins are C1 and C13 cysteine protease inhibitor proteins that act by their reversible binding in the active site of the proteases. Phytocystatins have potential for pest control, environmental resistance to cultivars and in nutraceutica. Given the importance of phytocystatins, the objective of this work was to carry out an in silico evolutionary analysis of these proteins in the plant lineage, searching for cystatins in algae, green algae, bryophytes and pteridophytes. Protein databases encoded by the genomes of 416 species of algae, green algae, bryophytes and pteridophytes obtained from 1000 Plants database, were created for the analyzes. The blastp tool was used along with Blast2GO program to identify the cystatin sequences present in the databases. The conserved domains were also identified. And with MEGAX program, the alignment of the sequences was made using the MUSCLE tool and the construction of phylogenetic trees were performed. Was predicted 36 phytocystatins in green algae, 144 in bryophytes and 68 in pteridophytes, with the amino acids GG, LAxFAV-HN, QVVxG, YEAKVWxPWE and F conversed between them. Phylogenetic trees, indicated a small correlation between phytocystatins found with those observed in higher plants, so it was not possible to classify them using the known phytocystatins classification. This indicates the need for a new classification for this group of inhibitors, including these genes identified in primitive plants.Trabalho de Conclusão de Curso (Graduação)Cistatinas são proteínas inibidoras de proteases cisteínicas C1 e C13, que atuam por meio da sua ligação reversível no sítio ativo das proteases. As fitocistatinas (PhyCys) apresentam potencial para o controle de pragas, resistência ambiental para cultivares e na nutracêutica. Tendo em vista a importância das PhyCys, o trabalho teve como objetivo realizar a análise evolutiva in silico destas proteínas na linhagem vegetal, buscando por cistatinas em algas, algas verdes, briófitas e pteridófitas. Para as análises foram criados bancos de dados de proteínas codificadas pelos genomas de 416 espécies de algas, algas verdes, briófitas e pteridófitas obtidas no banco de dados 1000 Plants. Foi utilizado a ferramenta blastp junto ao programa Blast2GO para identificar as sequências de cistatinas presentes nos bancos de dados, foi realizada também a identificação dos domínios conservados. E com auxílio do programa MEGAX foi realizado o alinhamento das sequências encontradas com a ferramenta MUSCLE e a construção das árvores filogenéticas. Foram preditas 36 PhyCys em algas verdes, 144 em briófitas e 68 em pteridófitas, com os aminoácidos GG, LAxFAV-HN, QVVxG, YEAKVWxPWE e F conversados entre elas. Já as árvores filogenéticas indicaram pouca correlação entre as PhyCys encontradas com as observadas em plantas superiores, desta forma não foi possível classificá-las usando a classificação conhecida de PhyCys. Isto indica a necessidade de uma nova classificação para esse grupo de inibidores, incluindo estes genes identificados em plantas mais primitivas.Universidade Federal de UberlândiaBrasilBiotecnologiaBarbosa, Aulus Estevão Anjos de Deushttp://lattes.cnpq.br/5331406701784638Cardoso, Thaís Cunha de SousaFreitas, Guilherme Ramos Oliveira eSilva, Gustavo Caetano2019-12-14T13:55:22Z2019-12-14T13:55:22Z2019-12-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bachelorThesisapplication/pdfSILVA, Gustavo Caetano. Análise evolutiva das fitocistatinas na linhagem vegetal. 2019. 62 f. Trabalho de Conclusão de Curso (Graduação em Biotecnologia) – Universidade Federal de Uberlândia, Patos de Minas, 2019.https://repositorio.ufu.br/handle/123456789/27682porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFU2019-12-15T06:12:41Zoai:repositorio.ufu.br:123456789/27682Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2019-12-15T06:12:41Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Análise evolutiva das fitocistatinas na linhagem vegetal
Evolutive analysis of phytocystatins in the plant lineage
title Análise evolutiva das fitocistatinas na linhagem vegetal
spellingShingle Análise evolutiva das fitocistatinas na linhagem vegetal
Silva, Gustavo Caetano
Cistatinas
Evolução das fitocistatinas
Algas verdes, briófitas e pteridófitas
Cystatins
Phytocystatins evolution
Green algae, bryophytes and pteridophytes
CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA VEGETAL
title_short Análise evolutiva das fitocistatinas na linhagem vegetal
title_full Análise evolutiva das fitocistatinas na linhagem vegetal
title_fullStr Análise evolutiva das fitocistatinas na linhagem vegetal
title_full_unstemmed Análise evolutiva das fitocistatinas na linhagem vegetal
title_sort Análise evolutiva das fitocistatinas na linhagem vegetal
author Silva, Gustavo Caetano
author_facet Silva, Gustavo Caetano
author_role author
dc.contributor.none.fl_str_mv Barbosa, Aulus Estevão Anjos de Deus
http://lattes.cnpq.br/5331406701784638
Cardoso, Thaís Cunha de Sousa
Freitas, Guilherme Ramos Oliveira e
dc.contributor.author.fl_str_mv Silva, Gustavo Caetano
dc.subject.por.fl_str_mv Cistatinas
Evolução das fitocistatinas
Algas verdes, briófitas e pteridófitas
Cystatins
Phytocystatins evolution
Green algae, bryophytes and pteridophytes
CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA VEGETAL
topic Cistatinas
Evolução das fitocistatinas
Algas verdes, briófitas e pteridófitas
Cystatins
Phytocystatins evolution
Green algae, bryophytes and pteridophytes
CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA VEGETAL
description Cystatins are C1 and C13 cysteine protease inhibitor proteins that act by their reversible binding in the active site of the proteases. Phytocystatins have potential for pest control, environmental resistance to cultivars and in nutraceutica. Given the importance of phytocystatins, the objective of this work was to carry out an in silico evolutionary analysis of these proteins in the plant lineage, searching for cystatins in algae, green algae, bryophytes and pteridophytes. Protein databases encoded by the genomes of 416 species of algae, green algae, bryophytes and pteridophytes obtained from 1000 Plants database, were created for the analyzes. The blastp tool was used along with Blast2GO program to identify the cystatin sequences present in the databases. The conserved domains were also identified. And with MEGAX program, the alignment of the sequences was made using the MUSCLE tool and the construction of phylogenetic trees were performed. Was predicted 36 phytocystatins in green algae, 144 in bryophytes and 68 in pteridophytes, with the amino acids GG, LAxFAV-HN, QVVxG, YEAKVWxPWE and F conversed between them. Phylogenetic trees, indicated a small correlation between phytocystatins found with those observed in higher plants, so it was not possible to classify them using the known phytocystatins classification. This indicates the need for a new classification for this group of inhibitors, including these genes identified in primitive plants.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-14T13:55:22Z
2019-12-14T13:55:22Z
2019-12-06
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/bachelorThesis
format bachelorThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SILVA, Gustavo Caetano. Análise evolutiva das fitocistatinas na linhagem vegetal. 2019. 62 f. Trabalho de Conclusão de Curso (Graduação em Biotecnologia) – Universidade Federal de Uberlândia, Patos de Minas, 2019.
https://repositorio.ufu.br/handle/123456789/27682
identifier_str_mv SILVA, Gustavo Caetano. Análise evolutiva das fitocistatinas na linhagem vegetal. 2019. 62 f. Trabalho de Conclusão de Curso (Graduação em Biotecnologia) – Universidade Federal de Uberlândia, Patos de Minas, 2019.
url https://repositorio.ufu.br/handle/123456789/27682
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Biotecnologia
publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Biotecnologia
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
instacron_str UFU
institution UFU
reponame_str Repositório Institucional da UFU
collection Repositório Institucional da UFU
repository.name.fl_str_mv Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv diinf@dirbi.ufu.br
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